Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_C11
(851 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 94 9e-20
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 91 6e-19
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 90 1e-18
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 83 2e-16
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 83 3e-16
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 82 4e-16
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 82 4e-16
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 81 1e-15
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 79 4e-15
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 78 6e-15
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 78 6e-15
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 77 1e-14
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 77 1e-14
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 77 2e-14
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 77 2e-14
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 77 2e-14
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 77 2e-14
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 75 6e-14
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 75 8e-14
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 73 3e-13
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 73 3e-13
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 73 3e-13
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 72 6e-13
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 72 6e-13
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 72 6e-13
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 72 6e-13
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 72 6e-13
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 71 7e-13
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 71 1e-12
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 71 1e-12
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 71 1e-12
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 71 1e-12
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 71 1e-12
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 70 2e-12
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 69 3e-12
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 69 4e-12
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 68 9e-12
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 66 3e-11
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 66 3e-11
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 65 6e-11
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 64 1e-10
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 64 1e-10
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 64 1e-10
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 64 1e-10
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 64 1e-10
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 61 1e-09
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 59 3e-09
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 57 1e-08
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 56 2e-08
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 56 3e-08
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 55 7e-08
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 55 7e-08
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 54 9e-08
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 54 1e-07
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 53 2e-07
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 50 3e-06
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 49 5e-06
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 48 8e-06
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 48 1e-05
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 47 1e-05
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 43 3e-04
At2g28600.1 68415.m03476 expressed protein 31 0.97
At5g64460.2 68418.m08098 expressed protein 29 5.2
At5g64460.1 68418.m08097 expressed protein 29 5.2
At2g43110.1 68415.m05352 expressed protein 28 6.9
At3g23560.1 68416.m02964 MATE efflux family protein similar to r... 28 9.1
At1g77600.1 68414.m09035 expressed protein weak similarity to Pd... 28 9.1
At1g30640.1 68414.m03747 protein kinase, putative contains prote... 28 9.1
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 94.3 bits (224), Expect = 9e-20
Identities = 50/148 (33%), Positives = 91/148 (61%)
Frame = +1
Query: 148 PQAIIIEPSRELAEQTCTQFTKFKKYLENPKIRELLVVGGINVKDQINQLNCGVDVVVGT 327
PQ +++ P+RELA Q +F + P + + + GG + Q+ +LN G+DV VGT
Sbjct: 191 PQCLVLAPTRELARQVEKEFRE-----SAPSLDTICLYGGTPIGQQMRELNYGIDVAVGT 245
Query: 328 PGRLEDLIQGGYLSLTHCRFFVLDEADGLLKAGYGELIERLHRQIPKITSDGRRLQMVVC 507
PGR+ DL++ G L+L+ +F VLDEAD +L+ G+ E +E + +++P + Q ++
Sbjct: 246 PGRIIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILQKLP------AKRQSMMF 299
Query: 508 SATLHAFQVKKMAEKLMHFPTWVDLKGE 591
SAT+ ++ ++ + +K ++ P +DL G+
Sbjct: 300 SATMPSW-IRSLTKKYLNNPLTIDLVGD 326
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 91.5 bits (217), Expect = 6e-19
Identities = 51/148 (34%), Positives = 90/148 (60%)
Frame = +1
Query: 148 PQAIIIEPSRELAEQTCTQFTKFKKYLENPKIRELLVVGGINVKDQINQLNCGVDVVVGT 327
P +++ P+RELA Q +F + P + + + GG + Q+ QL+ GVDV VGT
Sbjct: 179 PLCLVLAPTRELARQVEKEFRE-----SAPSLDTICLYGGTPIGQQMRQLDYGVDVAVGT 233
Query: 328 PGRLEDLIQGGYLSLTHCRFFVLDEADGLLKAGYGELIERLHRQIPKITSDGRRLQMVVC 507
PGR+ DL++ G L+L+ +F VLDEAD +L+ G+ E +E + ++P+ + Q ++
Sbjct: 234 PGRVIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKLPE------KRQSMMF 287
Query: 508 SATLHAFQVKKMAEKLMHFPTWVDLKGE 591
SAT+ ++ ++ + +K ++ P VDL G+
Sbjct: 288 SATMPSW-IRSLTKKYLNNPLTVDLVGD 314
