Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_C09
(863 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P36578 Cluster: 60S ribosomal protein L4; n=70; Eukaryo... 143 4e-33
UniRef50_P09180 Cluster: 60S ribosomal protein L4; n=96; Eukaryo... 140 3e-32
UniRef50_A7E7X3 Cluster: 60S ribosomal protein L4; n=2; Scleroti... 125 1e-27
UniRef50_Q4U6T4 Cluster: SL3; n=1; Brugia malayi|Rep: SL3 - Brug... 125 2e-27
UniRef50_A3FPV6 Cluster: 60S ribosomal protein-like, putative; n... 111 3e-23
UniRef50_Q4UES5 Cluster: 60S ribosomal subunit protein L4/L1, pu... 110 5e-23
UniRef50_Q4FXU6 Cluster: Ribosomal protein L1a, putative; n=1; L... 109 7e-23
UniRef50_Q3SEA6 Cluster: Ribosomal protein L4, putative; n=2; Ol... 108 2e-22
UniRef50_Q4XUM2 Cluster: 60S ribosomal subunit protein L4/L1, pu... 107 5e-22
UniRef50_A7AUF0 Cluster: Ribosomal protein RPL4A; n=1; Babesia b... 107 5e-22
UniRef50_UPI0000499FAF Cluster: 60S ribosomal protein L4; n=5; E... 93 1e-17
UniRef50_Q8SRC2 Cluster: 60S RIBOSOMAL PROTEIN L4; n=1; Encephal... 93 1e-17
UniRef50_Q98S44 Cluster: 60s ribosomal protein L1; n=2; Cryptomo... 91 4e-17
UniRef50_Q5MGK5 Cluster: Ribosomal protein 23; n=2; Endopterygot... 90 6e-17
UniRef50_Q1KYM6 Cluster: RPL4; n=1; Streblomastix strix|Rep: RPL... 89 2e-16
UniRef50_A2E1Z6 Cluster: Ribosomal protein, putative; n=3; Trich... 80 8e-14
UniRef50_Q7R0P2 Cluster: GLP_79_45017_44067; n=1; Giardia lambli... 78 3e-13
UniRef50_UPI00005A2ACC Cluster: PREDICTED: similar to ribosomal ... 75 3e-12
UniRef50_Q0U8Q3 Cluster: Putative uncharacterized protein; n=1; ... 72 2e-11
UniRef50_Q8TY91 Cluster: 50S ribosomal protein L4P; n=13; Euryar... 67 6e-10
UniRef50_Q00UB0 Cluster: Ribosomal protein RPL1/RPL2/RL4L4; n=1;... 57 7e-07
UniRef50_Q2NFV7 Cluster: 50S ribosomal protein L4P; n=2; Euryarc... 56 1e-06
UniRef50_Q3LWC7 Cluster: Ribosomal protein L4A; n=1; Bigelowiell... 54 4e-06
UniRef50_Q9UXA6 Cluster: 50S ribosomal protein L4P; n=3; Archaea... 54 5e-06
UniRef50_Q9YFM1 Cluster: 50S ribosomal protein L4P; n=8; Archaea... 52 2e-05
UniRef50_Q8ZW51 Cluster: 50S ribosomal protein L4P; n=9; Archaea... 51 3e-05
UniRef50_P12735 Cluster: 50S ribosomal protein L4P; n=1; Haloarc... 48 2e-04
UniRef50_O28355 Cluster: 50S ribosomal protein L4P; n=9; Euryarc... 48 4e-04
UniRef50_A0RVX5 Cluster: Ribosomal protein L4; n=2; Thermoprotei... 46 0.002
UniRef50_UPI00005A24EF Cluster: PREDICTED: similar to ribosomal ... 44 0.005
UniRef50_A7R5H8 Cluster: Chromosome undetermined scaffold_974, w... 44 0.005
UniRef50_Q95YH2 Cluster: Ribosomal protein L4; n=1; Paramecium c... 43 0.012
UniRef50_Q673S8 Cluster: Ribosomal protein L4; n=3; cellular org... 43 0.012
UniRef50_Q9HIR0 Cluster: 50S ribosomal protein L4P; n=4; Thermop... 42 0.027
UniRef50_Q9UFE2 Cluster: Putative uncharacterized protein DKFZp4... 38 0.43
UniRef50_UPI00015B4B32 Cluster: PREDICTED: hypothetical protein;... 37 0.57
UniRef50_Q4FXU7 Cluster: Putative uncharacterized protein; n=2; ... 37 0.57
UniRef50_Q9P6C0 Cluster: Putative uncharacterized protein B17C10... 35 2.3
UniRef50_A0CJI5 Cluster: Chromosome undetermined scaffold_2, who... 35 3.1
UniRef50_Q15911 Cluster: Zinc finger homeobox protein 3; n=25; A... 34 4.0
UniRef50_P14653 Cluster: Homeobox protein Hox-B1; n=29; Euteleos... 34 4.0
UniRef50_Q1LUY5 Cluster: Ribosomal protein L4; n=1; Danio rerio|... 34 5.3
UniRef50_A6FXV5 Cluster: Putative uncharacterized protein; n=1; ... 34 5.3
UniRef50_A0H7D7 Cluster: Cytochrome c, class I; n=4; Comamonadac... 34 5.3
UniRef50_A7Q400 Cluster: Chromosome chr13 scaffold_48, whole gen... 34 5.3
UniRef50_A7F9H5 Cluster: Putative uncharacterized protein; n=1; ... 34 5.3
UniRef50_A6SHQ7 Cluster: Putative uncharacterized protein; n=1; ... 34 5.3
UniRef50_Q6TYB9 Cluster: Dauer abnormal formation-2 precursor; n... 33 7.1
