Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_C12
         (852 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces ...   107   2e-24
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ...    31   0.27 
SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|ch...    28   1.5  
SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|ch...    28   1.5  
SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr...    27   3.4  
SPAC222.15 |meu13|SPAC821.01|Tat binding protein 1|Schizosacchar...    26   5.9  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    26   7.8  

>SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score =  107 bits (257), Expect = 2e-24
 Identities = 59/162 (36%), Positives = 95/162 (58%), Gaps = 1/162 (0%)
 Frame = +2

Query: 143 YHQPNRNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQFY 322
           +H  +   ATLK I  RLKS+KNI+KIT+++K V+  K TRA+R ++A+  Y   + + +
Sbjct: 24  FHASSPCEATLKEIEQRLKSIKNIEKITKTIKTVAQTKLTRAQRAMEASNKYYRVSDEVF 83

Query: 323 ERAEVTPPEDDPKQLFVAMTSDRGLCGAVHTGVSKVIRNRLSEPGA-ENIKVICVGDKSR 499
           + A    PE+  K L VA +SD+GLCG +H+ +S++IR  L +P   EN  +  +G+K R
Sbjct: 84  KEAGTKAPEEG-KTLMVACSSDKGLCGGIHSSISRLIRRELHDPKTFENTSLCILGEKVR 142

Query: 500 GILQRLYGKHIISVANEIGRLPPTFLDASQLATAILTSGYEF 625
             L R   +        IG   P+F +A Q+++ IL    ++
Sbjct: 143 TQLLRFCPESFYLTFAHIGGASPSFEEALQISSNILEHAKDY 184



 Score = 38.7 bits (86), Expect = 0.001
 Identities = 21/64 (32%), Positives = 34/64 (53%)
 Frame = +3

Query: 582 QVSWPLLSSPRDTSLVPGKIIYNKFKSVVSYAQSDLPLYTKKSIESASKLTAYDSLDSDX 761
           Q+S  +L   +D   +   ++YNKF S VS+      LYT K+I  +  L+AY+  D   
Sbjct: 172 QISSNILEHAKDYDRIV--LVYNKFASAVSFETVMKNLYTTKAINESPNLSAYEVSDEVH 229

Query: 762 APIL 773
            P++
Sbjct: 230 QPLM 233


>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 580

 Score = 30.7 bits (66), Expect = 0.27
 Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
 Frame = +2

Query: 341 PPEDD-PKQLFVAMTSDR----GLCGAVHTGVSKVIRNRLSEPGAENIKVICVGDKSRGI 505
           PPED  P++L   +T+      G+ GA+ TGV    +N L E GA ++ +IC       +
Sbjct: 70  PPEDGKPQKLKRTLTARHIQMIGIGGAIGTGVWVGSKNTLREGGAASV-LICYSLVGSMV 128

Query: 506 LQRLYGKHIISVA 544
           L  +Y    ++VA
Sbjct: 129 LMTVYSLGELAVA 141


>SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 383

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = -3

Query: 460 STRFAETVADHFGYTSVYSSAQTSVR--GHSNKQLLGVIFGRCNLSP 326
           ST+F+   A + GY  +Y+  Q++V      N Q+  V FG  N +P
Sbjct: 109 STKFSAGDATNVGYNLLYNGTQSAVACPASDNDQVYQVYFGAGNGNP 155


>SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 383

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = -3

Query: 460 STRFAETVADHFGYTSVYSSAQTSVR--GHSNKQLLGVIFGRCNLSP 326
           ST+F+   A + GY  +Y+  Q++V      N Q+  V FG  N +P
Sbjct: 109 STKFSAGDATNVGYNLLYNGTQSAVACPASDNDQVYQVYFGAGNGNP 155


>SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 568

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 597 LLSSPRDTSLVPGKIIYNKFKSVVSYAQSDLPLYTKKSI 713
           LLS  +D S V  K+++N    + ++   D+PL  K  I
Sbjct: 361 LLSPKQDLSQVDYKLVHNYLDKLANFQGIDVPLIQKTKI 399


>SPAC222.15 |meu13|SPAC821.01|Tat binding protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 216

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = +3

Query: 582 QVSWPLLSSPRDTSLVPGKIIYNKFKSVVSYAQSDLPLYTKKSIESASK 728
           QV+   L   RDT L+ GK +Y K +SV    Q DL   T + +    K
Sbjct: 48  QVAQKALEQLRDTGLIHGK-LYGK-QSVFVCLQDDLAAATPEELAEMEK 94


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 374 AMTSDRGLCGAVHTGVSKVIRNRLSE 451
           A+ SD  +C  V TG+S   ++RLS+
Sbjct: 191 AVLSDDSICEIVETGLSMCCQSRLSQ 216


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,569,481
Number of Sequences: 5004
Number of extensions: 75863
Number of successful extensions: 220
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)