Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_C11
(851 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 78 2e-15
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 75 1e-14
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 75 2e-14
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 73 5e-14
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 71 2e-13
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 71 2e-13
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 71 2e-13
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 71 3e-13
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 69 1e-12
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 67 3e-12
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 66 6e-12
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 65 1e-11
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 65 1e-11
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 63 6e-11
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 60 5e-10
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 59 7e-10
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 58 2e-09
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 56 6e-09
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 56 6e-09
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 54 3e-08
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 54 3e-08
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 52 1e-07
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 50 6e-07
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang... 31 0.27
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom... 30 0.36
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos... 29 0.63
SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase |Schizosaccharo... 27 2.6
SPBC14F5.04c |pgk1||phosphoglycerate kinase|Schizosaccharomyces ... 27 3.4
SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom... 27 4.5
SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|ch... 27 4.5
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c... 27 4.5
SPAC637.11 |suv3||ATP-dependent RNA helicase Suv3|Schizosaccharo... 27 4.5
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po... 27 4.5
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa... 27 4.5
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 27 4.5
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|... 26 7.8
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces... 26 7.8
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 26 7.8
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran... 26 7.8
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 77.8 bits (183), Expect = 2e-15
Identities = 55/164 (33%), Positives = 84/164 (51%)
Frame = +1
Query: 100 VIAAVASTDIKPVNNAPQAIIIEPSRELAEQTCTQFTKFKKYLENPKIRELLVVGGINVK 279