UniRef50_Q6ZQU4 Cluster: CDNA FLJ46885 fis, clone UTERU3016274; ... 33 7.1
UniRef50_Q68DE3 Cluster: Basic helix-loop-helix domain-containin... 33 7.1
UniRef50_A5UPY3 Cluster: HAD-superfamily hydrolase, subfamily IA... 33 9.3
UniRef50_Q7QNZ3 Cluster: GLP_149_9791_7437; n=2; Giardia lamblia... 33 9.3
UniRef50_Q46BU5 Cluster: Transcriptional regulator HTH-type, Ars... 33 9.3
>UniRef50_P36578 Cluster: 60S ribosomal protein L4; n=70;
Eukaryota|Rep: 60S ribosomal protein L4 - Homo sapiens
(Human)
Length = 427
Score = 143 bits (347), Expect = 4e-33
Identities = 68/91 (74%), Positives = 77/91 (84%)
Frame = +1
Query: 115 LSVARPLLSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 294
++ ARPL+SVYSEK E+ G LP VFKAPIRPD+VN VH ++ KN+RQPY VS+ AG
Sbjct: 1 MACARPLISVYSEKGES-SGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAG 59
Query: 295 HQTSAESWGTGRAVARIPRVRGGGTHRSGQG 387
HQTSAESWGTGRAVARIPRVRGGGTHRSGQG
Sbjct: 60 HQTSAESWGTGRAVARIPRVRGGGTHRSGQG 90
Score = 68.5 bits (160), Expect = 2e-10
Identities = 37/102 (36%), Positives = 48/102 (47%)
Frame = +3
Query: 549 LKRFPSFPWVVADKVQEINKTKQAVIFLRRLKAWSDILXGVQVSASSCW*G*NAQPSSYP 728
++ P P VV DKV+ KTK+AV+ L++LKAW+DI G
Sbjct: 144 IEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQ 203
Query: 729 AXGPLIIFXXDQGLTRAFRNIPGXXXXXXXXXXXXXXAXGGH 854
GP II+ D G+ +AFRNIPG A GGH
Sbjct: 204 RRGPCIIYNEDNGIIKAFRNIPGITLLNVSKLNILKLAPGGH 245
Score = 68.1 bits (159), Expect = 3e-10
Identities = 30/62 (48%), Positives = 34/62 (54%)
Frame = +2
Query: 389 AFGNMCRGGRMFAPTKPWRRWHHXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPEL 568
AFGNMCRGGRMFAPTK WRRWH ++GH IE++PEL
Sbjct: 91 AFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSKGHRIEEVPEL 150
Query: 569 PL 574
PL
Sbjct: 151 PL 152
Score = 47.2 bits (107), Expect = 5e-04
Identities = 21/25 (84%), Positives = 22/25 (88%)
Frame = +1
Query: 667 VYKSQRLRAGKGKMRNRRRIQRXDP 741
VY SQR+RAGKGKMRNRRRIQR P
Sbjct: 183 VYASQRMRAGKGKMRNRRRIQRRGP 207
>UniRef50_P09180 Cluster: 60S ribosomal protein L4; n=96;
Eukaryota|Rep: 60S ribosomal protein L4 - Drosophila
melanogaster (Fruit fly)
Length = 401
Score = 140 bits (340), Expect = 3e-32
Identities = 67/93 (72%), Positives = 77/93 (82%)
Frame = +1
Query: 109 MSLSVARPLLSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKE 288
MSL ARPL+SVY+EK+E + LP VFKAPIRPD+VN+VH + +N+RQ Y VS+
Sbjct: 1 MSLGNARPLVSVYTEKNEPAKDKNICLPAVFKAPIRPDVVNEVHQLLRRNNRQAYAVSEL 60
Query: 289 AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQG 387
AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQG
Sbjct: 61 AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQG 93
Score = 78.6 bits (185), Expect = 2e-13
Identities = 41/96 (42%), Positives = 52/96 (54%)
Frame = +3
Query: 567 FPWVVADKVQEINKTKQAVIFLRRLKAWSDILXGVQVSASSCW*G*NAQPSSYPAXGPLI 746
FP VV+D+VQ++ KTKQAVIFLRRLK W+DI + G GPL+
Sbjct: 153 FPLVVSDEVQKVQKTKQAVIFLRRLKIWADIQKVYKSQRFRAGRGTMRDRRRIARRGPLV 212
Query: 747 IFXXDQGLTRAFRNIPGXXXXXXXXXXXXXXAXGGH 854
++ D+GL +AFRNIPG A GGH
Sbjct: 213 VYDKDEGLRKAFRNIPGIETINVDKLNLLKLAPGGH 248
Score = 61.3 bits (142), Expect = 3e-08
Identities = 27/62 (43%), Positives = 33/62 (53%)
Frame = +2
Query: 389 AFGNMCRGGRMFAPTKPWRRWHHXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPEL 568
AFGNMCRGGRMFAPTK +RRWH Q++GH+I+ + E
Sbjct: 94 AFGNMCRGGRMFAPTKTFRRWHRKVNVNQRRYALVSAIAASGVPALVQSKGHVIDGVSEF 153
Query: 569 PL 574
PL
Sbjct: 154 PL 155
>UniRef50_A7E7X3 Cluster: 60S ribosomal protein L4; n=2;
Sclerotiniaceae|Rep: 60S ribosomal protein L4 -
Sclerotinia sclerotiorum 1980
Length = 373
Score = 125 bits (302), Expect = 1e-27
Identities = 59/87 (67%), Positives = 67/87 (77%)
Frame = +1
Query: 124 ARPLLSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQT 303
+RP +SV S T G PLP VF +PIRPD+V VH M+KN RQPY VS++AGHQT
Sbjct: 3 SRPTVSVLSADG-TATGTTIPLPKVFTSPIRPDIVQTVHTGMAKNKRQPYAVSEKAGHQT 61