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 90.2 bits (214), Expect = 1e-18
Identities = 55/148 (37%), Positives = 84/148 (56%)
Frame = +1
Query: 148 PQAIIIEPSRELAEQTCTQFTKFKKYLENPKIRELLVVGGINVKDQINQLNCGVDVVVGT 327
P+ +++ P+RELA+Q + + YL + V GG++ Q + L GVDVVVGT
Sbjct: 181 PKFLVLAPTRELAKQVEKEIKESAPYLST-----VCVYGGVSYTIQQSALTRGVDVVVGT 235
Query: 328 PGRLEDLIQGGYLSLTHCRFFVLDEADGLLKAGYGELIERLHRQIPKITSDGRRLQMVVC 507
PGR+ DLI+G L L + VLDEAD +L G+ E +E + +P + Q ++
Sbjct: 236 PGRIIDLIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILENLP------TKRQSMLF 289
Query: 508 SATLHAFQVKKMAEKLMHFPTWVDLKGE 591
SAT+ + VKK+A K + P +DL G+
Sbjct: 290 SATMPTW-VKKLARKYLDNPLNIDLVGD 316
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 83.0 bits (196), Expect = 2e-16
Identities = 47/114 (41%), Positives = 66/114 (57%)
Frame = +1
Query: 127 IKPVNNAPQAIIIEPSRELAEQTCTQFTKFKKYLENPKIRELLVVGGINVKDQINQLNCG 306
I P NN QA+I+ P+RELA QT + KYL KI ++ GG +++D I +L
Sbjct: 216 IDPENNVIQAVILVPTRELALQTSQVCKELSKYL---KIEVMVTTGGTSLRDDIMRLYQP 272
Query: 307 VDVVVGTPGRLEDLIQGGYLSLTHCRFFVLDEADGLLKAGYGELIERLHRQIPK 468
V ++VGTPGR+ DL + G L C V+DEAD LL + IE L + +P+
Sbjct: 273 VHLLVGTPGRILDLAKKGVCVLKDCAMLVMDEADKLLSVEFQPSIEELIQFLPE 326
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 82.6 bits (195), Expect = 3e-16
Identities = 45/122 (36%), Positives = 72/122 (59%), Gaps = 5/122 (4%)
Frame = +1
Query: 100 VIAAVASTDIKPV--NNAPQAIIIEPSRELAEQTCTQFTKFKKYLEN---PKIRELLVVG 264
+I A+ + P+ P A++I PSRELA+QT +F L P++R LL +G
Sbjct: 156 IILALQEEIMMPIAAGEGPIALVICPSRELAKQTYDVVEQFVASLVEDGYPRLRSLLCIG 215
Query: 265 GINVKDQINQLNCGVDVVVGTPGRLEDLIQGGYLSLTHCRFFVLDEADGLLKAGYGELIE 444
G++++ Q++ + GV +VV TPGRL+D++ +SL CR LDEAD L+ G+ + I
Sbjct: 216 GVDMRSQLDVVKKGVHIVVATPGRLKDILAKKKMSLDACRLLTLDEADRLVDLGFEDDIR 275
Query: 445 RL 450
+
Sbjct: 276 HV 277
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 82.2 bits (194), Expect = 4e-16
Identities = 46/114 (40%), Positives = 68/114 (59%)
Frame = +1
Query: 127 IKPVNNAPQAIIIEPSRELAEQTCTQFTKFKKYLENPKIRELLVVGGINVKDQINQLNCG 306
I P NN QA+I+ P+RELA QT + KYL I+ ++ GG +++D I +L+
Sbjct: 186 IDPNNNVIQAMILVPTRELALQTSQVCKELSKYLN---IQVMVTTGGTSLRDDIMRLHQP 242
Query: 307 VDVVVGTPGRLEDLIQGGYLSLTHCRFFVLDEADGLLKAGYGELIERLHRQIPK 468
V ++VGTPGR+ DL + G L C V+DEAD LL A + +E L + +P+
Sbjct: 243 VHLLVGTPGRILDLTKKGVCVLKDCAMLVMDEADKLLSAEFQPSLEELIQFLPQ 296
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 82.2 bits (194), Expect = 4e-16
Identities = 46/114 (40%), Positives = 68/114 (59%)
Frame = +1
Query: 127 IKPVNNAPQAIIIEPSRELAEQTCTQFTKFKKYLENPKIRELLVVGGINVKDQINQLNCG 306
I P NN QA+I+ P+RELA QT + KYL I+ ++ GG +++D I +L+
Sbjct: 186 IDPNNNVIQAMILVPTRELALQTSQVCKELSKYLN---IQVMVTTGGTSLRDDIMRLHQP 242
Query: 307 VDVVVGTPGRLEDLIQGGYLSLTHCRFFVLDEADGLLKAGYGELIERLHRQIPK 468
V ++VGTPGR+ DL + G L C V+DEAD LL A + +E L + +P+
Sbjct: 243 VHLLVGTPGRILDLTKKGVCVLKDCAMLVMDEADKLLSAEFQPSLEELIQFLPQ 296
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 80.6 bits (190), Expect = 1e-15
Identities = 48/137 (35%), Positives = 79/137 (57%)
Frame = +1
Query: 148 PQAIIIEPSRELAEQTCTQFTKFKKYLENPKIRELLVVGGINVKDQINQLNCGVDVVVGT 327
P A+I+ P+RELA C + +K+ ++ ++ GG V QI +L GVD++V T
Sbjct: 225 PLAVILSPTRELA---CQIHDEARKFSYQTGVKVVVAYGGTPVNQQIRELERGVDILVAT 281
Query: 328 PGRLEDLIQGGYLSLTHCRFFVLDEADGLLKAGYGELIERLHRQIPKITSDGRRLQMVVC 507
PGRL DL++ G +SL RF LDEAD +L G+ I ++ +Q+ + G R Q ++
Sbjct: 282 PGRLNDLLERGRVSLQMVRFLALDEADRMLDMGFEPQIRKIVQQM-DMPPPGVR-QTMLF 339
Query: 508 SATLHAFQVKKMAEKLM 558
SAT +++++A +
Sbjct: 340 SATFPR-EIQRLASDFL 355
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 79.0 bits (186), Expect = 4e-15
Identities = 42/104 (40%), Positives = 62/104 (59%), Gaps = 3/104 (2%)
Frame = +1
Query: 148 PQAIIIEPSRELAEQTCTQFTKFKKYLEN---PKIRELLVVGGINVKDQINQLNCGVDVV 318
P +I+ PSRELA QT +F L P +R LL +GGI+++ Q+ + GV +V
Sbjct: 223 PIGLIVCPSRELARQTYEVVEQFVAPLVEAGYPPLRSLLCIGGIDMRSQLEVVKRGVHIV 282
Query: 319 VGTPGRLEDLIQGGYLSLTHCRFFVLDEADGLLKAGYGELIERL 450
V TPGRL+D++ +SL CR+ LDEAD L+ G+ + I +
Sbjct: 283 VATPGRLKDMLAKKKMSLDACRYLTLDEADRLVDLGFEDDIREV 326
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 78.2 bits (184), Expect = 6e-15
Identities = 54/151 (35%), Positives = 81/151 (53%)
Frame = +1
Query: 139 NNAPQAIIIEPSRELAEQTCTQFTKFKKYLENPKIRELLVVGGINVKDQINQLNCGVDVV 318
NN QA+II P+RELA QT + K+L KI+ ++ GG ++KD I +L V ++
Sbjct: 197 NNVIQAVIIVPTRELALQTSQVCKELGKHL---KIQVMVTTGGTSLKDDIMRLYQPVHLL 253
Query: 319 VGTPGRLEDLIQGGYLSLTHCRFFVLDEADGLLKAGYGELIERLHRQIPKITSDGRRLQM 498
VGTPGR+ DL + G L C V+DEAD LL + +E L +P+ Q+
Sbjct: 254 VGTPGRILDLTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFLPE------SRQI 307
Query: 499 VVCSATLHAFQVKKMAEKLMHFPTWVDLKGE 591
++ SAT VK ++ + P ++L E
Sbjct: 308 LMFSATF-PVTVKDFKDRFLTNPYVINLMDE 337
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 78.2 bits (184), Expect = 6e-15
Identities = 54/151 (35%), Positives = 81/151 (53%)
Frame = +1
Query: 139 NNAPQAIIIEPSRELAEQTCTQFTKFKKYLENPKIRELLVVGGINVKDQINQLNCGVDVV 318
NN QA+II P+RELA QT + K+L KI+ ++ GG ++KD I +L V ++
Sbjct: 197 NNVIQAVIIVPTRELALQTSQVCKELGKHL---KIQVMVTTGGTSLKDDIMRLYQPVHLL 253
Query: 319 VGTPGRLEDLIQGGYLSLTHCRFFVLDEADGLLKAGYGELIERLHRQIPKITSDGRRLQM 498
VGTPGR+ DL + G L C V+DEAD LL + +E L +P+ Q+
Sbjct: 254 VGTPGRILDLTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFLPE------SRQI 307
Query: 499 VVCSATLHAFQVKKMAEKLMHFPTWVDLKGE 591
++ SAT VK ++ + P ++L E
Sbjct: 308 LMFSATF-PVTVKDFKDRFLTNPYVINLMDE 337
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 77.4 bits (182), Expect = 1e-14
Identities = 50/151 (33%), Positives = 85/151 (56%), Gaps = 1/151 (0%)
Frame = +1
Query: 145 APQAIIIEPSRELAEQTCTQFTKFKKYLENPKIRELLVVGGINVKDQINQLNCGVDVVVG 324
+P +++ P+RELA+Q F + L + + GG + Q +L GVD+VVG