VI ++ D K + Q +I+ P+RELA QT K++ ++ ++ GG ++
Sbjct: 99 VIPSLEKVDTK--KSKIQTLILVPTRELALQTSQVCKTLGKHMN---VKVMVTTGGTTLR 153
Query: 280 DQINQLNCGVDVVVGTPGRLEDLIQGGYLSLTHCRFFVLDEADGLLKAGYGELIERLHRQ 459
D I +LN V +VVGTPGR+ DL G + C FV+DEAD LL + +IE+L
Sbjct: 154 DDIIRLNDTVHIVVGTPGRVLDLAGKGVADFSECTTFVMDEADKLLSPEFTPIIEQLLSY 213
Query: 460 IPKITSDGRRLQMVVCSATLHAFQVKKMAEKLMHFPTWVDLKGE 591
PK Q+ + SAT VK +K ++ P ++L E
Sbjct: 214 FPK------NRQISLYSATFPLI-VKNFMDKHLNKPYEINLMDE 250
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 74.9 bits (176), Expect = 1e-14
Identities = 40/112 (35%), Positives = 61/112 (54%)
Frame = +1
Query: 115 ASTDIKPVNNAPQAIIIEPSRELAEQTCTQFTKFKKYLENPKIRELLVVGGINVKDQINQ 294
A +P P +I+ P+REL C + +K+ +R V GG +++ QI Q
Sbjct: 245 AGMGYRPRKAYPTTLILAPTRELV---CQIHEESRKFCYRSWVRPCAVYGGADIRAQIRQ 301
Query: 295 LNCGVDVVVGTPGRLEDLIQGGYLSLTHCRFFVLDEADGLLKAGYGELIERL 450
++ G D++ TPGRL DLI G +SL + +F VLDEAD +L G+ I +
Sbjct: 302 IDQGCDLLSATPGRLVDLIDRGRISLANIKFLVLDEADRMLDMGFEPQIRHI 353
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 74.5 bits (175), Expect = 2e-14
Identities = 52/187 (27%), Positives = 86/187 (45%), Gaps = 4/187 (2%)
Frame = +1
Query: 142 NAPQAIIIEPSRELAEQTCTQFTKFKKYLENPKIRELLVVGGINVKDQINQLNCGVDVVV 321
+ P+ +++ P+RELA QT + ++ ++ ++V GG +Q V++
Sbjct: 235 SVPRVLVVSPTRELAIQT---YENLNSLIQGTNLKAVVVYGGAPKSEQARAAK-NASVII 290
Query: 322 GTPGRLEDLIQGGYLSLTHCRFFVLDEADGLLKAGYGELIERLHRQIPKITSDGRRLQMV 501
GTPGRL DLI G + + + VLDEAD +L G+ + I + P T +G R Q V
Sbjct: 291 GTPGRLLDLINDGSIDCSQVGYLVLDEADRMLDTGFEQDIRNIISHTPDPTRNGSR-QTV 349
Query: 502 VCSATLHAFQVKKMAEKLMHFPTWVDLKGED--AVPETXXXXXXXXDPQKDSSW--QTLR 669
SAT V+ +A + P + + ++ A DP+ LR
Sbjct: 350 FFSATWPE-SVRALAATFLKDPVKITIGSDELAASQNITQIVEILDDPRSKERMLDNLLR 408
Query: 670 KHVQTDG 690
KH+ + G
Sbjct: 409 KHLSSGG 415
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 72.9 bits (171), Expect = 5e-14
Identities = 54/154 (35%), Positives = 79/154 (51%), Gaps = 3/154 (1%)
Frame = +1
Query: 148 PQAIIIEPSRELAEQTCTQFTKFKKYLENPKIRELLVVGGINVKDQINQLNCGVDVVVGT 327
P AII+ P+RELA Q F + K +L+ IR GG +KDQI L G ++VV T
Sbjct: 492 PIAIIMTPTRELAVQI---FRECKPFLKLLNIRACCAYGGAPIKDQIADLKRGAEIVVCT 548
Query: 328 PGRLEDLIQ---GGYLSLTHCRFFVLDEADGLLKAGYGELIERLHRQIPKITSDGRRLQM 498
PGR+ D++ G +L C + VLDEAD + G+ + R+ I I D Q
Sbjct: 549 PGRMIDVLSANAGRVTNLHRCTYLVLDEADRMFDLGFEPQVMRI---INNIRPD---RQT 602
Query: 499 VVCSATLHAFQVKKMAEKLMHFPTWVDLKGEDAV 600
V+ SAT ++ +A K++ P + + G V
Sbjct: 603 VLFSATFPR-AMEALARKVLKKPVEITVGGRSVV 635
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 70.9 bits (166), Expect = 2e-13
Identities = 50/152 (32%), Positives = 77/152 (50%)
Frame = +1
Query: 151 QAIIIEPSRELAEQTCTQFTKFKKYLENPKIRELLVVGGINVKDQINQLNCGVDVVVGTP 330
QA+I+ P+RELA+Q + + +GG V+D + L GV VVVGTP
