Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_C11
         (851 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       73   3e-15
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       27   0.29 
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    24   2.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   3.6  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   3.6  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             23   3.6  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         22   6.2  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    22   6.2  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    22   6.2  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 72.9 bits (171), Expect = 3e-15
 Identities = 37/101 (36%), Positives = 58/101 (57%)
 Frame = +1

Query: 148 PQAIIIEPSRELAEQTCTQFTKFKKYLENPKIRELLVVGGINVKDQINQLNCGVDVVVGT 327
           PQ +I+ P+REL  Q   Q  KF     N  ++ ++  GG +V  Q  +L+ G  ++V T
Sbjct: 274 PQVVIVSPTRELTIQIWQQIVKFSL---NSILKTVVAYGGTSVMHQRGKLSAGCHILVAT 330

Query: 328 PGRLEDLIQGGYLSLTHCRFFVLDEADGLLKAGYGELIERL 450
           PGRL D ++ G +  +  +F VLDEAD +L  G+   IE++
Sbjct: 331 PGRLLDFVEKGRVKFSSVQFLVLDEADRMLDMGFLPSIEKM 371


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 26.6 bits (56), Expect = 0.29
 Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = -3

Query: 99  ILLDVFFGCLTDCYV-SVWWW 40
           I++ VFF C T  YV S+W+W
Sbjct: 264 IIIAVFFICWTPYYVMSLWYW 284


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
            receptor protein.
          Length = 1040

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 17/61 (27%), Positives = 27/61 (44%)
 Frame = +1

Query: 46   PNGYIAISQAPKENVKQNVIAAVASTDIKPVNNAPQAIIIEPSRELAEQTCTQFTKFKKY 225
            P  YI + + P+ NV+Q+++    ST       A  A  +     L   TC Q    KK+
Sbjct: 900  PKLYIILIR-PERNVRQSMMPTRYSTTKSSAVTATNASSMIAPVALTAATCDQNKAVKKH 958

Query: 226  L 228
            +
Sbjct: 959  I 959


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -1

Query: 791 LMARTQYFPFSXLTASDNVSGVVLPLRMLSLACTPSVCTCL 669
           L +RT     S   A++    V+     L L  TPS+CT L
Sbjct: 146 LASRTNPLDDSISQANEGFCAVISMHDGLVLYTTPSICTAL 186


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = +1

Query: 664 LRKHVQTDGVHAKDNIRSGNTTPETLSEAVXILKGKYCVRAIREHKMDRAI 816
           L+K  Q DG   K   R G+TT         +   +YC R I+    +R +
Sbjct: 437 LKKPRQGDGAAVKRKSREGSTTYLWEFLLKLLQDREYCPRYIKWTNRERGV 487


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -1

Query: 791 LMARTQYFPFSXLTASDNVSGVVLPLRMLSLACTPSVCTCL 669
           L +RT     S   A++    V+     L L  TPS+CT L
Sbjct: 141 LASRTNPLDDSISQANEGFCAVISMHDGLVLYTTPSICTAL 181


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = -3

Query: 483 SIGCYLRDLTMEAFNQFSVTRFQETISLV 397
           ++GC+    T+E  N  +V +  ET+ ++
Sbjct: 326 ALGCWNEHRTLERHNIRTVAQSDETLQMI 354


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = -3

Query: 483 SIGCYLRDLTMEAFNQFSVTRFQETISLV 397
           ++GC+    T+E  N  +V +  ET+ ++
Sbjct: 326 ALGCWNEHRTLERHNIRTVAQSDETLQMI 354


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = -3

Query: 483 SIGCYLRDLTMEAFNQFSVTRFQETISLV 397
           ++GC+    T+E  N  +V +  ET+ ++
Sbjct: 326 ALGCWNEHRTLERHNIRTVAQSDETLQMI 354


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 248,373
Number of Sequences: 438
Number of extensions: 5381
Number of successful extensions: 18
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27431202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)