Sbjct: 174 SPSVLVLLPTRELAKQVAADFDAYGGSLG---LSSCCLYGGDSYPVQEGKLKRGVDIVVG 230
Query: 325 TPGRLEDLIQGGYLSLTHCRFFVLDEADGLLKAGYGELIERLHRQIPKITSDGRRLQMVV 504
TPGR++D I+ L ++ +F VLDEAD +L+ G+ E +E + ++ D ++Q ++
Sbjct: 231 TPGRIKDHIERQNLDFSYLQFRVLDEADEMLRMGFVEDVELILGKV----EDSTKVQTLL 286
Query: 505 CSATLHAFQVKKMAEK-LMHFPTWVDLKGED 594
SATL ++ VK ++ + L +DL G D
Sbjct: 287 FSATLPSW-VKNISNRFLKRDQKTIDLVGND 316
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 77.0 bits (181), Expect = 1e-14
Identities = 51/143 (35%), Positives = 79/143 (55%)
Frame = +1
Query: 130 KPVNNAPQAIIIEPSRELAEQTCTQFTKFKKYLENPKIRELLVVGGINVKDQINQLNCGV 309
K VN P +++ P+RELA Q ++ E ++ + V GG + QI+ + GV
Sbjct: 188 KKVN--PTCLVLSPTRELAVQISDVL---REAGEPCGLKSICVYGGSSKGPQISAIRSGV 242
Query: 310 DVVVGTPGRLEDLIQGGYLSLTHCRFFVLDEADGLLKAGYGELIERLHRQIPKITSDGRR 489
D+V+GTPGRL DLI+ L L+ F VLDEAD +L G+ E + + +++ +
Sbjct: 243 DIVIGTPGRLRDLIESNVLRLSDVSFVVLDEADRMLDMGFEEPVRFI------LSNTNKV 296
Query: 490 LQMVVCSATLHAFQVKKMAEKLM 558
QMV+ SAT V K+A++ M
Sbjct: 297 RQMVMFSAT-WPLDVHKLAQEFM 318
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 76.6 bits (180), Expect = 2e-14
Identities = 46/137 (33%), Positives = 77/137 (56%)
Frame = +1
Query: 148 PQAIIIEPSRELAEQTCTQFTKFKKYLENPKIRELLVVGGINVKDQINQLNCGVDVVVGT 327
P A+I+ P+RELA C + KK+ ++ ++ GG + Q+ +L G D++V T
Sbjct: 230 PFAVILSPTRELA---CQIHDEAKKFSYQTGVKVVVAYGGTPIHQQLRELERGCDILVAT 286
Query: 328 PGRLEDLIQGGYLSLTHCRFFVLDEADGLLKAGYGELIERLHRQIPKITSDGRRLQMVVC 507
PGRL DL++ +S+ RF LDEAD +L G+ I ++ Q+ + G R Q ++
Sbjct: 287 PGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQM-DMPPRGVR-QTMLF 344
Query: 508 SATLHAFQVKKMAEKLM 558
SAT + Q++++A M
Sbjct: 345 SATFPS-QIQRLAADFM 360
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 76.6 bits (180), Expect = 2e-14
Identities = 46/137 (33%), Positives = 77/137 (56%)
Frame = +1
Query: 148 PQAIIIEPSRELAEQTCTQFTKFKKYLENPKIRELLVVGGINVKDQINQLNCGVDVVVGT 327
P A+I+ P+RELA C + KK+ ++ ++ GG + Q+ +L G D++V T
Sbjct: 230 PFAVILSPTRELA---CQIHDEAKKFSYQTGVKVVVAYGGTPIHQQLRELERGCDILVAT 286
Query: 328 PGRLEDLIQGGYLSLTHCRFFVLDEADGLLKAGYGELIERLHRQIPKITSDGRRLQMVVC 507
PGRL DL++ +S+ RF LDEAD +L G+ I ++ Q+ + G R Q ++
Sbjct: 287 PGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQM-DMPPRGVR-QTMLF 344
Query: 508 SATLHAFQVKKMAEKLM 558
SAT + Q++++A M
Sbjct: 345 SATFPS-QIQRLAADFM 360
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 76.6 bits (180), Expect = 2e-14
Identities = 40/105 (38%), Positives = 61/105 (58%)
Frame = +1
Query: 148 PQAIIIEPSRELAEQTCTQFTKFKKYLENPKIRELLVVGGINVKDQINQLNCGVDVVVGT 327
P A+I+ P+RELA Q + KF Y K+ ++ GG + Q+ +L GVD++V T
Sbjct: 238 PLAVILSPTRELASQIHDEAKKFS-YQTGVKV--VVAYGGTPINQQLRELERGVDILVAT 294
Query: 328 PGRLEDLIQGGYLSLTHCRFFVLDEADGLLKAGYGELIERLHRQI 462
PGRL DL++ +S+ RF LDEAD +L G+ I ++ Q+
Sbjct: 295 PGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQM 339
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 76.6 bits (180), Expect = 2e-14
Identities = 56/189 (29%), Positives = 91/189 (48%)
Frame = +1
Query: 40 PPPNGYIAISQAPKENVKQNVIAAVASTDIKPVNNAPQAIIIEPSRELAEQTCTQFTKFK 219
P G I+QA K ++IA + + Q +++ PSRELA QT
Sbjct: 55 PILKGRDVIAQAQSGTGKTSMIAISVCQIVNISSRKVQVLVLSPSRELASQTEKTIQAIG 114
Query: 220 KYLENPKIRELLVVGGINVKDQINQLNCGVDVVVGTPGRLEDLIQGGYLSLTHCRFFVLD 399
+ I+ +GG ++ + I +L GV V GTPGR+ D+I+ G L + VLD
Sbjct: 115 AHTN---IQAHACIGGKSIGEDIKKLERGVHAVSGTPGRVYDMIKRGSLQTKAVKLLVLD 171
Query: 400 EADGLLKAGYGELIERLHRQIPKITSDGRRLQMVVCSATLHAFQVKKMAEKLMHFPTWVD 579
E+D +L G + I ++R +P +Q+ + SATL ++ +M EK M P +
Sbjct: 172 ESDEMLSKGLKDQIYDVYRALP------HDIQVCLISATLPQ-EILEMTEKFMTDPVRIL 224
Query: 580 LKGEDAVPE 606
+K ++ E
Sbjct: 225 VKPDELTLE 233
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 74.9 bits (176), Expect = 6e-14
Identities = 48/149 (32%), Positives = 80/149 (53%)
Frame = +1
Query: 148 PQAIIIEPSRELAEQTCTQFTKFKKYLENPKIRELLVVGGINVKDQINQLNCGVDVVVGT 327
P +++ P+RELA Q + KF K + KI + GG Q+ ++ GVD+VV T
Sbjct: 302 PTILVLSPTRELATQIQVEALKFGK---SSKISCACLYGGAPKGPQLKEIERGVDIVVAT 358
Query: 328 PGRLEDLIQGGYLSLTHCRFFVLDEADGLLKAGYGELIERLHRQIPKITSDGRRLQMVVC 507
PGRL D+++ +SL + VLDEAD +L G+ I ++ ++P + Q ++
Sbjct: 359 PGRLNDILEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVP------TKRQTLMY 412
Query: 508 SATLHAFQVKKMAEKLMHFPTWVDLKGED 594
+AT +V+K+A L+ P V++ D
Sbjct: 413 TATWPK-EVRKIAADLLVNPAQVNIGNVD 440
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 74.5 bits (175), Expect = 8e-14
Identities = 57/189 (30%), Positives = 92/189 (48%)
Frame = +1
Query: 40 PPPNGYIAISQAPKENVKQNVIAAVASTDIKPVNNAPQAIIIEPSRELAEQTCTQFTKFK 219
P G I+QA K ++IA + + QA+I+ P+RELA QT
Sbjct: 68 PILQGRDVIAQAQSGTGKTSMIALSVCQVVDTSSREVQALILSPTRELATQTEKTIQAIG 127
Query: 220 KYLENPKIRELLVVGGINVKDQINQLNCGVDVVVGTPGRLEDLIQGGYLSLTHCRFFVLD 399
+ I+ +GG +V + I +L GV VV GTPGR+ D+I+ L + +LD
Sbjct: 128 LHAN---IQAHACIGGNSVGEDIRKLEHGVHVVSGTPGRVCDMIKRRSLRTRAIKLLILD 184
Query: 400 EADGLLKAGYGELIERLHRQIPKITSDGRRLQMVVCSATLHAFQVKKMAEKLMHFPTWVD 579
E+D +L G+ + I ++R +P LQ+ + SATL ++ +M K M P +
Sbjct: 185 ESDEMLSRGFKDQIYDVYRYLPP------DLQVCLVSATL-PHEILEMTSKFMTEPVKIL 237
Query: 580 LKGEDAVPE 606
+K ++ E
Sbjct: 238 VKRDELTLE 246
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 72.5 bits (170), Expect = 3e-13
Identities = 35/94 (37%), Positives = 57/94 (60%)
Frame = +1
Query: 148 PQAIIIEPSRELAEQTCTQFTKFKKYLENPKIRELLVVGGINVKDQINQLNCGVDVVVGT 327
P A+++ P+RELA+Q + KF YL R +VGG ++++Q ++ G ++V+ T
Sbjct: 390 PYAVVMAPTRELAQQIEEETVKFAHYLG---FRVTSIVGGQSIEEQGLKITQGCEIVIAT 446
Query: 328 PGRLEDLIQGGYLSLTHCRFFVLDEADGLLKAGY 429
PGRL D ++ Y L C + VLDEAD ++ G+
Sbjct: 447 PGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGF 480
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 72.5 bits (170), Expect = 3e-13
Identities = 59/183 (32%), Positives = 101/183 (55%), Gaps = 4/183 (2%)