Sbjct: 89 QALILAPTRELAQQIQKVVVALGDLMN---VECHACIGGTLVRDDMAALQAGVHVVVGTP 145
Query: 331 GRLEDLIQGGYLSLTHCRFFVLDEADGLLKAGYGELIERLHRQIPKITSDGRRLQMVVCS 510
GR+ D+IQ L + FVLDEAD +L G+ + I + + +P Q+V+ S
Sbjct: 146 GRVHDMIQRRALPTDAVQMFVLDEADEMLSRGFKDQIYDIFQLLPPTA------QVVLLS 199
Query: 511 ATLHAFQVKKMAEKLMHFPTWVDLKGEDAVPE 606
AT+ V ++ K M P + +K ++ E
Sbjct: 200 ATMPQ-DVLEVTTKFMRDPIRILVKKDELTLE 230
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 70.9 bits (166), Expect = 2e-13
Identities = 51/152 (33%), Positives = 79/152 (51%)
Frame = +1
Query: 151 QAIIIEPSRELAEQTCTQFTKFKKYLENPKIRELLVVGGINVKDQINQLNCGVDVVVGTP 330
QA+I+ P+RELA Q ++ ++ +GG +V + I +L+ G VV GTP
Sbjct: 91 QALILSPTRELAVQIQNVVLALGDHMN---VQCHACIGGTSVGNDIKKLDYGQHVVSGTP 147
Query: 331 GRLEDLIQGGYLSLTHCRFFVLDEADGLLKAGYGELIERLHRQIPKITSDGRRLQMVVCS 510
GR+ D+I+ L + + +LDEAD LL G+ E I ++R +P T Q+VV S
Sbjct: 148 GRVTDMIRRRNLRTRNVKMLILDEADELLNQGFKEQIYDIYRYLPPGT------QVVVVS 201
Query: 511 ATLHAFQVKKMAEKLMHFPTWVDLKGEDAVPE 606
ATL V +M K P + +K ++ E
Sbjct: 202 ATLPQ-DVLEMTNKFTTNPVRILVKRDELTLE 232
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 70.9 bits (166), Expect = 2e-13
Identities = 43/138 (31%), Positives = 69/138 (50%), Gaps = 3/138 (2%)
Frame = +1
Query: 58 IAISQAPKENVKQNVIAAVASTDIKPV---NNAPQAIIIEPSRELAEQTCTQFTKFKKYL 228
+ IS + A+ + +P+ + P +++ P+RELA Q + TKF K
Sbjct: 163 VGISATGSGKTLSYCLPAIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGK-- 220
Query: 229 ENPKIRELLVVGGINVKDQINQLNCGVDVVVGTPGRLEDLIQGGYLSLTHCRFFVLDEAD 408
+ +IR V GG+ QI L GV++ + TPGRL D++ +L + VLDEAD
Sbjct: 221 -SSRIRNTCVYGGVPRGPQIRDLIRGVEICIATPGRLLDMLDSNKTNLRRVTYLVLDEAD 279
Query: 409 GLLKAGYGELIERLHRQI 462
+L G+ I ++ QI
Sbjct: 280 RMLDMGFEPQIRKIVDQI 297
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 70.5 bits (165), Expect = 3e-13
Identities = 37/106 (34%), Positives = 62/106 (58%)
Frame = +1
Query: 148 PQAIIIEPSRELAEQTCTQFTKFKKYLENPKIRELLVVGGINVKDQINQLNCGVDVVVGT 327
P A+++ P+RELA+Q + KF + L R + VVGG ++Q Q++ G +VV T
Sbjct: 326 PYAVVLAPTRELAQQIQVEGNKFAEPLG---FRCVSVVGGHAFEEQSFQMSQGAHIVVAT 382
Query: 328 PGRLEDLIQGGYLSLTHCRFFVLDEADGLLKAGYGELIERLHRQIP 465
PGRL D ++ L+ C + V+DEAD +L G+ + + ++ +P
Sbjct: 383 PGRLLDCLERRLFVLSQCTYVVMDEADRMLDMGFEDDVNKILSSLP 428
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 68.5 bits (160), Expect = 1e-12
Identities = 52/176 (29%), Positives = 86/176 (48%), Gaps = 4/176 (2%)
Frame = +1
Query: 52 GYIAISQAPKENVKQNVIAAVASTDIKPVNNAPQAIIIEPSRELAEQTCTQFTKFKKYLE 231
G + QA K V I+PV+ +++ +RELA Q ++ +F KYL
Sbjct: 88 GTDVLCQAKSGMGKTAVFVLSTLQQIEPVDGEVSVLVLCHTRELAFQIKNEYARFSKYL- 146
Query: 232 NPKIRELLVVGGINVKDQINQL---NCGVDVVVGTPGRLEDLIQGGYLSLTHCRFFVLDE 402
P +R + GGIN+K + + +VV TPGRL L++ L + + FVLDE
Sbjct: 147 -PDVRTAVFYGGINIKQDMEAFKDKSKSPHIVVATPGRLNALVREKILKVNSVKHFVLDE 205
Query: 403 ADGLLKA-GYGELIERLHRQIPKITSDGRRLQMVVCSATLHAFQVKKMAEKLMHFP 567