Query: 304 SAESWGTGRAVARIPRVRGGGTHRSGQ 384
SAESWGTGRAVARIPRV GGGTHR+GQ
Sbjct: 62 SAESWGTGRAVARIPRVSGGGTHRAGQ 88
Score = 58.8 bits (136), Expect = 2e-07
Identities = 27/62 (43%), Positives = 31/62 (50%)
Frame = +2
Query: 389 AFGNMCRGGRMFAPTKPWRRWHHXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPEL 568
AFGNMCR GRMFAPTK WR+WH ARGH I ++ E+
Sbjct: 90 AFGNMCRSGRMFAPTKVWRKWHQKINLGQKRFATVSALAASGVPALLFARGHQISEVAEV 149
Query: 569 PL 574
PL
Sbjct: 150 PL 151
Score = 33.1 bits (72), Expect = 9.3
Identities = 15/25 (60%), Positives = 18/25 (72%)
Frame = +1
Query: 667 VYKSQRLRAGKGKMRNRRRIQRXDP 741
V S++LRAGKGK+R RR QR P
Sbjct: 185 VKDSRKLRAGKGKLRGRRHRQRRGP 209
>UniRef50_Q4U6T4 Cluster: SL3; n=1; Brugia malayi|Rep: SL3 - Brugia
malayi (Filarial nematode worm)
Length = 306
Score = 125 bits (301), Expect = 2e-27
Identities = 59/82 (71%), Positives = 67/82 (81%)
Frame = +1
Query: 142 VYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWG 321
VY++KSE + LP VF+AP+RPD+V+ VH + KN RQPY VS EAGHQTSAESWG
Sbjct: 127 VYNDKSEPTDTQIR-LPGVFRAPLRPDIVSFVHDQIRKNKRQPYAVSVEAGHQTSAESWG 185
Query: 322 TGRAVARIPRVRGGGTHRSGQG 387
TGRAVARIPRVRGGGTHRSGQG
Sbjct: 186 TGRAVARIPRVRGGGTHRSGQG 207
Score = 51.6 bits (118), Expect = 2e-05
Identities = 20/22 (90%), Positives = 21/22 (95%)
Frame = +2
Query: 389 AFGNMCRGGRMFAPTKPWRRWH 454
AFGNMCRGGRMFAPTK +RRWH
Sbjct: 208 AFGNMCRGGRMFAPTKVFRRWH 229
>UniRef50_A3FPV6 Cluster: 60S ribosomal protein-like, putative; n=4;
Cryptosporidium|Rep: 60S ribosomal protein-like,
putative - Cryptosporidium parvum Iowa II
Length = 394
Score = 111 bits (266), Expect = 3e-23
Identities = 54/91 (59%), Positives = 65/91 (71%)
Frame = +1
Query: 115 LSVARPLLSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 294
++ ARP++SV+ T ++ PLP VF +P+R DLV V +MSKN RQ Y VS +AG
Sbjct: 1 MTFARPIVSVFPSNDSTKATSSIPLPTVFVSPLRHDLVRYVFTNMSKNKRQAYGVSTKAG 60
Query: 295 HQTSAESWGTGRAVARIPRVRGGGTHRSGQG 387
HQ SAESWGTGRAVARIPRV GT RSGQG
Sbjct: 61 HQHSAESWGTGRAVARIPRVSASGTSRSGQG 91
Score = 56.0 bits (129), Expect = 1e-06
Identities = 27/67 (40%), Positives = 32/67 (47%)
Frame = +2
Query: 389 AFGNMCRGGRMFAPTKPWRRWHHXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPEL 568
AFGNMCRGG MF+P K +RR+H ARGH I +PEL
Sbjct: 92 AFGNMCRGGHMFSPNKTYRRFHRKINTTEKRHAVAAAIAATGCPSLVMARGHRINNVPEL 151
Query: 569 PLGCSRQ 589
PL S +
Sbjct: 152 PLVISNE 158
Score = 49.2 bits (112), Expect = 1e-04
Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 2/103 (1%)
Frame = +3
Query: 549 LKRFPSFPWVVADKVQEINKTKQAVIFLRRL-KAWSDILXGVQVS-ASSCW*G*NAQPSS 722
+ P P V+++++Q INKT AV F + K + + ++ S A C G
Sbjct: 145 INNVPELPLVISNEIQNINKTSTAVEFFKNFGKGLEEEMKRIESSIAIRCGKGKMRNRRR 204
Query: 723 YPAXGPLIIFXXDQGLTRAFRNIPGXXXXXXXXXXXXXXAXGG 851
A GPL+++ D G+ +A RNI G A GG
Sbjct: 205 VCAVGPLVVYAEDNGIVKAMRNIKGVDTCSVERLNLLRLAPGG 247
>UniRef50_Q4UES5 Cluster: 60S ribosomal subunit protein L4/L1,
putative; n=2; Theileria|Rep: 60S ribosomal subunit
protein L4/L1, putative - Theileria annulata
Length = 426
Score = 110 bits (264), Expect = 5e-23
Identities = 51/88 (57%), Positives = 67/88 (76%)
Frame = +1
Query: 121 VARPLLSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQ 300
V RP++SV+S +E G+ +P VF P+R DLV+ VH +MSKN RQ Y +S+ +G+Q
Sbjct: 2 VHRPVVSVFSVSTEKRMGSTI-MPRVFSTPLRSDLVHYVHTNMSKNKRQAYAISRMSGYQ 60
Query: 301 TSAESWGTGRAVARIPRVRGGGTHRSGQ 384
TSA SWGTGRA++R PRV+GGGTHRSGQ
Sbjct: 61 TSARSWGTGRALSRTPRVKGGGTHRSGQ 88
Score = 54.4 bits (125), Expect = 4e-06
Identities = 23/62 (37%), Positives = 28/62 (45%)
Frame = +2
Query: 389 AFGNMCRGGRMFAPTKPWRRWHHXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPEL 568
A+ N CR G MFAPT+ WR WH +RGH +E +PEL
Sbjct: 90 AYANFCRAGGMFAPTRTWRHWHRKINLKEKRLALAVSVAATASVPLVMSRGHRVESVPEL 149
Query: 569 PL 574
PL
Sbjct: 150 PL 151
>UniRef50_Q4FXU6 Cluster: Ribosomal protein L1a, putative; n=1;