Frame = +1
Query: 151 QAIIIEPSRELAEQTCTQFTK-FKKYLENPKIRELLVVGGINVKDQINQLNCGVDVVVGT 327
+A+I+ P+R+LAEQT +FTK K+ + +R L+VGG +++DQ +L G DV++ T
Sbjct: 100 RALILSPTRDLAEQTL-KFTKELGKFTD---LRVSLLVGGDSMEDQFEELTKGPDVIIAT 155
Query: 328 PGRLEDLI-QGGYLSLTHCRFFVLDEADGLLKAGYGELIERLHRQIPKITSDGRRLQMVV 504
PGRL L+ + ++L + V DEAD L G+ E + ++ Q+ S+ R Q ++
Sbjct: 156 PGRLMHLLSEVDDMTLRTVEYVVFDEADSLFGMGFAEQLHQILTQL----SENR--QTLL 209
Query: 505 CSATLHAFQVKKMAEKLMHFPTWVDLKGEDAV-PETXXXXXXXXDPQKDSSWQTL-RKHV 678
SATL + + + A+ + P V L E+ + P+ +K S+ L R+H+
Sbjct: 210 FSATLPS-ALAEFAKAGLREPQLVRLDVENKISPDLKLSFLTVRPEEKYSALLYLVREHI 268
Query: 679 QTD 687
+D
Sbjct: 269 SSD 271
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 72.5 bits (170), Expect = 3e-13
Identities = 49/152 (32%), Positives = 81/152 (53%)
Frame = +1
Query: 151 QAIIIEPSRELAEQTCTQFTKFKKYLENPKIRELLVVGGINVKDQINQLNCGVDVVVGTP 330
QA+++ P+RELA+Q YL ++ VGG +V++ L GV VVVGTP
Sbjct: 111 QALVLAPTRELAQQIEKVMRALGDYLG---VKAQACVGGTSVREDQRVLQSGVHVVVGTP 167
Query: 331 GRLEDLIQGGYLSLTHCRFFVLDEADGLLKAGYGELIERLHRQIPKITSDGRRLQMVVCS 510
GR+ DL++ L + FVLDEAD +L G+ + I + + +P ++Q+ V S
Sbjct: 168 GRVFDLLRRQSLRADAIKMFVLDEADEMLSRGFKDQIYDIFQLLPS------KVQVGVFS 221
Query: 511 ATLHAFQVKKMAEKLMHFPTWVDLKGEDAVPE 606
AT+ + ++ K M+ P + +K ++ E
Sbjct: 222 ATMPP-EALEITRKFMNKPVRILVKRDELTLE 252
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 71.7 bits (168), Expect = 6e-13
Identities = 56/173 (32%), Positives = 91/173 (52%), Gaps = 1/173 (0%)
Frame = +1
Query: 52 GYIAISQAPKENVKQNVIAAVASTDIKPVNNAPQAIIIEPSRELAEQTCTQFTKFKKYLE 231
G I QA K V I+P A+++ +RELA Q C +F +F YL
Sbjct: 83 GMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLP 142
Query: 232 NPKIRELLVVGGINVKDQINQL-NCGVDVVVGTPGRLEDLIQGGYLSLTHCRFFVLDEAD 408
+ K+ + GG+N+K + L N +VVGTPGR+ L + LSL + R F+LDE D
Sbjct: 143 DTKVS--VFYGGVNIKIHKDLLKNECPHIVVGTPGRVLALAREKDLSLKNVRHFILDECD 200
Query: 409 GLLKAGYGELIERLHRQIPKITSDGRRLQMVVCSATLHAFQVKKMAEKLMHFP 567
+L++ + R ++I K+T + Q+++ SATL + +++ + +K M P
Sbjct: 201 KMLES---LDMRRDVQEIFKMTPHDK--QVMMFSATL-SKEIRPVCKKFMQDP 247
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 71.7 bits (168), Expect = 6e-13
Identities = 56/173 (32%), Positives = 91/173 (52%), Gaps = 1/173 (0%)
Frame = +1
Query: 52 GYIAISQAPKENVKQNVIAAVASTDIKPVNNAPQAIIIEPSRELAEQTCTQFTKFKKYLE 231
G I QA K V I+P A+++ +RELA Q C +F +F YL
Sbjct: 83 GMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLP 142
Query: 232 NPKIRELLVVGGINVKDQINQL-NCGVDVVVGTPGRLEDLIQGGYLSLTHCRFFVLDEAD 408
+ K+ + GG+N+K + L N +VVGTPGR+ L + LSL + R F+LDE D
Sbjct: 143 DTKVS--VFYGGVNIKIHKDLLKNECPHIVVGTPGRVLALAREKDLSLKNVRHFILDECD 200
Query: 409 GLLKAGYGELIERLHRQIPKITSDGRRLQMVVCSATLHAFQVKKMAEKLMHFP 567
+L++ + R ++I K+T + Q+++ SATL + +++ + +K M P
Sbjct: 201 KMLES---LDMRRDVQEIFKMTPHDK--QVMMFSATL-SKEIRPVCKKFMQDP 247
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 71.7 bits (168), Expect = 6e-13
Identities = 41/137 (29%), Positives = 76/137 (55%), Gaps = 2/137 (1%)
Frame = +1
Query: 148 PQAIIIEPSRELAEQTCTQFTKFKKYLENPKIRELLVVGGINVKDQINQLNCGVDVVVGT 327
P+ +++ P+REL+EQ + K + + R +LV GG ++ Q + LN +D+VVGT
Sbjct: 190 PRTVVLCPTRELSEQV---YRVAKSISHHARFRSILVSGGSRIRPQEDSLNNAIDMVVGT 246
Query: 328 PGRLEDLIQGGYLSLTHCRFFVLDEADGLLKAGYGELIERLHRQIPK--ITSDGRRLQMV 501
PGR+ I+ G + + VLDEAD + G+G I + + + + ++ + Q V
Sbjct: 247 PGRILQHIEEGNMVYGDIAYLVLDEADTMFDRGFGPEIRKFLAPLNQRALKTNDQGFQTV 306
Query: 502 VCSATLHAFQVKKMAEK 552
+ +AT+ V+K+ ++
Sbjct: 307 LVTATM-TMAVQKLVDE 322
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 71.7 bits (168), Expect = 6e-13
Identities = 48/182 (26%), Positives = 90/182 (49%), Gaps = 3/182 (1%)
Frame = +1
Query: 58 IAISQAPKENVKQNVIAAVASTDIKPV---NNAPQAIIIEPSRELAEQTCTQFTKFKKYL 228
I I++ ++ A+ + +P+ + P +++ P+RELA Q + +KF
Sbjct: 140 IGIAETGSGKTLSYLLPAIVHVNAQPMLAHGDGPIVLVLAPTRELAVQIQQEASKFGS-- 197
Query: 229 ENPKIRELLVVGGINVKDQINQLNCGVDVVVGTPGRLEDLIQGGYLSLTHCRFFVLDEAD 408
+ KI+ + GG+ Q+ L GV++V+ TPGRL D+++ +L + VLDEAD
Sbjct: 198 -SSKIKTTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMMESNNTNLRRVTYLVLDEAD 256
Query: 409 GLLKAGYGELIERLHRQIPKITSDGRRLQMVVCSATLHAFQVKKMAEKLMHFPTWVDLKG 588
+L G+ QI KI S R + + + +V+++++K ++ P V +
Sbjct: 257 RMLDMGFDP-------QIRKIVSHIRPDRQTLYWSATWPKEVEQLSKKFLYNPYKVIIGS 309
Query: 589 ED 594
D
Sbjct: 310 SD 311
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains Pfam
profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 71.7 bits (168), Expect = 6e-13
Identities = 51/156 (32%), Positives = 80/156 (51%), Gaps = 3/156 (1%)
Frame = +1
Query: 142 NAPQAIIIEPSRELAEQTCTQFTKFKKYLENPKIRELLVVGGINVKDQINQLNCGVDVVV 321
+ P +++ P+REL +Q + KF K L IR + V GG V QI++L G ++VV
Sbjct: 601 DGPIGLVMAPTRELVQQIHSDIRKFSKPLG---IRCVPVYGGSGVAQQISELKRGTEIVV 657
Query: 322 GTPGRLEDLI---QGGYLSLTHCRFFVLDEADGLLKAGYGELIERLHRQIPKITSDGRRL 492
TPGR+ D++ G +L F V+DEAD + G+ I R+ + I
Sbjct: 658 CTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIIQNIRP------ER 711
Query: 493 QMVVCSATLHAFQVKKMAEKLMHFPTWVDLKGEDAV 600
Q V+ SAT QV+ +A K+++ P + + G V
Sbjct: 712 QTVLFSATFPR-QVETLARKVLNKPVEIQVGGRSVV 746
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 71.3 bits (167), Expect = 7e-13
Identities = 48/152 (31%), Positives = 81/152 (53%)
Frame = +1
Query: 151 QAIIIEPSRELAEQTCTQFTKFKKYLENPKIRELLVVGGINVKDQINQLNCGVDVVVGTP 330
QA+++ P+RELA+Q YL ++ VGG +V++ L GV VVVGTP
Sbjct: 109 QALVLAPTRELAQQIEKVMRALGDYLG---VKVHACVGGTSVREDQRILQAGVHVVVGTP 165
Query: 331 GRLEDLIQGGYLSLTHCRFFVLDEADGLLKAGYGELIERLHRQIPKITSDGRRLQMVVCS 510
GR+ D+++ L + + FVLDEAD +L G+ + I + + +P ++Q+ V S
Sbjct: 166 GRVFDMLKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPP------KIQVGVFS 219
Query: 511 ATLHAFQVKKMAEKLMHFPTWVDLKGEDAVPE 606
AT+ + ++ K M P + +K ++ E
Sbjct: 220 ATMPP-EALEITRKFMSKPVRILVKRDELTLE 250