D LL++ I+ + R P + Q+++ SATL + +++ + +K M P
Sbjct: 206 CDKLLESVDMRRDIQEVFRATPP------QKQVMMFSATL-SNEIRPICKKFMQNP 254
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 67.3 bits (157), Expect = 3e-12
Identities = 57/186 (30%), Positives = 85/186 (45%), Gaps = 2/186 (1%)
Frame = +1
Query: 43 PPNGYIAISQAPKENVKQNVIAAVASTDIKPVNNAPQAIIIEPSRELAEQTCTQFTKFKK 222
PP I SQ+ + ++ D PQAI + PSRELA Q T+ K
Sbjct: 152 PPRNMIGQSQSGTGKTAAFALTMLSRVDASVPK--PQAICLAPSRELARQIMDVVTEMGK 209
Query: 223 YLENPKIRELLVVGGINVKDQINQ-LNCGVDVVVGTPGRLEDLIQGGYLSLTHCRFFVLD 399
Y E V +KD + + +V+GTPG + DL++ L + FVLD
Sbjct: 210 YTE--------VKTAFGIKDSVPKGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLD 261
Query: 400 EADGLL-KAGYGELIERLHRQIPKITSDGRRLQMVVCSATLHAFQVKKMAEKLMHFPTWV 576
EAD +L + G G+ R+ +P R Q+V+ SAT + +V+K AE+ +
Sbjct: 262 EADNMLDQQGLGDQSMRIKHLLP------RNTQIVLFSATF-SERVEKYAERFAPNANEI 314
Query: 577 DLKGED 594
LK E+
Sbjct: 315 RLKTEE 320
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 66.1 bits (154), Expect = 6e-12
Identities = 39/106 (36%), Positives = 61/106 (57%), Gaps = 1/106 (0%)
Frame = +1
Query: 139 NNAPQAIIIEPSRELAEQTCTQFTKFKKYLENPKIRELLVVGGINVKDQINQLNCGVDVV 318
N+ +A+I+ P+RELA QT F K + +R + +VGG+++++Q + L+ D+V
Sbjct: 137 NSNTRALILSPNRELALQTVKVVKDFSKGTD---LRSVAIVGGVSLEEQFSLLSGKPDIV 193
Query: 319 VGTPGRLEDLIQGGYLSLTHCRFFVLDEADGLLKAGY-GELIERLH 453
V TPGR L L L+ + V DEAD L + G+ +L E LH
Sbjct: 194 VATPGRFLHLKVEMKLELSSIEYVVFDEADRLFEMGFAAQLTEILH 239
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 65.3 bits (152), Expect = 1e-11
Identities = 40/102 (39%), Positives = 56/102 (54%), Gaps = 2/102 (1%)
Frame = +1
Query: 151 QAIIIEPSRELAEQTCTQFTKFKKYLENPKIRELLVVGGINVKDQINQLNCGVDVVVGTP 330
QA+++ P+RELA Q C F K +P IR + + GG+ V+ Q LN VVV TP
Sbjct: 194 QALVVAPTRELAHQICQHFELIKP---SPNIRVMSITGGLAVQKQQRLLNKHPHVVVATP 250
Query: 331 GRLEDLIQGGYL--SLTHCRFFVLDEADGLLKAGYGELIERL 450
GRL +I L + + VLDEAD LL+ + E + +L
Sbjct: 251 GRLWSVINENNLTGNFKKIKCLVLDEADRLLQKSHFEELSKL 292
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 64.9 bits (151), Expect = 1e-11
Identities = 50/172 (29%), Positives = 92/172 (53%), Gaps = 4/172 (2%)
Frame = +1
Query: 106 AAVASTDIKPVNNAPQ---AIIIEPSRELAEQTCTQFTKFKKYLENPKIRELLVVGGINV 276
AA A I+ + N P A+++ P+RELA Q QF + +R +++VGG+++
Sbjct: 98 AAFALPVIQELWNNPSPFFAVVLAPTRELAYQISEQFEAIGGSIG---VRSVVIVGGMDM 154
Query: 277 KDQINQLNCGVDVVVGTPGRLEDLIQGGY-LSLTHCRFFVLDEADGLLKAGYGELIERLH 453
Q L+ V+V TPGRL D ++ SL + ++ ++DEAD LL +G +I+++
Sbjct: 155 VTQAVALSKKPHVLVCTPGRLMDHLENTKGFSLKNLKYLIMDEADRLLDMDFGPIIDKIL 214
Query: 454 RQIPKITSDGRRLQMVVCSATLHAFQVKKMAEKLMHFPTWVDLKGEDAVPET 609
+ IP + ++ SAT+ + +V+K+ +H P V + + + +T
Sbjct: 215 KIIP------HERRTLLFSATMTS-KVEKLQRASLHQPVRVAVSSKFSTVDT 259
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 62.9 bits (146), Expect = 6e-11