Leishmania major strain Friedlin|Rep: Ribosomal protein
L1a, putative - Leishmania major strain Friedlin
Length = 432
Score = 109 bits (263), Expect = 7e-23
Identities = 54/88 (61%), Positives = 64/88 (72%)
Frame = +1
Query: 124 ARPLLSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQT 303
ARP +SVYS S++V G PLP VF APIR D+V VH +M+KNSRQ Y V++ +G
Sbjct: 3 ARPSVSVYSASSDSVVGTC-PLPAVFTAPIRSDIVKFVHTNMAKNSRQAYAVNRLSGMNH 61
Query: 304 SAESWGTGRAVARIPRVRGGGTHRSGQG 387
SA SWGTGRAVARIPR+ GGGT SG G
Sbjct: 62 SAHSWGTGRAVARIPRISGGGTSTSGAG 89
Score = 60.1 bits (139), Expect = 7e-08
Identities = 28/62 (45%), Positives = 32/62 (51%)
Frame = +2
Query: 389 AFGNMCRGGRMFAPTKPWRRWHHXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPEL 568
AFGNMCRGGRMFAPTK +RRWH +RGH I +PE+
Sbjct: 90 AFGNMCRGGRMFAPTKIFRRWHRKINLHQKRFAVVSALAASSVPSLVMSRGHQIGNVPEV 149
Query: 569 PL 574
PL
Sbjct: 150 PL 151
Score = 41.1 bits (92), Expect = 0.035
Identities = 29/97 (29%), Positives = 40/97 (41%)
Frame = +3
Query: 561 PSFPWVVADKVQEINKTKQAVIFLRRLKAWSDILXGVQVSASSCW*G*NAQPSSYPAXGP 740
P P VV D +Q KTK+A+ FL+ + A D+ G GP
Sbjct: 147 PEVPLVVEDSIQGYEKTKEAMAFLKAIAAIDDVNRVNDSREIRAGRGKMRNRRYVARRGP 206
Query: 741 LIIFXXDQGLTRAFRNIPGXXXXXXXXXXXXXXAXGG 851
+++ ++G TRAFRNI G A GG
Sbjct: 207 MLVMPNNKG-TRAFRNIFGLDLANVSALTLLHLAPGG 242
>UniRef50_Q3SEA6 Cluster: Ribosomal protein L4, putative; n=2;
Oligohymenophorea|Rep: Ribosomal protein L4, putative -
Paramecium tetraurelia
Length = 406
Score = 108 bits (260), Expect = 2e-22
Identities = 53/86 (61%), Positives = 64/86 (74%), Gaps = 1/86 (1%)
Frame = +1
Query: 130 PLLSVYSEKSET-VQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTS 306
PL+SV+S T V PLP VF+ PIRPD+V+ VH +++KN RQ + V+ +AG Q S
Sbjct: 5 PLVSVFSADDSTKVTAKHIPLPAVFQTPIRPDIVSFVHTNIAKNRRQAHAVNPQAGMQHS 64
Query: 307 AESWGTGRAVARIPRVRGGGTHRSGQ 384
AESWGTGRAVARIPRV G GTHRSGQ
Sbjct: 65 AESWGTGRAVARIPRVSGSGTHRSGQ 90
Score = 52.4 bits (120), Expect = 1e-05
Identities = 24/62 (38%), Positives = 28/62 (45%)
Frame = +2
Query: 389 AFGNMCRGGRMFAPTKPWRRWHHXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPEL 568
AFGN CR GRM P K WRRWH ARGH I ++P++
Sbjct: 92 AFGNQCRKGRMSLPIKVWRRWHRRVNIKQKRHAAATAVAATGIVPLVLARGHRISQVPQI 151
Query: 569 PL 574
PL
Sbjct: 152 PL 153
Score = 47.2 bits (107), Expect = 5e-04
Identities = 28/102 (27%), Positives = 42/102 (41%), Gaps = 1/102 (0%)
Frame = +3
Query: 549 LKRFPSFPWVVADKVQEINKTKQAVIFLRRLKAWSDILXGVQVSASSCW*G*NAQPSSYP 728
+ + P P VV DK++ KT A+ FL+R A+ D+ V
Sbjct: 145 ISQVPQIPLVVEDKIESYEKTTDALNFLKRFGAFEDVQKVVSTKVVRAGISKQRGKKYRV 204
Query: 729 AXGPLIIFXXDQG-LTRAFRNIPGXXXXXXXXXXXXXXAXGG 851
GPL+++ + L +AFRN+PG A GG
Sbjct: 205 RKGPLVVYFNENAKLLKAFRNVPGVEVVNVTRLNLLQLAPGG 246
>UniRef50_Q4XUM2 Cluster: 60S ribosomal subunit protein L4/L1,
putative; n=5; Plasmodium|Rep: 60S ribosomal subunit
protein L4/L1, putative - Plasmodium chabaudi
Length = 411
Score = 107 bits (256), Expect = 5e-22
Identities = 51/90 (56%), Positives = 64/90 (71%)
Frame = +1
Query: 115 LSVARPLLSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 294
++ RPL +VY + V G + +P VF+ PIR DL+ + +MSKN R PY V AG
Sbjct: 1 MATIRPLANVYGINGKKVVGEVE-IPVVFQTPIRHDLIEYIFSNMSKNIRHPYAVKLGAG 59
Query: 295 HQTSAESWGTGRAVARIPRVRGGGTHRSGQ 384
++TSAESWGTGRAVARIPRV GGGTHR+GQ
Sbjct: 60 YETSAESWGTGRAVARIPRVPGGGTHRAGQ 89
Score = 52.8 bits (121), Expect = 1e-05
Identities = 27/65 (41%), Positives = 29/65 (44%)
Frame = +2
Query: 389 AFGNMCRGGRMFAPTKPWRRWHHXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPEL 568
AFGNMCRGG MF PTK WRRW ARGH I + E+
Sbjct: 91 AFGNMCRGGGMFNPTKIWRRWGRKINLKEKRYAVCSSIAASGITSLVLARGHRISNLKEV 150
Query: 569 PLGCS 583
PL S
Sbjct: 151 PLVAS 155
Score = 41.9 bits (94), Expect = 0.020
Identities = 28/94 (29%), Positives = 42/94 (44%)
Frame = +3
Query: 570 PWVVADKVQEINKTKQAVIFLRRLKAWSDILXGVQVSASSCW*G*NAQPSSYPAXGPLII 749