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 70.9 bits (166), Expect = 1e-12
Identities = 55/169 (32%), Positives = 90/169 (53%), Gaps = 1/169 (0%)
Frame = +1
Query: 64 ISQAPKENVKQNVIAAVASTDIKPVNNAPQAIIIEPSRELAEQTCTQFTKFKKYLENPKI 243
I QA K V I+P A+++ +RELA Q C +F +F YL + K+
Sbjct: 4 ICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKV 63
Query: 244 RELLVVGGINVKDQINQL-NCGVDVVVGTPGRLEDLIQGGYLSLTHCRFFVLDEADGLLK 420
+ GG+N+K + L N +VVGTPGR+ L + LSL + R F+LDE D +L+
Sbjct: 64 S--VFYGGVNIKIHKDLLKNECPHIVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLE 121
Query: 421 AGYGELIERLHRQIPKITSDGRRLQMVVCSATLHAFQVKKMAEKLMHFP 567
+ + R ++I K+T + Q+++ SATL + +++ + +K M P
Sbjct: 122 S---LDMRRDVQEIFKMTPHDK--QVMMFSATL-SKEIRPVCKKFMQDP 164
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 70.9 bits (166), Expect = 1e-12
Identities = 47/149 (31%), Positives = 78/149 (52%)
Frame = +1
Query: 148 PQAIIIEPSRELAEQTCTQFTKFKKYLENPKIRELLVVGGINVKDQINQLNCGVDVVVGT 327
P +++ P+RELA Q + KF + + +I + GG Q+ L G D+VV T
Sbjct: 231 PTILVLSPTRELATQIQEEAVKFGR---SSRISCTCLYGGAPKGPQLRDLERGADIVVAT 287
Query: 328 PGRLEDLIQGGYLSLTHCRFFVLDEADGLLKAGYGELIERLHRQIPKITSDGRRLQMVVC 507
PGRL D+++ +SL + VLDEAD +L G+ I ++ ++IP + Q ++
Sbjct: 288 PGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIP------TKRQTLMY 341
Query: 508 SATLHAFQVKKMAEKLMHFPTWVDLKGED 594
+AT V+K+A L+ P V++ D
Sbjct: 342 TATWPK-GVRKIAADLLVNPAQVNIGNVD 369
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 70.9 bits (166), Expect = 1e-12
Identities = 47/149 (31%), Positives = 78/149 (52%)
Frame = +1
Query: 148 PQAIIIEPSRELAEQTCTQFTKFKKYLENPKIRELLVVGGINVKDQINQLNCGVDVVVGT 327
P +++ P+RELA Q + KF + + +I + GG Q+ L G D+VV T
Sbjct: 231 PTILVLSPTRELATQIQEEAVKFGR---SSRISCTCLYGGAPKGPQLRDLERGADIVVAT 287
Query: 328 PGRLEDLIQGGYLSLTHCRFFVLDEADGLLKAGYGELIERLHRQIPKITSDGRRLQMVVC 507
PGRL D+++ +SL + VLDEAD +L G+ I ++ ++IP + Q ++
Sbjct: 288 PGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIP------TKRQTLMY 341
Query: 508 SATLHAFQVKKMAEKLMHFPTWVDLKGED 594
+AT V+K+A L+ P V++ D
Sbjct: 342 TATWPK-GVRKIAADLLVNPAQVNIGNVD 369
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 70.9 bits (166), Expect = 1e-12
Identities = 47/149 (31%), Positives = 78/149 (52%)
Frame = +1
Query: 148 PQAIIIEPSRELAEQTCTQFTKFKKYLENPKIRELLVVGGINVKDQINQLNCGVDVVVGT 327
P +++ P+RELA Q + KF + + +I + GG Q+ L G D+VV T
Sbjct: 231 PTILVLSPTRELATQIQEEAVKFGR---SSRISCTCLYGGAPKGPQLRDLERGADIVVAT 287
Query: 328 PGRLEDLIQGGYLSLTHCRFFVLDEADGLLKAGYGELIERLHRQIPKITSDGRRLQMVVC 507
PGRL D+++ +SL + VLDEAD +L G+ I ++ ++IP + Q ++
Sbjct: 288 PGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIP------TKRQTLMY 341
Query: 508 SATLHAFQVKKMAEKLMHFPTWVDLKGED 594
+AT V+K+A L+ P V++ D
Sbjct: 342 TATWPK-GVRKIAADLLVNPAQVNIGNVD 369
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 70.5 bits (165), Expect = 1e-12
Identities = 46/147 (31%), Positives = 76/147 (51%)
Frame = +1
Query: 142 NAPQAIIIEPSRELAEQTCTQFTKFKKYLENPKIRELLVVGGINVKDQINQLNCGVDVVV 321
N P +I+ P+RELA Q + +F + + +I + GG Q+ +L G D+VV
Sbjct: 506 NGPTVLILAPTRELATQIQDEALRFGR---SSRISCTCLYGGAPKGPQLKELERGADIVV 562
Query: 322 GTPGRLEDLIQGGYLSLTHCRFFVLDEADGLLKAGYGELIERLHRQIPKITSDGRRLQMV 501
TPGRL D+++ + VLDEAD +L G+ I ++ +IP R Q +
Sbjct: 563 ATPGRLNDILEMKMIDFQQVSLLVLDEADRMLDMGFEPQIRKIVNEIPP------RRQTL 616
Query: 502 VCSATLHAFQVKKMAEKLMHFPTWVDL 582
+ +AT +V+K+A L+ P V++
Sbjct: 617 MYTATWPK-EVRKIASDLLVNPVQVNI 642
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 69.7 bits (163), Expect = 2e-12
Identities = 44/143 (30%), Positives = 79/143 (55%)
Frame = +1
Query: 139 NNAPQAIIIEPSRELAEQTCTQFTKFKKYLENPKIRELLVVGGINVKDQINQLNCGVDVV 318
+ P +I P+RELA Q F + KK+ + +R V GG++ +Q +L G ++V
Sbjct: 299 DEGPIGVICAPTRELAHQI---FLEAKKFSKAYGLRVSAVYGGMSKHEQFKELKAGCEIV 355
Query: 319 VGTPGRLEDLIQGGYLSLTHCRFFVLDEADGLLKAGYGELIERLHRQIPKITSDGRRLQM 498
V TPGRL D+++ L++ + VLDEAD + G+ + + + +I D Q
Sbjct: 356 VATPGRLIDMLKMKALTMMRASYLVLDEADRMFDLGFEPQVRSI---VGQIRPD---RQT 409
Query: 499 VVCSATLHAFQVKKMAEKLMHFP 567
++ SAT+ ++V+K+A +++ P
Sbjct: 410 LLFSATM-PWKVEKLAREILSDP 431
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 69.3 bits (162), Expect = 3e-12
Identities = 54/151 (35%), Positives = 74/151 (49%), Gaps = 9/151 (5%)
Frame = +1
Query: 151 QAIIIEPSRELAEQTCTQFTKFKKYLENPKIRELLVVGGINVKDQINQLNCGVD-VVVGT 327
QA+I+ PSREL Q + K + +++L VGG N Q L +VVGT
Sbjct: 193 QAMIVAPSRELGMQIVREVEKLLGPVHRRMVQQL--VGGANRMRQEEALKKNKPAIVVGT 250
Query: 328 PGRLEDLIQGGYLSLTHCRFFVLDEADGLLKAGYGELIERLHRQI-------PKITSDGR 486
PGR+ ++ +GG L CRF VLDE D LL + E I R+ + PK D R
Sbjct: 251 PGRIAEISKGGKLHTHGCRFLVLDEVDELLSFNFREDIHRILEHVGKRSGAGPKGEVDER 310
Query: 487 -RLQMVVCSATLHAFQVKKMAEKLMHFPTWV 576
Q ++ SAT+ F V + A+ H P V
Sbjct: 311 ANRQTILVSATV-PFSVIRAAKSWSHEPVLV 340
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 68.9 bits (161), Expect = 4e-12
Identities = 50/156 (32%), Positives = 80/156 (51%), Gaps = 3/156 (1%)
Frame = +1
Query: 142 NAPQAIIIEPSRELAEQTCTQFTKFKKYLENPKIRELLVVGGINVKDQINQLNCGVDVVV 321
+ P +++ P+REL +Q + KF K L I + V GG V QI++L G ++VV
Sbjct: 468 DGPIGLVMAPTRELVQQIYSDIRKFSKALG---IICVPVYGGSGVAQQISELKRGTEIVV 524
Query: 322 GTPGRLEDLI---QGGYLSLTHCRFFVLDEADGLLKAGYGELIERLHRQIPKITSDGRRL 492
TPGR+ D++ G +L + V+DEAD + G+ I R+ + I D
Sbjct: 525 CTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRI---VQNIRPD---R 578
Query: 493 QMVVCSATLHAFQVKKMAEKLMHFPTWVDLKGEDAV 600
Q V+ SAT QV+ +A K+++ P + + G V
Sbjct: 579 QTVLFSATFPR-QVETLARKVLNKPVEIQVGGRSVV 613
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 67.7 bits (158), Expect = 9e-12
Identities = 48/152 (31%), Positives = 80/152 (52%)
Frame = +1
Query: 151 QAIIIEPSRELAEQTCTQFTKFKKYLENPKIRELLVVGGINVKDQINQLNCGVDVVVGTP 330
QA+++ P+RELA+Q Y + K+ VGG +V++ L GV VVVGTP