Identities = 46/145 (31%), Positives = 71/145 (48%), Gaps = 4/145 (2%)
Frame = +1
Query: 154 AIIIEPSRELAEQTCTQFTKFKKYLENPKIRELLVVGGINVKDQINQLNCGVDVVVGTPG 333
A+I+ P+RELA Q QF N ++ L+VGG+++ Q L+ VVV TPG
Sbjct: 78 ALILTPTRELAIQIDEQFAALGA---NLNLKHALIVGGMDMIRQSIDLSKRPHVVVATPG 134
Query: 334 RLEDLIQGG----YLSLTHCRFFVLDEADGLLKAGYGELIERLHRQIPKITSDGRRLQMV 501
RL DLI+ L +F V+DEAD LL + + ++ +P S+ R+ +
Sbjct: 135 RLADLIRSNGEETIAGLRRIKFLVMDEADRLLSPTFADDLDDCFSVLP--ASEDRQTLLF 192
Query: 502 VCSATLHAFQVKKMAEKLMHFPTWV 576
+ T Q+K +K P W+
Sbjct: 193 TATVTDAIRQLKYQPQKNNKPPLWL 217
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 59.7 bits (138), Expect = 5e-10
Identities = 44/143 (30%), Positives = 74/143 (51%), Gaps = 8/143 (5%)
Frame = +1
Query: 154 AIIIEPSRELAEQTCTQFTKFKKYLENPKIRELLVVGGINVKDQINQLNCGVDVVVGTPG 333
A+I+ P+REL +Q K + I V+GG K + ++ GV++++GTPG
Sbjct: 219 AVIMAPTRELCQQIYNVANKLNNNPLSHWIVSCNVIGGEKKKSEKARIRKGVNILIGTPG 278
Query: 334 RLEDLIQG-GYLSLTHCRFFVLDEADGLLKAGYGE----LIERLHRQ---IPKITSDGRR 489
RL D ++ L ++ R+ VLDE D L+ G+ E ++ L Q I K S R
Sbjct: 279 RLADHLENTEALDVSQVRWVVLDEGDRLMDMGFEETLTKILSYLESQSSIIKKDLSIPSR 338
Query: 490 LQMVVCSATLHAFQVKKMAEKLM 558
++CSAT+ VK++++ +
Sbjct: 339 KVTMLCSATMKD-TVKRLSDSAL 360
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 59.3 bits (137), Expect = 7e-10
Identities = 47/146 (32%), Positives = 71/146 (48%), Gaps = 7/146 (4%)
Frame = +1
Query: 46 PNGYIAISQAPKENVKQNVIAAVASTDI---KPVNNAPQ--AIIIEPSRELAEQTCTQFT 210
PN A+ QA K VA D+ KP N+ + ++I+ P+RELA Q F
Sbjct: 74 PNEENAVVQAKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELALQI---FE 130
Query: 211 KFKKYLENPKIRELLVVGGINVKDQINQLNCG-VDVVVGTPGRLEDLIQGG-YLSLTHCR 384
+ +K IR +GG + + N + G ++++ TPGRLED +Q L
Sbjct: 131 EARKLTYGTGIRVSYAIGGNSKMREENAIRRGNANLLIATPGRLEDHLQNPRILESLSTD 190
Query: 385 FFVLDEADGLLKAGYGELIERLHRQI 462
F+LDEAD L+ G+ E I +H +
Sbjct: 191 SFILDEADRLMDMGFAESILNIHEAV 216
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 58.0 bits (134), Expect = 2e-09
Identities = 50/131 (38%), Positives = 72/131 (54%), Gaps = 2/131 (1%)
Frame = +1
Query: 130 KPVNNAPQAIIIEPSRELAEQTCTQFTKFKKYLENPKIRELLVVGGINVKDQINQLNCGV 309
KP N III P+RELA Q F K+ L+ +V+GG N + + ++L GV
Sbjct: 157 KP-RNGTGVIIISPTRELALQI---FGVAKELLKYHHQTFGIVIGGANRRAEADKLVKGV 212
Query: 310 DVVVGTPGRLEDLIQG--GYLSLTHCRFFVLDEADGLLKAGYGELIERLHRQIPKITSDG 483
+++V TPGRL D +Q G++ + R V+DEAD +L+ G+ E RQI KI
Sbjct: 213 NLLVATPGRLLDHLQNTKGFV-FRNLRSLVIDEADRILEIGF----EDEMRQIMKILPSE 267
Query: 484 RRLQMVVCSAT 516
R Q ++ SAT
Sbjct: 268 NR-QTLLFSAT 277
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 56.0 bits (129), Expect = 6e-09
Identities = 32/107 (29%), Positives = 59/107 (55%), Gaps = 1/107 (0%)
Frame = +1
Query: 151 QAIIIEPSRELAEQTCTQFTKFKKYLENPKIRELLVVGGINVKDQINQLNCGVDVVVGTP 330