P V ++ ++ + KTK A+ FL L ++ ++ G + GPLII
Sbjct: 151 PLVASNDIESMQKTKDALKFLISLGLRDEVNRLIKSXKLRARXGKMRNRKYKISNGPLII 210
Query: 750 FXXDQGLTRAFRNIPGXXXXXXXXXXXXXXAXGG 851
+ D G+ +AFRNIPG A GG
Sbjct: 211 YSXDSGIKKAFRNIPGVDLCNVTKLNLLKLAPGG 244
>UniRef50_A7AUF0 Cluster: Ribosomal protein RPL4A; n=1; Babesia
bovis|Rep: Ribosomal protein RPL4A - Babesia bovis
Length = 360
Score = 107 bits (256), Expect = 5e-22
Identities = 52/86 (60%), Positives = 64/86 (74%)
Frame = +1
Query: 127 RPLLSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTS 306
RP +SV++ GA +P VF AP+R DLV VH +MSKN RQ Y VSK +G+QTS
Sbjct: 4 RPEVSVHNATDGERVGATL-MPKVFSAPLRLDLVRIVHTNMSKNRRQAYAVSKMSGYQTS 62
Query: 307 AESWGTGRAVARIPRVRGGGTHRSGQ 384
A SWGTGRA+AR+PRV+GGGTHR+GQ
Sbjct: 63 ARSWGTGRAMARVPRVKGGGTHRAGQ 88
Score = 48.8 bits (111), Expect = 2e-04
Identities = 21/62 (33%), Positives = 28/62 (45%)
Frame = +2
Query: 389 AFGNMCRGGRMFAPTKPWRRWHHXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPEL 568
A+ N CR G M+APT+ WRRWH +RGH IE + E+
Sbjct: 90 AYANFCRAGGMYAPTRVWRRWHRKVNLKEKRQALASALAATAVVPVVMSRGHRIEALREV 149
Query: 569 PL 574
P+
Sbjct: 150 PM 151
Score = 34.3 bits (75), Expect = 4.0
Identities = 29/78 (37%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Frame = +3
Query: 570 PWVVADKVQEINKTKQAVIFLRRLKAWSDILXGVQVSASSCW*G*NAQPSSYPAXGPLII 749
P VV D +++INKTK AV L + ++ L + G +P GPLII
Sbjct: 150 PMVVDDAIEQINKTKDAVKLLETIGLGAE-LKRIDKVTGRARDGRKKRP-----VGPLII 203
Query: 750 FXXD--QGLTRAFRNIPG 797
+G RAFRNIPG
Sbjct: 204 LRATAVEG-KRAFRNIPG 220
>UniRef50_UPI0000499FAF Cluster: 60S ribosomal protein L4; n=5;
Entamoeba histolytica HM-1:IMSS|Rep: 60S ribosomal
protein L4 - Entamoeba histolytica HM-1:IMSS
Length = 431
Score = 92.7 bits (220), Expect = 1e-17
Identities = 46/88 (52%), Positives = 61/88 (69%)
Frame = +1
Query: 124 ARPLLSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQT 303
+RP +++Y + + LP VF APIR D+V+ V+ + SKN+RQP VS +AG Q
Sbjct: 3 SRPFVTIYDGITGEAEKTQVRLPAVFLAPIRGDVVHFVYRNQSKNTRQPEGVSTKAGKQH 62
Query: 304 SAESWGTGRAVARIPRVRGGGTHRSGQG 387
SA SWGTGRAVARIPR+ G G+ R+GQG
Sbjct: 63 SAISWGTGRAVARIPRISGSGSGRNGQG 90
Score = 47.6 bits (108), Expect = 4e-04
Identities = 29/81 (35%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Frame = +3
Query: 561 PSFPWVVADK-VQEINKTKQAVIFLRRLKAWSDILXGVQVSASSCW*G*NAQPSSYPAXG 737
P P VV K + I KTKQAV L+++ A+SD+L + G G
Sbjct: 148 PQIPLVVNSKSISVIKKTKQAVYLLKKINAYSDVLKVIASKTVRAGQGKMRGRKIKERKG 207
Query: 738 PLIIFXXDQ-GLTRAFRNIPG 797
PL+++ D +AFRNIPG
Sbjct: 208 PLVVYGNDDLQAVKAFRNIPG 228
Score = 43.6 bits (98), Expect = 0.007
Identities = 22/68 (32%), Positives = 30/68 (44%)
Frame = +2
Query: 389 AFGNMCRGGRMFAPTKPWRRWHHXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPEL 568
AFGNM R G MF+P K +R+W ARGH I +P++
Sbjct: 91 AFGNMTRKGHMFSPLKNFRKWQRKTPKQMRRFAVASCIAASAVPALVSARGHHIAGVPQI 150
Query: 569 PLGCSRQS 592
PL + +S
Sbjct: 151 PLVVNSKS 158
>UniRef50_Q8SRC2 Cluster: 60S RIBOSOMAL PROTEIN L4; n=1;
Encephalitozoon cuniculi|Rep: 60S RIBOSOMAL PROTEIN L4 -
Encephalitozoon cuniculi
Length = 335
Score = 92.7 bits (220), Expect = 1e-17
Identities = 43/67 (64%), Positives = 49/67 (73%)
Frame = +1
Query: 187 LPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGG 366
LP VF PIR DLV + +RQPY VSK AG Q SAESWGTGRA+AR+PRV+GGG
Sbjct: 21 LPEVFSVPIRQDLVLKTYSLYRMKTRQPYAVSKNAGMQHSAESWGTGRAIARVPRVKGGG 80
Query: 367 THRSGQG 387
T R+GQG
Sbjct: 81 TRRAGQG 87
Score = 39.1 bits (87), Expect = 0.14
Identities = 21/62 (33%), Positives = 24/62 (38%)
Frame = +2
Query: 389 AFGNMCRGGRMFAPTKPWRRWHHXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPEL 568
AF N CR GRM PTK RRW +ARGH I + L
Sbjct: 88 AFANFCRKGRMAHPTKTHRRWARKVVENTKKIAEAMAVAASAQASLVEARGHRISDVKML 147
Query: 569 PL 574
P+
Sbjct: 148 PI 149
>UniRef50_Q98S44 Cluster: 60s ribosomal protein L1; n=2;
Cryptomonadaceae|Rep: 60s ribosomal protein L1 -