Sbjct: 109 QALVLAPTRELAQQIEKVMRALGDY-QGVKVHAC--VGGTSVREDQRILQAGVHVVVGTP 165
Query: 331 GRLEDLIQGGYLSLTHCRFFVLDEADGLLKAGYGELIERLHRQIPKITSDGRRLQMVVCS 510
GR+ D+++ L + FVLDEAD +L G+ + I + + +P ++Q+ V S
Sbjct: 166 GRVFDMLRRQSLRPDCIKMFVLDEADEMLSRGFKDQIYDIFQLLPP------KIQVGVFS 219
Query: 511 ATLHAFQVKKMAEKLMHFPTWVDLKGEDAVPE 606
AT+ + ++ K M P + +K ++ E
Sbjct: 220 ATMPP-EALEITRKFMSKPVRILVKRDELTLE 250
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 66.1 bits (154), Expect = 3e-11
Identities = 37/108 (34%), Positives = 58/108 (53%)
Frame = +1
Query: 139 NNAPQAIIIEPSRELAEQTCTQFTKFKKYLENPKIRELLVVGGINVKDQINQLNCGVDVV 318
++ P +I+ P+RELA Q + KF +R + GG QI L GV++V
Sbjct: 236 DDGPIVLILAPTRELAVQIQEESRKFGL---RSGVRSTCIYGGAPKGPQIRDLRRGVEIV 292
Query: 319 VGTPGRLEDLIQGGYLSLTHCRFFVLDEADGLLKAGYGELIERLHRQI 462
+ TPGRL D+++ + +L + VLDEAD +L G+ I ++ QI
Sbjct: 293 IATPGRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQI 340
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 66.1 bits (154), Expect = 3e-11
Identities = 37/108 (34%), Positives = 58/108 (53%)
Frame = +1
Query: 139 NNAPQAIIIEPSRELAEQTCTQFTKFKKYLENPKIRELLVVGGINVKDQINQLNCGVDVV 318
++ P +I+ P+RELA Q + KF +R + GG QI L GV++V
Sbjct: 236 DDGPIVLILAPTRELAVQIQEESRKFGL---RSGVRSTCIYGGAPKGPQIRDLRRGVEIV 292
Query: 319 VGTPGRLEDLIQGGYLSLTHCRFFVLDEADGLLKAGYGELIERLHRQI 462
+ TPGRL D+++ + +L + VLDEAD +L G+ I ++ QI
Sbjct: 293 IATPGRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQI 340
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 64.9 bits (151), Expect = 6e-11
Identities = 45/130 (34%), Positives = 69/130 (53%), Gaps = 6/130 (4%)
Frame = +1
Query: 97 NVIAAVASTDIKPVNNAPQ--AIIIEPSRELAEQTCTQFTKFKKYLENPKIRELLVVGGI 270
++ V S P N P A++I P+RELA Q T+ KY +P I +V+GG
Sbjct: 112 SIEVVVKSPPTSPDNKRPPILALVICPTRELANQAATEANTLLKY--HPSIGVQVVIGGT 169
Query: 271 NVKDQINQLNCG-VDVVVGTPGRLEDLIQG--GYLS-LTHCRFFVLDEADGLLKAGYGEL 438
+ + ++ ++V TPGRL+D I+ G+ + L + VLDEAD LL G+ +
Sbjct: 170 RLGLEQKRMQTNPCQILVATPGRLKDHIENTPGFATRLKGVKVLVLDEADHLLDMGFRKD 229
Query: 439 IERLHRQIPK 468
IER+ +PK
Sbjct: 230 IERIISAVPK 239
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 63.7 bits (148), Expect = 1e-10
Identities = 39/119 (32%), Positives = 62/119 (52%), Gaps = 2/119 (1%)
Frame = +1
Query: 118 STDIKPVNNAPQAIIIEPSRELAEQTCTQFTKFKKYLENPKIRELLVVGGINVKDQINQL 297
ST P + +II P+REL+ Q F L N + +L+VGG VK + +
Sbjct: 81 STSFPPKPHQVMGVIISPTRELSTQIYNVAQPFVSTLAN--VNSVLLVGGREVKADMKII 138
Query: 298 NC-GVDVVVGTPGRLEDLIQG-GYLSLTHCRFFVLDEADGLLKAGYGELIERLHRQIPK 468
G +V++GTPGRL D+++ L + +LDEAD LL+ G+ + + ++PK
Sbjct: 139 EEEGCNVLIGTPGRLSDIMERMEILDFRNLEILILDEADRLLEMGFQRQVNYIISRLPK 197
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 63.7 bits (148), Expect = 1e-10
Identities = 46/142 (32%), Positives = 77/142 (54%), Gaps = 1/142 (0%)
Frame = +1
Query: 145 APQAIIIEPSRELAEQTCTQFTKFKKYLENPKIRELLVVGGINVKDQINQLNCGVDVVVG 324
A + +I+ P+RELA Q + ++ + I+ L+VGG++V++Q L D+VV
Sbjct: 238 ATRVLILTPTRELAVQIHSMIQNLAQFTD---IKCGLIVGGLSVREQEVVLRSMPDIVVA 294
Query: 325 TPGRLEDLIQGGY-LSLTHCRFFVLDEADGLLKAGYGELIERLHRQIPKITSDGRRLQMV 501
TPGR+ D ++ + L +LDEAD LL+ G+ I L R PK R Q +
Sbjct: 295 TPGRMIDHLRNSMSVDLDDLAVLILDEADRLLQTGFATEITELVRLCPK------RRQTM 348
Query: 502 VCSATLHAFQVKKMAEKLMHFP 567
+ SAT+ +VK++ + ++ P
Sbjct: 349 LFSATM-TEEVKELVKLSLNKP 369
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 63.7 bits (148), Expect = 1e-10
Identities = 34/105 (32%), Positives = 60/105 (57%)
Frame = +1
Query: 148 PQAIIIEPSRELAEQTCTQFTKFKKYLENPKIRELLVVGGINVKDQINQLNCGVDVVVGT 327
P A+++ P+REL Q Q K L + LVVGG + Q+ ++ GV++++GT
Sbjct: 187 PLAMVLAPTRELCVQVEDQAKMLGKGLP---FKTALVVGGDPMSGQLYRIQQGVELIIGT 243
Query: 328 PGRLEDLIQGGYLSLTHCRFFVLDEADGLLKAGYGELIERLHRQI 462
PGR+ DL+ + L + FVLDE D +L+ G+ + + ++ + +
Sbjct: 244 PGRVVDLLSKHTIELDNIMTFVLDEVDCMLQRGFRDQVMQIFQAL 288
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 63.7 bits (148), Expect = 1e-10
Identities = 34/105 (32%), Positives = 60/105 (57%)
Frame = +1
Query: 148 PQAIIIEPSRELAEQTCTQFTKFKKYLENPKIRELLVVGGINVKDQINQLNCGVDVVVGT 327
P A+++ P+REL Q Q K L + LVVGG + Q+ ++ GV++++GT
Sbjct: 50 PLAMVLAPTRELCVQVEDQAKMLGKGLP---FKTALVVGGDPMSGQLYRIQQGVELIIGT 106
Query: 328 PGRLEDLIQGGYLSLTHCRFFVLDEADGLLKAGYGELIERLHRQI 462
PGR+ DL+ + L + FVLDE D +L+ G+ + + ++ + +
Sbjct: 107 PGRVVDLLSKHTIELDNIMTFVLDEVDCMLQRGFRDQVMQIFQAL 151
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 63.7 bits (148), Expect = 1e-10
Identities = 38/119 (31%), Positives = 63/119 (52%), Gaps = 2/119 (1%)
Frame = +1
Query: 118 STDIKPVNNAPQAIIIEPSRELAEQTCTQFTKFKKYLENPKIRELLVVGGINVKDQINQL 297
S P + +II P+REL+ Q F L P + +L+VGG V+ +N L
Sbjct: 81 SNSYPPKPHQVMGVIISPTRELSAQIHKVAEPFVSTL--PNVNSVLLVGGREVEADMNTL 138
Query: 298 NC-GVDVVVGTPGRLEDLIQG-GYLSLTHCRFFVLDEADGLLKAGYGELIERLHRQIPK 468
G ++++GTPGRL D+++ +L + +LDEAD LL G+ + + + ++PK
Sbjct: 139 EEEGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLPK 197
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 60.9 bits (141), Expect = 1e-09
Identities = 31/87 (35%), Positives = 45/87 (51%)
Frame = +1
Query: 148 PQAIIIEPSRELAEQTCTQFTKFKKYLENPKIRELLVVGGINVKDQINQLNCGVDVVVGT 327
P+ I++ P+ ELA Q K R ++V GG + Q+ L GVDV++ T
Sbjct: 452 PRVIVLVPTAELASQVLANCRSISK--SGVPFRSMVVTGGFRQRTQLENLEQGVDVLIAT 509
Query: 328 PGRLEDLIQGGYLSLTHCRFFVLDEAD 408
PGR L+ G L L++ R +LDE D
Sbjct: 510 PGRFTYLMNEGILGLSNLRCAILDEVD 536
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 59.3 bits (137), Expect = 3e-09
Identities = 37/108 (34%), Positives = 59/108 (54%), Gaps = 4/108 (3%)
Frame = +1
Query: 157 IIIEPSRELAEQTCTQFTKFKKYLENPKIRELLVVGGINVKDQINQLNCG-VDVVVGTPG 333
+++ P+RELA Q + KY +P I +V+GG + + ++ ++V TPG
Sbjct: 462 LVVCPTRELASQAAAEANTLLKY--HPSIGVQVVIGGTKLPTEQRRMQTNPCQILVATPG 519
Query: 334 RLEDLIQG--GYLS-LTHCRFFVLDEADGLLKAGYGELIERLHRQIPK 468