+ +I+ P+RELA Q + TK + + I L +GG+++K Q +L D+V+ TP
Sbjct: 332 RVLILCPTRELAMQCHSVATKIASFTD---IMVCLCIGGLSLKLQEQELRKRPDIVIATP 388
Query: 331 GRLEDLIQGGY-LSLTHCRFFVLDEADGLLKAGYGELIERLHRQIPK 468
GR D ++ ++ + V+DEAD +L+ G+ + + + + PK
Sbjct: 389 GRFIDHMRNSQGFTVENIEIMVMDEADRMLEDGFADELNEIIQACPK 435
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 56.0 bits (129), Expect = 6e-09
Identities = 35/110 (31%), Positives = 58/110 (52%), Gaps = 6/110 (5%)
Frame = +1
Query: 151 QAIIIEPSRELAEQTCTQFTKFKKYLENPKIRELLVVGGINVKDQINQLN-----CGVDV 315
+ ++I P+REL Q F + Y+ ++ G +++ + QLN C +DV
Sbjct: 207 RCVVIVPTRELTVQVAKTF---EYYMSGAGLQVCAWTGQKSLRHETYQLNGDENECRIDV 263
Query: 316 VVGTPGRLEDLIQGGY-LSLTHCRFFVLDEADGLLKAGYGELIERLHRQI 462
+V TPGRL D I+ SL H R+ V+DEAD LL + + ++ + +I
Sbjct: 264 LVSTPGRLVDHIRNDESFSLQHLRYMVIDEADRLLDQSFQDWVDTVMMEI 313
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 53.6 bits (123), Expect = 3e-08
Identities = 35/107 (32%), Positives = 53/107 (49%)
Frame = +1
Query: 154 AIIIEPSRELAEQTCTQFTKFKKYLENPKIRELLVVGGINVKDQINQLNCGVDVVVGTPG 333
A+++ P+RELA+Q K + IR + V + Q L D+V+ TP
Sbjct: 91 ALLLVPTRELAQQVYNVLEKLTAFCSK-HIRFINVATNSSDTVQRPLLLDLPDIVIATPS 149
Query: 334 RLEDLIQGGYLSLTHCRFFVLDEADGLLKAGYGELIERLHRQIPKIT 474
R + G L L +F V+DEAD +L GY E ++ L R +P+ T
Sbjct: 150 RCVVHVASGVLPLDKLKFLVIDEADLMLSFGYNEDMKTLSRSLPRGT 196
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 53.6 bits (123), Expect = 3e-08
Identities = 37/100 (37%), Positives = 54/100 (54%)
Frame = +1
Query: 151 QAIIIEPSRELAEQTCTQFTKFKKYLENPKIRELLVVGGINVKDQINQLNCGVDVVVGTP 330
+AII+ P+REL EQ Q K + + KI EL ++++ +L D+ +GTP
Sbjct: 117 RAIIVAPTRELCEQIYRQAEKLS-FGTSLKIIELSK-SNEKIQEKAPKLREKYDMCIGTP 174
Query: 331 GRLEDLIQGGYLSLTHCRFFVLDEADGLLKAGYGELIERL 450
RL IQ G LS FFV+DEAD L + G+ E + +
Sbjct: 175 MRLVQAIQTG-LSFEKVEFFVMDEADRLFEPGFIEQTDHI 213
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 52.0 bits (119), Expect = 1e-07
Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 7/112 (6%)
Frame = +1
Query: 154 AIIIEPSRELAEQTCTQFTKFKKY----LENPK--IRELLVVG-GINVKDQINQLNCGVD 312
A+I+ P+RELA Q + Y L+ K + ++ + G G D +
Sbjct: 75 ALIVAPTRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIGGKGTLTNDLASFREKNPS 134
Query: 313 VVVGTPGRLEDLIQGGYLSLTHCRFFVLDEADGLLKAGYGELIERLHRQIPK 468
VV+GTPGRL +++ ++S H +LDEAD L+ G+ ++ + Q+PK
Sbjct: 135 VVIGTPGRLNEMLS--HISSKHLEILILDEADTLIDMGFQRTLQSIISQLPK 184
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 49.6 bits (113), Expect = 6e-07
Identities = 40/148 (27%), Positives = 72/148 (48%), Gaps = 1/148 (0%)
Frame = +1
Query: 154 AIIIEPSRELAEQTCTQFTKFKKYLENPKIRELLVVGGINVKDQINQLNCGVDVVVGTPG 333
A++I P+RELA QT K + L++GG N K++ +L+ ++++V TPG
Sbjct: 114 ALVISPTRELAIQTFETLVKIGRL---HSFSAGLIIGGNNYKEEKERLS-RMNILVCTPG 169
Query: 334 R-LEDLIQGGYLSLTHCRFFVLDEADGLLKAGYGELIERLHRQIPKITSDGRRLQMVVCS 510