Guillardia theta (Cryptomonas phi)
Length = 255
Score = 90.6 bits (215), Expect = 4e-17
Identities = 43/69 (62%), Positives = 50/69 (72%)
Frame = +1
Query: 187 LPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGG 366
+P VF + IR D+V VH +M KN RQ Y VS AG TSA SWGTGRAV+R+PRV G G
Sbjct: 19 IPKVFFSKIRVDIVRFVHKNMCKNKRQVYAVSSTAGMGTSAVSWGTGRAVSRVPRVPGSG 78
Query: 367 THRSGQGCL 393
THRSGQG +
Sbjct: 79 THRSGQGAI 87
Score = 49.2 bits (112), Expect = 1e-04
Identities = 21/61 (34%), Positives = 28/61 (45%)
Frame = +2
Query: 389 AFGNMCRGGRMFAPTKPWRRWHHXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPEL 568
A N CRGGR+F PT WR+WHH +RG+ ++ IPE+
Sbjct: 86 AIANFCRGGRIFNPTTIWRKWHHKINKNQRKSAIFSAIASSSIVSIIVSRGYRVKTIPEI 145
Query: 569 P 571
P
Sbjct: 146 P 146
>UniRef50_Q5MGK5 Cluster: Ribosomal protein 23; n=2;
Endopterygota|Rep: Ribosomal protein 23 - Lonomia
obliqua (Moth)
Length = 274
Score = 90.2 bits (214), Expect = 6e-17
Identities = 48/95 (50%), Positives = 55/95 (57%)
Frame = +3
Query: 570 PWVVADKVQEINKTKQAVIFLRRLKAWSDILXGVQVSASSCW*G*NAQPSSYPAXGPLII 749
P VV+DK+QEINKTKQAVIFLRR+KAWSD+L + G GPLII
Sbjct: 16 PLVVSDKIQEINKTKQAVIFLRRIKAWSDVLKVYKSQRLRAGKGKMRNRRRLHRKGPLII 75
Query: 750 FXXDQGLTRAFRNIPGXXXXXXXXXXXXXXAXGGH 854
+ DQGLTR+FRNIPG A GGH
Sbjct: 76 YNKDQGLTRSFRNIPGVDMVNVNKLNLLHLAPGGH 110
>UniRef50_Q1KYM6 Cluster: RPL4; n=1; Streblomastix strix|Rep: RPL4 -
Streblomastix strix
Length = 492
Score = 88.6 bits (210), Expect = 2e-16
Identities = 43/84 (51%), Positives = 58/84 (69%)
Frame = +1
Query: 133 LLSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAE 312
L +VY+ + A P + +PIRPD+V+ VH++++KN RQP+ AGHQ SAE
Sbjct: 7 LTTVYNTDGKARDTTAVPSVIRY-SPIRPDVVHFVHMNLAKNERQPFGRYYLAGHQHSAE 65
Query: 313 SWGTGRAVARIPRVRGGGTHRSGQ 384
SWGTGRAVAR+PR+ G GT R+GQ
Sbjct: 66 SWGTGRAVARVPRISGSGTSRNGQ 89
Score = 52.4 bits (120), Expect = 1e-05
Identities = 24/62 (38%), Positives = 28/62 (45%)
Frame = +2
Query: 389 AFGNMCRGGRMFAPTKPWRRWHHXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPEL 568
AF N RGG M++P K WRRWH ARGH I+ +PEL
Sbjct: 91 AFANSARGGHMYSPLKVWRRWHRMVNVTQRRFAMCSAIAASSNPSLVLARGHKIDNVPEL 150
Query: 569 PL 574
PL
Sbjct: 151 PL 152
Score = 52.0 bits (119), Expect = 2e-05
Identities = 34/98 (34%), Positives = 43/98 (43%)
Frame = +3
Query: 561 PSFPWVVADKVQEINKTKQAVIFLRRLKAWSDILXGVQVSASSCW*G*NAQPSSYPAXGP 740
P P VV+D V++I KTK+AV L LKA D+ + G G
Sbjct: 148 PELPLVVSDDVEQIKKTKEAVKVLAALKASDDVKHSAESKRIRVGSGKARNRRYTQRRGV 207
Query: 741 LIIFXXDQGLTRAFRNIPGXXXXXXXXXXXXXXAXGGH 854
LI+ ++GL AFRNI G A GGH
Sbjct: 208 LIVHDQNEGLANAFRNISGVDISNVXRLNIRDLAPGGH 245
>UniRef50_A2E1Z6 Cluster: Ribosomal protein, putative; n=3;
Trichomonas vaginalis G3|Rep: Ribosomal protein,
putative - Trichomonas vaginalis G3
Length = 370
Score = 79.8 bits (188), Expect = 8e-14
Identities = 38/85 (44%), Positives = 59/85 (69%)
Frame = +1
Query: 133 LLSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAE 312
+L+ +K+ T++ LP VF PIR ++V +V+V+++KN++QP+ AG + SA
Sbjct: 8 VLTQEGQKASTIE-----LPKVFDTPIRAEVVKEVYVNLAKNAQQPHANDPMAGKKVSAI 62
Query: 313 SWGTGRAVARIPRVRGGGTHRSGQG 387
SWGTGRA A +PRV G G++R+GQG
Sbjct: 63 SWGTGRAKACVPRVNGSGSNRNGQG 87
Score = 54.4 bits (125), Expect = 4e-06
Identities = 28/76 (36%), Positives = 43/76 (56%)
Frame = +3
Query: 570 PWVVADKVQEINKTKQAVIFLRRLKAWSDILXGVQVSASSCW*G*NAQPSSYPAXGPLII 749
P VV D VQEI +T+ AV L+++ + D+ + S G + + GPL+I
Sbjct: 148 PIVVVDAVQEIKRTRDAVELLKKVGVYGDVQRVLDGSVHRSSKGKFRRAAYKTKKGPLVI 207
Query: 750 FXXDQGLTRAFRNIPG 797
+ D+G+ +AFRNIPG
Sbjct: 208 YNEDKGIVKAFRNIPG 223
Score = 39.1 bits (87), Expect = 0.14
Identities = 18/62 (29%), Positives = 25/62 (40%)
Frame = +2
Query: 389 AFGNMCRGGRMFAPTKPWRRWHHXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPEL 568
A+ N CRGG F P RRW QARGH++ ++ E+
Sbjct: 88 AYANFCRGGHRFNPPTLLRRWFRPVPSRQRKFAIASAIAATAVVPLVQARGHVLGEVKEV 147
