Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_C12
(852 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10518| Best HMM Match : No HMM Matches (HMM E-Value=.) 160 1e-39
SB_28193| Best HMM Match : rve (HMM E-Value=2.1e-05) 35 0.073
SB_54647| Best HMM Match : Phage_tail_S (HMM E-Value=2.4) 33 0.39
SB_56228| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_10798| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.3
SB_6866| Best HMM Match : Peptidase_C48 (HMM E-Value=0.045) 29 6.3
SB_23672| Best HMM Match : PHD (HMM E-Value=0.00049) 28 8.4
>SB_10518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 328
Score = 160 bits (389), Expect = 1e-39
Identities = 69/150 (46%), Positives = 110/150 (73%)
Frame = +2
Query: 182 ISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQFYERAEVTPPEDDPK 361
+S+RL+SVKNIQKIT+SMKMVSAAK+ RAE++LK+AR YG+GA Y++ E+ +DPK
Sbjct: 62 VSLRLRSVKNIQKITKSMKMVSAAKFGRAEKELKSARAYGDGATALYDKVEIKQESEDPK 121
Query: 362 QLFVAMTSDRGLCGAVHTGVSKVIRNRLSEPGAENIKVICVGDKSRGILQRLYGKHIISV 541
L V ++SDRGLCG +H+G++K ++ ++ + N+ ++ GDK++ IL R GK+++
Sbjct: 122 HLIVVLSSDRGLCGGIHSGLAKAVKASIAGNPSRNVGIVSFGDKTKQILSRTLGKNMLMS 181
Query: 542 ANEIGRLPPTFLDASQLATAILTSGYEFGS 631
++G+ PP F +A+ LA IL +G++F +
Sbjct: 182 FMDVGKKPPLFCEATFLAQEILDAGFDFNT 211
Score = 35.1 bits (77), Expect = 0.073
Identities = 16/44 (36%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Frame = +3
Query: 633 GKIIYNKFKSVVSYAQSDLPLYTKKSIESAS--KLTAYDSLDSD 758
G + YN F+SVVS+ S +Y+ ++ +A+ +++YD LDS+
Sbjct: 212 GDMFYNVFRSVVSFRASTKSIYSFDNLNNAASDSMSSYDELDSE 255
>SB_28193| Best HMM Match : rve (HMM E-Value=2.1e-05)
Length = 983
Score = 35.1 bits (77), Expect = 0.073
Identities = 23/77 (29%), Positives = 41/77 (53%)
Frame = -3
Query: 658 LNLL*MIFPGTKLVSRGEDSSGQLTCVQESRWETSDLISNTNDVLSVQSLQDTARFISHT 479
++LL + FPG LV R G + +++R+ET+ L S T D L+ L+ TA+ +
Sbjct: 238 VSLLKITFPGETLVERENGRQGPDSRRRQTRYETA-LASRTTDALADSFLKLTAKLVGMA 296
Query: 478 DHLDVLSTRFAETVADH 428
+D + + V+D+
Sbjct: 297 LPIDSVVDLHNDLVSDY 313
>SB_54647| Best HMM Match : Phage_tail_S (HMM E-Value=2.4)
Length = 571
Score = 32.7 bits (71), Expect = 0.39
Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 7/95 (7%)
Frame = +2
Query: 356 PKQLFVAMTSDRG-LCGAVHTGVSKV------IRNRLSEPGAENIKVICVGDKSRGILQR 514
P++LF+ S G + AV+TG+S+V +R + IK + D+ +G +
Sbjct: 447 PRRLFIIDHSLEGWITNAVYTGISRVRLAGQIVRVIPPDDTPARIKRYAIDDRQKGRTKY 506
Query: 515 LYGKHIISVANEIGRLPPTFLDASQLATAILTSGY 619
H+++V N +G + + T +L GY
Sbjct: 507 TGPHHVLTVDNVLGMIADAEKKYTLCGTQLLLQGY 541
>SB_56228| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 969
Score = 30.3 bits (65), Expect = 2.1
Identities = 23/94 (24%), Positives = 44/94 (46%), Gaps = 6/94 (6%)
Frame = +2
Query: 356 PKQLFVAMTSDRG-LCGAVHTGVSKVIRNRLSEPGAEN-----IKVICVGDKSRGILQRL 517
P++LF+ + G + AV+TG+ +V RL +E IK + D+ +G +
Sbjct: 842 PRRLFIIDHNLEGWIANAVYTGIFRV---RLQATPSEELIIARIKRYAIDDRQKGRTKYT 898
Query: 518 YGKHIISVANEIGRLPPTFLDASQLATAILTSGY 619
H+++V + +G + T + +L GY
Sbjct: 899 GSHHVLTVDHVLGMIAETEKKCTVCGAQLLLQGY 932
>SB_10798| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 888
Score = 28.7 bits (61), Expect = 6.3
Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 10/98 (10%)
Frame = +2
Query: 356 PKQLFVAMTSDRG-LCGAVHTGVSKVIRN----RLSEPGAEN-----IKVICVGDKSRGI 505
P++LF+ S G + AV+TG+S+V R++ P + IK + D+ +G
Sbjct: 754 PRRLFIIDHSLEGWITNAVYTGISRVRHTDQIVRVTPPPPPDNTPARIKRYAIDDRQKGR 813
Query: 506 LQRLYGKHIISVANEIGRLPPTFLDASQLATAILTSGY 619
+ H+++V + +G + + T L GY
Sbjct: 814 TKYTGSHHLLTVYHVLGMIADAEKKCTVCGTQRLLQGY 851
>SB_6866| Best HMM Match : Peptidase_C48 (HMM E-Value=0.045)
Length = 1050
Score = 28.7 bits (61), Expect = 6.3
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = -3
Query: 244 HHLHGLCDFLDIFHRFKTDGNGLQSSHIPVWL 149
+H+ C+ + F+R + G G H+ VWL
Sbjct: 595 NHIRNRCNVENFFYRIEFQGRGTAHVHLLVWL 626
>SB_23672| Best HMM Match : PHD (HMM E-Value=0.00049)
Length = 370
Score = 28.3 bits (60), Expect = 8.4
Identities = 19/62 (30%), Positives = 29/62 (46%)
Frame = -3
Query: 550 LISNTNDVLSVQSLQDTARFISHTDHLDVLSTRFAETVADHFGYTSVYSSAQTSVRGHSN 371
LI N DV +D+ + HTD+ V +R E V DH T+ + + S + S+
Sbjct: 62 LIRNNADVDEGME-EDSQMPLDHTDNTPVTHSREFEAVDDHTPPTTPTETTRKSAKRQSD 120
Query: 370 KQ 365
Q
Sbjct: 121 SQ 122
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,819,784
Number of Sequences: 59808
Number of extensions: 633148
Number of successful extensions: 1712
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1712
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2419355818
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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