R L+ + Q + + +LDEAD +L G+ ++ + +P Q ++ S
Sbjct: 170 RLLQHIDQAVNFDTSGLQMLILDEADRILDMGFRTTLDAIVSSLPV------HRQTMLFS 223
Query: 511 ATLHAFQVKKMAEKLMHFPTWVDLKGED 594
AT VK +A + P ++ + D
Sbjct: 224 AT-QTKSVKDLARLSLQNPDFISVHEND 250
>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 30.7 bits (66), Expect = 0.27
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -1
Query: 422 AFKRPSASSKTKKRQCVSD-KYPPWIRSSKRPGVPTTTSTP 303
+ K PS+ + K R S ++P W R S P V +TTS+P
Sbjct: 140 SLKSPSSINSAKLRASRSFFRFPKWSRKSWNPDVNSTTSSP 180
>SPCC63.03 |||DNAJ domain protein, DNAJC11
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 642
Score = 30.3 bits (65), Expect = 0.36
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = -3
Query: 471 YLRDLTMEAFNQFSVTRFQETISLVQDEETAMRQ**VSSLDKVFQASRRPNDDIHPTV 298
+ DL +FN FS F + S DE+ + S L V +AS R N + P++
Sbjct: 176 FSNDLKKPSFNSFSSGSFDDEFSAPSDEDEGNHK-TSSRLSIVTEASMRQNSKLQPSI 232
>SPAC926.09c |fas1||fatty acid synthase beta subunit
Fas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2073
Score = 29.5 bits (63), Expect = 0.63
Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 7/77 (9%)
Frame = -3
Query: 816 YGPVH-------FVFPDGAHTVFSFQYXNSFRQRFRRSVAASNVVLSVHTVGLHVLAQCL 658
Y P+H FV G H + Y ++ +RF + AA NV V + + L
Sbjct: 1576 YNPIHVSPTFAAFVELPGTHGITHGMYTSAAARRFVETYAAQNVPERVKHYEVTFVNMVL 1635
Query: 657 PRAVLLRVYVHNNMVYG 607
P L+ H M+ G
Sbjct: 1636 PNTELITKLSHTGMING 1652
>SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 571
Score = 27.5 bits (58), Expect = 2.6
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +1
Query: 550 KLMHFPTWVDLKGEDAVPET 609
KL HFPT+V G+ A+ ET
Sbjct: 239 KLTHFPTYVTPMGKSAIDET 258
>SPBC14F5.04c |pgk1||phosphoglycerate kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 414
Score = 27.1 bits (57), Expect = 3.4
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 214 FKKYLENPKIRELLVVGGINVKDQINQLNCGVDVV 318
F K LENP L ++GG V D+I ++ +D V
Sbjct: 194 FSKALENPARPFLAILGGAKVADKIQLIDNLLDKV 228
>SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1185
Score = 26.6 bits (56), Expect = 4.5
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 265 GINVKDQINQLNCGVDVVVGTPGRLE 342
G K + + CGV VV GTPG +E
Sbjct: 148 GDKTKARAIAIRCGVPVVPGTPGPVE 173
>SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 667
Score = 26.6 bits (56), Expect = 4.5
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 144 IIHWFNIC*SYSGYNILLDVFFGCLTDC 61
++HW +YS NI+ DV GC T C
Sbjct: 65 VLHWLP---NYSLRNIIWDVLAGCSTAC 89
>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1142
Score = 26.6 bits (56), Expect = 4.5
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Frame = +1
Query: 715 SGNTTPETLS--EAVXILKGKYCVRAIREHKMDRAII 819
SG++TP ++S + + I KG V+AIR + AII
Sbjct: 53 SGSSTPSSISIEKEIKISKGNVIVKAIRSWSLYVAII 89