RL+D I+ G+ + L + VLDEAD LL G+ IER+ +PK
Sbjct: 520 RLKDHIENTSGFATRLMGVKVLVLDEADHLLDMGFRRDIERIIAAVPK 567
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 57.2 bits (132), Expect = 1e-08
Identities = 44/148 (29%), Positives = 74/148 (50%), Gaps = 1/148 (0%)
Frame = +1
Query: 142 NAPQAIIIEPSRELAEQTCTQFTKFKKYLENPKIRELLVVGGINVKDQINQLNCGVDVVV 321
N I+I P+RELA QT + K+ +V+GG N + + ++ G ++V+
Sbjct: 160 NGTGVIVICPTRELAIQTKNVAEELLKHHSQTVS---MVIGGNNRRSEAQRIASGSNLVI 216
Query: 322 GTPGRLEDLIQGGYLSL-THCRFFVLDEADGLLKAGYGELIERLHRQIPKITSDGRRLQM 498
TPGRL D +Q + H + V+DEAD +L+ + E + ++ + +PK Q
Sbjct: 217 ATPGRLLDHLQNTKAFIYKHLKCLVIDEADRILEENFEEDMNKILKILPKTR------QT 270
Query: 499 VVCSATLHAFQVKKMAEKLMHFPTWVDL 582
+ SAT +VK +A + P VD+
Sbjct: 271 ALFSAT-QTSKVKDLARVSLTSPVHVDV 297
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 56.4 bits (130), Expect = 2e-08
Identities = 38/108 (35%), Positives = 58/108 (53%), Gaps = 4/108 (3%)
Frame = +1
Query: 157 IIIEPSRELAEQTCTQFTKFKKYLENPKIRELLVVGGINVKDQINQLNCG-VDVVVGTPG 333
+++ P+RELA Q + KY +P I +V+GG + + +L ++V TPG
Sbjct: 160 LVVCPTRELACQAAAEANILLKY--HPSIGVQVVIGGTKLPTEQRRLQKSPCQILVATPG 217
Query: 334 RLEDLIQG--GYLS-LTHCRFFVLDEADGLLKAGYGELIERLHRQIPK 468
RL+D I G+ + L + VLDEAD LL G+ IER+ +PK
Sbjct: 218 RLKDHIDNTSGFATRLMGVKVLVLDEADHLLDMGFRREIERIIAAVPK 265
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 56.0 bits (129), Expect = 3e-08
Identities = 36/108 (33%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Frame = +1
Query: 151 QAIIIEPSRELAEQTCTQFTKFKKYLENPKIRELLVVGGINVKDQINQLNCGVDVVVGTP 330
+A+II P+RELA Q K N ++ + +VGG+ + Q +L ++VV TP
Sbjct: 281 RALIITPTRELALQVTEHLENAAK---NLSVKVVPIVGGMFSEKQERRLKEKPEIVVATP 337
Query: 331 GRLEDLIQGG---YLSLTHCRFFVLDEADGLLKAGYGELIERLHRQIP 465
GRL +L+ G + L FFVLDEAD +++ G+ ++ + +P
Sbjct: 338 GRLWELMSAGEKHLVELHSLSFFVLDEADRMVERGHFRELQSILDLLP 385
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 54.8 bits (126), Expect = 7e-08
Identities = 44/149 (29%), Positives = 78/149 (52%), Gaps = 2/149 (1%)
Frame = +1
Query: 142 NAPQAIIIEPSRELAEQTCTQFTKFKKYLENPKIRELLVVGGINVKDQINQLNCGVDVVV 321
N ++I P+RELA Q+ + KY + V+GG K + L GV+++V
Sbjct: 225 NGTGVLVICPTRELAIQSYGVAKELLKYHSQTVGK---VIGGEKRKTEAEILAKGVNLLV 281
Query: 322 GTPGRLEDLIQ--GGYLSLTHCRFFVLDEADGLLKAGYGELIERLHRQIPKITSDGRRLQ 495
TPGRL D ++ G++ + +F V+DEAD +L+ + E ++++ +PK Q
Sbjct: 282 ATPGRLLDHLENTNGFI-FKNLKFLVMDEADRILEQNFEEDLKKILNLLPKTR------Q 334
Query: 496 MVVCSATLHAFQVKKMAEKLMHFPTWVDL 582
+ SAT A +V+ +A + P ++D+
Sbjct: 335 TSLFSATQSA-KVEDLARVSLTSPVYIDV 362
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 54.8 bits (126), Expect = 7e-08
Identities = 48/161 (29%), Positives = 77/161 (47%), Gaps = 8/161 (4%)
Frame = +1
Query: 145 APQAIIIEPSRELAEQTCTQFTKFKKYLENPKIRELLVVGGINVKDQINQLNCGVDVVVG 324
AP A I+ PSREL +Q T+ + + L +++ + + ++ D N L +++V
Sbjct: 120 APSAFILVPSRELCQQVYTEVSSLIE-LCRVQLKAVQLTSSMSASDMRNALAGLPEILVS 178
Query: 325 TPGRLEDLIQGGYLSLT----HCRFFVLDEADGLLKAGYGELIERLHRQIPKITSDGRRL 492
TP + G L T VLDEAD LL GY + + + IP RR
Sbjct: 179 TPACIPKCFAAGVLEPTAVSESLSILVLDEADLLLSYGYEDNLRSVTSIIP------RRC 232
Query: 493 QMVVCSATLHAFQVKKMAEKLMHFPTWV----DLKGEDAVP 603
Q ++ SAT + V+K+ + ++H P + D E+AVP
Sbjct: 233 QCLLMSATTSS-DVEKLKKLILHNPIVLTLTEDNDKEEAVP 272
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 54.4 bits (125), Expect = 9e-08
Identities = 51/191 (26%), Positives = 83/191 (43%), Gaps = 2/191 (1%)
Frame = +1
Query: 28 PFKXPPPNGYIAISQAPKENVKQNVIAAVASTDIKPVNNAPQAIIIEPSRELAEQTCTQF 207
P PP+ ++ I+QA + K + + P PQA+ I P+RELA Q
Sbjct: 124 PMIMTPPHKHL-IAQAHNGSGKTTCFVLGMLSRVDPTLREPQALCICPTRELANQNMEVL 182
Query: 208 TKFKKYLENPKIRELLVVGGINVKDQINQ-LNCGVDVVVGTPGRLEDLIQGGYLSLTHCR 384
K K+ EL V + VV+GTPG L+ + L L H +
Sbjct: 183 QKMGKF--TGITAELAVPDSTRGAPAATRGAPVSAHVVIGTPGTLKKWMAFKRLGLNHLK 240
Query: 385 FFVLDEADGLLKA-GYGELIERLHRQIPKITSDGRRLQMVVCSATLHAFQVKKMAEKLMH 561
V DEAD +L G+ + ++ + I ++ + Q+++ SAT + VK + +
Sbjct: 241 ILVFDEADHMLATDGFRDDSLKIMKDIGRVNPN---FQVLLFSATFNE-TVKDFVARTVK 296
Query: 562 FPTWVDLKGED 594
P + +K ED
Sbjct: 297 DPNQLFVKRED 307
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 54.0 bits (124), Expect = 1e-07
Identities = 33/108 (30%), Positives = 58/108 (53%), Gaps = 3/108 (2%)
Frame = +1
Query: 154 AIIIEPSRELAEQTCTQFTKFKKYLENPKIRELLVVGGINVKDQINQLNCGVDVVVGTPG 333
A+++ P+RELA Q QF L +R ++VGG+++ Q L +V+ TPG
Sbjct: 129 ALVVTPTRELAFQLAEQFKALGSCLN---LRCSVIVGGMDMLTQTMSLVSRPHIVITTPG 185
Query: 334 RLEDLIQGGY---LSLTHCRFFVLDEADGLLKAGYGELIERLHRQIPK 468
R++ L++ + +F VLDEAD +L G+ + + + + +PK
Sbjct: 186 RIKVLLENNPDVPPVFSRTKFLVLDEADRVLDVGFQDELRTIFQCLPK 233
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 53.2 bits (122), Expect = 2e-07
Identities = 36/105 (34%), Positives = 54/105 (51%), Gaps = 1/105 (0%)
Frame = +1
Query: 154 AIIIEPSRELAEQTCTQFTKFKKYLENPKIRELLVVGGINVKDQINQLNCGVDVVVGTPG 333
A ++ P+RELA Q QF + +R ++VGGI+ Q L V+V TPG
Sbjct: 92 ACVLSPTRELAIQIAEQFEALGADIS---LRCAVLVGGIDRMQQTIALGKRPHVIVATPG 148
Query: 334 RLED-LIQGGYLSLTHCRFFVLDEADGLLKAGYGELIERLHRQIP 465
RL D + SL ++ VLDEAD LL + + + ++ +IP
Sbjct: 149 RLWDHMSDTKGFSLKSLKYLVLDEADRLLNEDFEKSLNQILEEIP 193
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 49.6 bits (113), Expect = 3e-06
Identities = 38/116 (32%), Positives = 57/116 (49%), Gaps = 2/116 (1%)
Frame = +1
Query: 154 AIIIEPSRELAEQTCTQFTKFKKYLENPKIRELLVVGGINVKDQINQLNCGVDVVVGTPG 333
A++I P+REL Q K I V+GG + +L G+ +++ TPG
Sbjct: 107 ALVIVPTRELCLQVYETLEKLLHRFH--WIVPGYVMGGEKKAKEKARLRKGISILIATPG 164
Query: 334 RLEDLIQGGYLSLTH--CRFFVLDEADGLLKAGYGELIERLHRQIPKITSDGRRLQ 495
RL D ++ S H R+ + DEAD +L+ GYG+ IE QI K+ G+ Q
Sbjct: 165 RLLDHLKNT-ASFVHKNLRWVIFDEADSILELGYGKEIE----QIIKLLGSGQNEQ 215
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 48.8 bits (111), Expect = 5e-06
