Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_C10
         (849 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00035-3|AAA50645.1|  548|Caenorhabditis elegans Egg sterile (un...    29   3.2  
Z81086-6|CAB03116.1|  610|Caenorhabditis elegans Hypothetical pr...    28   9.6  
Z75531-12|CAA99806.4|  348|Caenorhabditis elegans Hypothetical p...    28   9.6  
Z70212-7|CAA94167.1|  332|Caenorhabditis elegans Hypothetical pr...    28   9.6  

>U00035-3|AAA50645.1|  548|Caenorhabditis elegans Egg sterile
           (unfertilizable) protein2 protein.
          Length = 548

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
 Frame = -1

Query: 261 FSSLAKATTANDATKITRIDTIIPVVSACSLVSNHIQPKNYSTRKHI-FFF*SSIQRVKA 85
           FSS  K  T +D  + + ++    +V AC L      PK+  T   +       I+R K 
Sbjct: 336 FSSKLKLLTCDDGNQYSEVEACSGLVEACELNCPKCDPKHTFTCPAVGGIHNKCIKRSKV 395

Query: 84  ADGFF 70
            DG F
Sbjct: 396 CDGIF 400


>Z81086-6|CAB03116.1|  610|Caenorhabditis elegans Hypothetical
           protein F53B6.6 protein.
          Length = 610

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 18/58 (31%), Positives = 30/58 (51%)
 Frame = -3

Query: 367 AVAFIATSEIMSSIRSYVIDAPFVLFLLFDCLRCAFLLLGKGNHGQRCHQNNPDRYHN 194
           +++F ++SE+  S  S VI +  +L  LF C+   FL+  + N  Q  H  +  R  N
Sbjct: 553 SLSFQSSSEVCLSKTSTVIFSTAILLALFCCVTVKFLVTRQRNR-QLLHHASKRRIDN 609


>Z75531-12|CAA99806.4|  348|Caenorhabditis elegans Hypothetical
           protein C54D10.6 protein.
          Length = 348

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -3

Query: 364 VAFIATSEIMSSIRSYVIDAPFVLFLLFDCLRCAFLLLG 248
           +  IAT  ++S+I + ++  P+ +F    C RC  +  G
Sbjct: 283 LCLIATHGLLSTITTIMVHKPYRVFFFILCRRCLLMPAG 321


>Z70212-7|CAA94167.1|  332|Caenorhabditis elegans Hypothetical
           protein R04D3.9 protein.
          Length = 332

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
 Frame = -1

Query: 216 ITRIDTIIPVVSAC---SLVSNHIQ--PKNYSTRKHIFFF*SSIQRVKAADGFF 70
           +T  D ++ +VS C   +L+   I+  PKN ST K I    S  Q V+++  FF
Sbjct: 6   LTVFDPLVFIVSLCFQSTLIYTIIRHSPKNISTLKSILLINSCFQLVQSSMAFF 59


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,627,101
Number of Sequences: 27780
Number of extensions: 237193
Number of successful extensions: 701
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)