>SPAC637.11 |suv3||ATP-dependent RNA helicase
Suv3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 26.6 bits (56), Expect = 4.5
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +1
Query: 139 NNAPQAIIIEPSRELAEQTCTQFTKFKKYLENPKIRELLVVGGINVKDQINQLNCGV 309
++ PQ +I + +LA+ T T F + L I L + G+ +KD+I L C V
Sbjct: 495 DDIPQKLIFDRYFKLAKTT-TPFVVSEGALSTFIIEYLDHIKGLTIKDKIKLLGCPV 550
>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 594
Score = 26.6 bits (56), Expect = 4.5
Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Frame = +1
Query: 703 DNIRSGNTTPETLS--EAVXILKGKYCVRAIREHKMDRAIIFCRTXWI 840
D +RS + +T S E + ++ +YC+R + + KMD ++ R+ W+
Sbjct: 514 DLVRSLDENLKTKSGPEKLYLIMARYCLRCVYDDKMD-SLWNSRSFWV 560
>SPBC418.02 |||NatA N-acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 26.6 bits (56), Expect = 4.5
Identities = 11/32 (34%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = +1
Query: 361 YLSLTHCRFFVLDEADGLLKAG-YGELIERLH 453
YL+ T C +F++++ + LL+ YG ++R H
Sbjct: 470 YLAETECVWFLVEDGESLLRQKLYGLALKRFH 501
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 26.6 bits (56), Expect = 4.5
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Frame = +1
Query: 79 KENVKQNVIAAVASTDIKPVNNAPQAIIIEPSRELAEQTCTQFTKF---KKYLENPKIRE 249
+EN++ +IAA T P N +AI IE R + + K +KYL + K E
Sbjct: 922 QENLQSKLIAANKDTTQNPDNVEVEAISIELERTKEKLRMAELEKSNIQQKYLASEKTLE 981
Query: 250 LL 255
++
Sbjct: 982 MM 983
>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 25.8 bits (54), Expect = 7.8
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = -1
Query: 362 YPPWIRSSKRPGVPTTTSTPQ 300
+P ++ +K+P +PTT TP+
Sbjct: 83 FPAQLKENKKPKLPTTPQTPK 103
>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1639
Score = 25.8 bits (54), Expect = 7.8
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = +1
Query: 10 FNFGATPFKXPPPNGYIAISQAPKENVKQN 99
F TP K PP+G + P E KQ+
Sbjct: 1221 FTMDKTPLKFEPPDGCCPVCFCPYEKSKQS 1250
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 25.8 bits (54), Expect = 7.8
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = -1
Query: 260 TTSSSRILGFSKYFLNFVNCVQVCSANSLDGSIIIACG 147
T +SSRILG + F N ++ V SL ++I+ CG
Sbjct: 318 TNTSSRILGIPQLFQNCISECDVDIRASLLNNVIV-CG 354
>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 516
Score = 25.8 bits (54), Expect = 7.8
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +1
Query: 220 KYLENPKIRELLVVGGINVKDQINQLNCGVDVVVGTPGRLEDLI 351
K+L+N VVGG+NV D + ++ + P +LED+I
Sbjct: 384 KHLDNKHTIFGRVVGGLNVLDALEKVPTNSNDHPKLPIKLEDII 427
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,674,620
Number of Sequences: 5004
Number of extensions: 79151
Number of successful extensions: 301
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 274
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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