Identities = 41/139 (29%), Positives = 75/139 (53%), Gaps = 4/139 (2%)
Frame = +1
Query: 154 AIIIEPSRELAEQTCTQFTKFKKYLENPKIRELLVVGGINVK-DQINQLNCGVDVVVGTP 330
A+I+ P+RELA Q + K+ + ++ L +GG K DQ + +++ TP
Sbjct: 408 ALILCPTRELASQIAAEGKALLKFHDGIGVQTL--IGGTRFKLDQQRLESEPCQILIATP 465
Query: 331 GRLEDLIQ--GGYLS-LTHCRFFVLDEADGLLKAGYGELIERLHRQIPKITSDGRRLQMV 501
GRL D I+ G S L + F++DEAD LL G+ +E++ +P R+ Q +
Sbjct: 466 GRLLDHIENKSGLTSRLMALKLFIVDEADLLLDLGFRRDVEKIIDCLP------RQRQSL 519
Query: 502 VCSATLHAFQVKKMAEKLM 558
+ SAT+ +V+++++ ++
Sbjct: 520 LFSATIPK-EVRRVSQLVL 537
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 48.0 bits (109), Expect = 8e-06
Identities = 47/160 (29%), Positives = 81/160 (50%)
Frame = +1
Query: 130 KPVNNAPQAIIIEPSRELAEQTCTQFTKFKKYLENPKIRELLVVGGINVKDQINQLNCGV 309
+P + +A+I+ P+RELA QT + K K N IR L+ + D ++L C
Sbjct: 205 RPSTDGIRAVILSPARELAAQTAREGKKLIKG-SNFHIR-LMTKPLVKTAD-FSKLWC-- 259
Query: 310 DVVVGTPGRLEDLIQGGYLSLTHCRFFVLDEADGLLKAGYGELIERLHRQIPKITSDGRR 489
DV++ TP RL+ I+ + L+ + VLDE+D L + + I+ + K S+
Sbjct: 260 DVLISTPMRLKRAIKAKKIDLSKVEYLVLDESDKLFEQSLLKQID----CVVKACSNPSI 315
Query: 490 LQMVVCSATLHAFQVKKMAEKLMHFPTWVDLKGEDAVPET 609
++ + SATL V+++A +MH V + ++ ET
Sbjct: 316 IRSLF-SATL-PDSVEELARSIMHDAVRVIIGRKNTASET 353
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 47.6 bits (108), Expect = 1e-05
Identities = 46/181 (25%), Positives = 81/181 (44%), Gaps = 5/181 (2%)
Frame = +1
Query: 157 IIIEPSRELAEQTCTQFTKFKKYLENPKIRELLVVGGINVKDQINQLNCGVDVVVGTPGR 336
III P+RELA QT K K+ K L++GG D + ++++V PGR
Sbjct: 147 IIISPTRELAAQTFGVLNKVGKF---HKFSAGLLIGGREGVDVEKERVHEMNILVCAPGR 203
Query: 337 -LEDLIQGGYLSLTHCRFFVLDEADGLLKAGYGELIERLHRQIPKITSDGRRLQMVVCSA 513
L+ + + + +LDEAD +L + + ++ + Q+PK Q ++ SA
Sbjct: 204 LLQHMDETPNFECPQLQILILDEADRVLDSAFKGQLDPIISQLPK------HRQTLLFSA 257
Query: 514 TLHAFQVKKMAEKLMHFPTWVDLKGE--DAVPETXXXXXXXXDPQK--DSSWQTLRKHVQ 681
T +VK +A + P ++ + E A P + +K D W ++ H+
Sbjct: 258 T-QTKKVKDLARLSLRDPEYISVHAEAVTATPTSLMQTVMIVPVEKKLDMLWSFIKTHLN 316
Query: 682 T 684
+
Sbjct: 317 S 317
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 47.2 bits (107), Expect = 1e-05
Identities = 34/118 (28%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
Frame = +1
Query: 118 STDIKPVNNAPQAIIIEPSRELAEQTCTQFTKFKKYLENPKIRELLVVGGINVKDQINQL 297
S P + +II P+REL+ Q + L+ K RE V +N ++
Sbjct: 82 SNSYPPKPHQVMGVIISPTRELSAQIHKVARAVR--LDFAKCRE--VEADMNTLEEE--- 134
Query: 298 NCGVDVVVGTPGRLEDLIQG-GYLSLTHCRFFVLDEADGLLKAGYGELIERLHRQIPK 468
G ++++GTPGRL D+++ +L + +LDEAD LL G+ + + + ++PK
Sbjct: 135 --GANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLPK 190
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 42.7 bits (96), Expect = 3e-04
Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Frame = +1
Query: 280 DQINQ-LNCGVDVVVGTPGRLEDLIQGGY-LSLTHCRFFVLDEADGLLKAGY 429
D ++Q L VD++V TPGRL D I +L H R+ V+DE D LL+ Y
Sbjct: 156 DDLSQNLESAVDILVATPGRLMDHINNTKGFTLEHLRYLVVDETDRLLREAY 207
>At2g28600.1 68415.m03476 expressed protein
Length = 502
Score = 31.1 bits (67), Expect = 0.97
Identities = 25/110 (22%), Positives = 50/110 (45%), Gaps = 1/110 (0%)
Frame = +1
Query: 136 VNNAPQAIIIEPSRELAEQTCTQFTKFKKYLENPKIRELLVVGGINVKDQINQL-NCGVD 312
+ N+P + + PS+ A Q K L+ I + + G + QI+ L + +
Sbjct: 193 LGNSPFLLYLVPSQSKASQV----RSVCKALKGIGIHTVSLHQGAPLDHQISGLKSVEPE 248
Query: 313 VVVGTPGRLEDLIQGGYLSLTHCRFFVLDEADGLLKAGYGELIERLHRQI 462
+V TP RL +++ + +++ V+DE L GY ++ + + I
Sbjct: 249 FIVATPERLLEIVTLKGVDISNVSLLVIDELGSLCSGGYLNAVKSIKQAI 298
>At5g64460.2 68418.m08098 expressed protein
Length = 282
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 661 TLRKHVQTDGVHAKDNIRSGNTTPETLSEAVXILKGK 771
+LRKHV + G+H K + + TL AV + G+
Sbjct: 59 SLRKHVHSSGLHKKIELVISSPLMRTLQTAVGVFGGE 95
>At5g64460.1 68418.m08097 expressed protein
Length = 282
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 661 TLRKHVQTDGVHAKDNIRSGNTTPETLSEAVXILKGK 771
+LRKHV + G+H K + + TL AV + G+
Sbjct: 59 SLRKHVHSSGLHKKIELVISSPLMRTLQTAVGVFGGE 95
>At2g43110.1 68415.m05352 expressed protein
Length = 288
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +1
Query: 268 INVKDQINQLNCGVDVVVGTPGRLEDLIQGGYLSLTHCRFFVLD 399
+ V++Q++ L V++ GTP R++ L+ L L+ V+D
Sbjct: 189 LKVEEQVSLLKKRVNIGSGTPNRIKKLVDIEALGLSRLDMIVID 232
>At3g23560.1 68416.m02964 MATE efflux family protein similar to
ripening regulated protein DDTFR18 [Lycopersicon
esculentum] GI:12231296; contains Pfam profile: PF01554
uncharacterized membrane protein family
Length = 477
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = -1
Query: 695 CTPSVCTCLRSVCQELSFCGSTFTTTWCTVSGTA 594
C P S +L G+T +W TVSG A
Sbjct: 59 CIPITSVMFASHLGQLELAGATLANSWATVSGFA 92
>At1g77600.1 68414.m09035 expressed protein weak similarity to Pds5
(GI:16751524) [Schizosaccharomyces pombe]; weak
similarity to androgen-induced prostate proliferative
shutoff associated protein (GI:4559410) [Homo sapiens]
Length = 1285
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -1
Query: 716 LRMLSLACTPSVCTCLRSVCQELSFCGSTFTTT 618
LR+LS C+PS+ + C CGST T
Sbjct: 614 LRILSTKCSPSIFSSEHVQCLLNQLCGSTSANT 646
>At1g30640.1 68414.m03747 protein kinase, putative contains protein
kinase domain, Pfam:PF00069
Length = 562
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +1
Query: 193 TCTQFTKFKKYLENPKIRELLVVGGINVKDQINQLNCGVDVVVGTPG 333
TC + +K L+ P +L I VKD I +L C V+ +GT G
Sbjct: 371 TCRKIVNWKTCLKFPDEAKL----SIEVKDLIRRLLCNVEQRLGTKG 413
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,558,806
Number of Sequences: 28952
Number of extensions: 427464
Number of successful extensions: 1241
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 1143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1182
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1980143200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -