Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_C10
         (849 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g03500.1 68417.m00477 ankyrin repeat family protein contains ...    30   1.7  
At2g31160.1 68415.m03804 expressed protein contains Pfam profile...    29   5.2  
At5g07270.1 68418.m00829 ankyrin repeat family protein contains ...    28   6.8  
At3g52680.1 68416.m05803 F-box family protein contains F-box dom...    28   9.0  
At3g44670.1 68416.m04804 disease resistance protein RPP1-Ws[A,C]...    28   9.0  
At3g44480.1 68416.m04781 disease resistance protein (TIR-NBS-LRR...    28   9.0  
At1g61050.1 68414.m06873 alpha 1,4-glycosyltransferase family pr...    28   9.0  

>At4g03500.1 68417.m00477 ankyrin repeat family protein contains
           ankyrin repeats, Pfam:PF00023
          Length = 652

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -3

Query: 721 YLTYSLTVKGTFFSXGVGLXYGHFHLIGYFLLDGIGDVFL 602
           +L  +LT     F  G  +   H  L+GYF+L GIG +FL
Sbjct: 563 FLGLALTSMSIAFMAGTYVAVSHLPLLGYFVL-GIGIIFL 601


>At2g31160.1 68415.m03804 expressed protein contains Pfam profile
           PF04852: Protein of unknown function (DUF640)
          Length = 219

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 20/52 (38%), Positives = 27/52 (51%)
 Frame = +1

Query: 568 GGKEGACSVYSRETRPLYRREESTL*GESARTSALHRSKRKFPLPSRNTSNT 723
           GGK       +R  R LY RE   +    AR  +  + KRK PLPS +TS++
Sbjct: 145 GGKPETNPFGARAVR-LYLREVRDM-QSKARGVSYEKKKRKRPLPSSSTSSS 194


>At5g07270.1 68418.m00829 ankyrin repeat family protein contains
           ankyrin repeats, Pfam:PF00023
          Length = 513

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -2

Query: 320 LCHRCPFCLVSSLRLPSVCLSPP 252
           LC RC   L SS  +PSV + PP
Sbjct: 331 LCVRCALYLCSSSNVPSVTVGPP 353


>At3g52680.1 68416.m05803 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 456

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = -3

Query: 319 YVIDAPFVLFLLFDCLRC 266
           YVI+APF+ +LL + LRC
Sbjct: 238 YVINAPFLKYLLIEELRC 255


>At3g44670.1 68416.m04804 disease resistance protein
           RPP1-Ws[A,C]-like (TIR-NBS-LRR class), putative domain
           signature TIR-NBS-LRR exists, suggestive of a disease
           resistance protein. Closest Col-0 homolog to both RPP1
           Ws-A and RPP1 Ws-C
          Length = 872

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +1

Query: 574 KEGACSVYSRETRPLYRREESTL*GESARTSA 669
           K G C +  RETR L R     L  ES+R S+
Sbjct: 787 KIGECGILQRETRSLRRSSSPDLSPESSRVSS 818


>At3g44480.1 68416.m04781 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1194

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +1

Query: 574  KEGACSVYSRETRPLYRREESTL*GESARTSA 669
            K G C +  RETR L R     L  ES+R S+
Sbjct: 1155 KIGECGILQRETRSLRRSSSPDLSPESSRVSS 1186


>At1g61050.1 68414.m06873 alpha 1,4-glycosyltransferase family
           protein / glycosyltransferase sugar-binding DXD
           motif-containing protein low similarity to
           alpha-1,4-N-acetylglucosaminyltransferase, Homo sapiens
           [gi:5726306], Gb3 synthase, Rattus norvegicus
           [gi:9082162] ; contains Pfam profiles PF04572: Alpha
           1,4-glycosyltransferase conserved region, PF04488:
           Glycosyltransferase sugar-binding region containing DXD
           motif
          Length = 435

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -2

Query: 389 ALHSFRDRRSLHRYLRNYVLHKILCHRCPFCLVSSLRL 276
           A+H +       R     ++H+++ H C FC  SSL L
Sbjct: 397 AVHLWNRESKKLRIEEGSIIHQLMSHSCIFCNSSSLHL 434


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,882,687
Number of Sequences: 28952
Number of extensions: 219152
Number of successful extensions: 568
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1970388800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)