Query: 569 PL 574
P+
Sbjct: 148 PI 149
>UniRef50_Q7R0P2 Cluster: GLP_79_45017_44067; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_79_45017_44067 - Giardia lamblia
ATCC 50803
Length = 316
Score = 78.2 bits (184), Expect = 3e-13
Identities = 36/65 (55%), Positives = 43/65 (66%)
Frame = +1
Query: 169 QGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIP 348
Q A P P VF P+RPD++N VH + K R PY VS+ AG Q +A SWG GRAVAR+P
Sbjct: 14 QVAELPRPKVFNVPLRPDIINFVHTQLRKCLRTPYAVSRYAGVQCTAHSWGPGRAVARLP 73
Query: 349 RVRGG 363
R GG
Sbjct: 74 RKHGG 78
Score = 35.5 bits (78), Expect = 1.7
Identities = 19/62 (30%), Positives = 23/62 (37%)
Frame = +2
Query: 389 AFGNMCRGGRMFAPTKPWRRWHHXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPEL 568
A+ N RGG M PT RRW +ARGH I +P +
Sbjct: 81 AYANFARGGHMAHPTTVIRRWCRKVNLNQRRYAVASALAASANAALVEARGHRIADVPSI 140
Query: 569 PL 574
PL
Sbjct: 141 PL 142
Score = 33.1 bits (72), Expect = 9.3
Identities = 14/22 (63%), Positives = 17/22 (77%)
Frame = +1
Query: 676 SQRLRAGKGKMRNRRRIQRXDP 741
S+ +RAG+GKMRNRR I R P
Sbjct: 174 SRHIRAGRGKMRNRRYITRKGP 195
>UniRef50_UPI00005A2ACC Cluster: PREDICTED: similar to ribosomal
protein L4; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to ribosomal protein L4 - Canis familiaris
Length = 248
Score = 74.5 bits (175), Expect = 3e-12
Identities = 33/49 (67%), Positives = 39/49 (79%)
Frame = +1
Query: 220 DLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGG 366
D+VN VH ++ KN QPY VS+ AG+QTSAESWGTGRA +PRVRGGG
Sbjct: 25 DVVNFVHSNLHKNDSQPYAVSESAGYQTSAESWGTGRARGPMPRVRGGG 73
Score = 42.3 bits (95), Expect = 0.015
Identities = 19/22 (86%), Positives = 20/22 (90%)
Frame = +1
Query: 667 VYKSQRLRAGKGKMRNRRRIQR 732
VY SQR+RAGKGKMRNRR IQR
Sbjct: 124 VYASQRMRAGKGKMRNRRPIQR 145
Score = 35.1 bits (77), Expect = 2.3
Identities = 20/64 (31%), Positives = 29/64 (45%)
Frame = +3
Query: 588 KVQEINKTKQAVIFLRRLKAWSDILXGVQVSASSCW*G*NAQPSSYPAXGPLIIFXXDQG 767
KV+ KTK+ V+ L++LKAW+DI G G II+ D G
Sbjct: 98 KVEGYKKTKEEVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRPIQRRGSCIIYNEDNG 157
Query: 768 LTRA 779
+ +A
Sbjct: 158 IIKA 161
>UniRef50_Q0U8Q3 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 349
Score = 71.7 bits (168), Expect = 2e-11
Identities = 31/44 (70%), Positives = 37/44 (84%)
Frame = +1
Query: 253 KNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQ 384
++++ V +AGHQTSAESWGTGRAVARIPRV GGGTHR+GQ
Sbjct: 22 ESTKDTLTVPNKAGHQTSAESWGTGRAVARIPRVSGGGTHRAGQ 65
Score = 62.5 bits (145), Expect = 1e-08
Identities = 29/71 (40%), Positives = 34/71 (47%)
Frame = +2
Query: 389 AFGNMCRGGRMFAPTKPWRRWHHXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPEL 568
AFGNMCR GRMFAPTK WR+WH ARGH + +PE+
Sbjct: 67 AFGNMCRSGRMFAPTKVWRKWHQKINLNQKRFATASALAASGSPALLMARGHNVSTVPEV 126
Query: 569 PLGCSRQSPGD 601
PL S + D
Sbjct: 127 PLVISSTAFAD 137
>UniRef50_Q8TY91 Cluster: 50S ribosomal protein L4P; n=13;
Euryarchaeota|Rep: 50S ribosomal protein L4P -
Methanopyrus kandleri
Length = 260
Score = 66.9 bits (156), Expect = 6e-10
Identities = 32/77 (41%), Positives = 46/77 (59%)
Frame = +1
Query: 130 PLLSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSA 309
P+ ++ E+ +TV+ LP F+ P+R DL+ ++ N RQPY AG +TSA
Sbjct: 4 PVFNLEGEEVDTVE-----LPSFFEEPVRKDLIRRAVLAAQANRRQPYGTDPRAGFRTSA 58
Query: 310 ESWGTGRAVARIPRVRG 360
ESWG G VA +PRV+G
Sbjct: 59 ESWGAGHGVAMVPRVKG 75
Score = 34.3 bits (75), Expect = 4.0
Identities = 22/98 (22%), Positives = 35/98 (35%)
Frame = +3
Query: 561 PSFPWVVADKVQEINKTKQAVIFLRRLKAWSDILXGVQVSASSCW*G*NAQPSSYPAXGP 740
P P VV D+++ +NK ++ F + + W+D+ G
Sbjct: 142 PHLPVVVVDELKSLNKAREVREFFKSVGLWADVERAKSNRRIRAGKGKRRGRRYVKPKSV 201
Query: 741 LIIFXXDQGLTRAFRNIPGXXXXXXXXXXXXXXAXGGH 854
LI+ D+G+ RN PG A G H
Sbjct: 202 LIVVDEDEGIKLGARNHPGVDVVEAMHLGVEHLAPGAH 239
>UniRef50_Q00UB0 Cluster: Ribosomal protein RPL1/RPL2/RL4L4; n=1;
Ostreococcus tauri|Rep: Ribosomal protein
RPL1/RPL2/RL4L4 - Ostreococcus tauri
Length = 404
Score = 56.8 bits (131), Expect = 7e-07
Identities = 44/120 (36%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Frame = +3
Query: 498 PLLLLASQRSFRLEDTLLKRFPSFPWVVADKVQEINKTKQAVIFLRRLKAWSDILXGVQV 677
P LLLA R R+E P P VV D I KT +AV L++L A++DI V+
Sbjct: 137 PSLLLA--RGHRVEGV-----PEVPLVVDDSASSIKKTAKAVELLKQLGAYADI-EKVKA 188
Query: 678 SASSCW*G*NAQPSSY-PAXGPLIIFXXDQGLTRAFRNIPGXXXXXXXXXXXXXXAXGGH 854
S + + Y GPL+++ D G+TRAFRNIPG A GGH
Sbjct: 189 SRNVRSGKGKMRNRRYVQRRGPLVVYSEDNGVTRAFRNIPGVELCSVDRLGLLTLAPGGH 248
Score = 38.3 bits (85), Expect = 0.25
Identities = 26/93 (27%), Positives = 32/93 (34%)
Frame = +2
Query: 296 TKPVPNHGVPDVLLPEFRXXXXXXPIGPVRXAFGNMCRGGRMFAPTKPWRRWHHXXXXXX 475
TKP P+ G P FR P PV +G + WRRWH
Sbjct: 71 TKPRPSPGAPVARSLVFRVCRAVVPTAPV--------KGRSVTCAAVTWRRWHRRVNIKE 122
Query: 476 XXXXXXXXXXXXXXXXXXQARGHIIEKIPELPL 574
ARGH +E +PE+PL
Sbjct: 123 KRYAVCSAIAASAVPSLLLARGHRVEGVPEVPL 155
Score = 35.9 bits (79), Expect = 1.3
Identities = 15/29 (51%), Positives = 21/29 (72%)
Frame = +1
Query: 172 GAAKPLPFVFKAPIRPDLVNDVHVSMSKN 258
GA+ +P VF +PIR D+VN VH ++KN
Sbjct: 15 GASCAMPEVFLSPIRADIVNAVHTGLAKN 43
>UniRef50_Q2NFV7 Cluster: 50S ribosomal protein L4P; n=2;
Euryarchaeota|Rep: 50S ribosomal protein L4P -
Methanosphaera stadtmanae (strain DSM 3091)
Length = 259
Score = 56.0 bits (129), Expect = 1e-06
Identities = 28/75 (37%), Positives = 44/75 (58%)
Frame = +1
Query: 136 LSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAES 315
++VYS K + + LP +F+ RPD++ +SM QP+ AG +T+AES
Sbjct: 4 INVYSLKGDITEEIE--LPEIFEEEYRPDVIKRAVISMQTARIQPWGTDPMAGKRTTAES 61
Query: 316 WGTGRAVARIPRVRG 360
+G+GR A +PRV+G
Sbjct: 62 FGSGRGAAMVPRVKG 76
>UniRef50_Q3LWC7 Cluster: Ribosomal protein L4A; n=1; Bigelowiella
natans|Rep: Ribosomal protein L4A - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 278
Score = 54.4 bits (125), Expect = 4e-06
Identities = 21/35 (60%), Positives = 29/35 (82%)
Frame = +1
Query: 289 AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGCL 393
+G+Q SA+SWG GR +ARIPR++G GT ++GQG L
Sbjct: 59 SGNQVSAKSWGPGRGLARIPRIKGSGTRKAGQGAL 93
>UniRef50_Q9UXA6 Cluster: 50S ribosomal protein L4P; n=3;
Archaea|Rep: 50S ribosomal protein L4P - Sulfolobus
solfataricus
Length = 267
Score = 54.0 bits (124), Expect = 5e-06
Identities = 25/60 (41%), Positives = 36/60 (60%)
Frame = +1
Query: 187 LPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGG 366
LP +F P+R DL+ V ++ +S QP AG +TSAES+G +AR+PRV+ G
Sbjct: 25 LPIIFSFPVRKDLIRRVFIAEFTHSLQPKGRDPNAGKRTSAESFGINLGMARVPRVKNSG 84
>UniRef50_Q9YFM1 Cluster: 50S ribosomal protein L4P; n=8;
Archaea|Rep: 50S ribosomal protein L4P - Aeropyrum
pernix
Length = 272
Score = 51.6 bits (118), Expect = 2e-05
Identities = 28/76 (36%), Positives = 40/76 (52%)
Frame = +1
Query: 133 LLSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAE 312
++ VY E+ LP +F+ P+R DL+ +S QP AG +TSA
Sbjct: 15 IVPVYDERGGEKDSVV--LPQIFRFPVRKDLIRRAFLSEFTARLQPKGRDPMAGKRTSAV 72
Query: 313 SWGTGRAVARIPRVRG 360
S G GR VAR+PR++G
Sbjct: 73 SLGVGRGVARVPRIKG 88
>UniRef50_Q8ZW51 Cluster: 50S ribosomal protein L4P; n=9;
Archaea|Rep: 50S ribosomal protein L4P - Pyrobaculum
aerophilum
Length = 283
Score = 51.2 bits (117), Expect = 3e-05
Identities = 30/75 (40%), Positives = 39/75 (52%)
Frame = +1
Query: 136 LSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAES 315
L VY V PL F+ PIRPDL+ ++S QP V + AG + S ES
Sbjct: 29 LKVYGIDGAYVADIEAPLHFL--EPIRPDLIRRAYLSALSARFQPKGVYEGAGKEHSCES 86
Query: 316 WGTGRAVARIPRVRG 360
+G G +ARIPR +G
Sbjct: 87 FGVGLGIARIPRYKG 101
Score = 33.9 bits (74), Expect = 5.3
Identities = 18/64 (28%), Positives = 24/64 (37%)
Frame = +2
Query: 383 RXAFGNMCRGGRMFAPTKPWRRWHHXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIP 562
R F RGGR P K ++ H ARGH++EK+P
Sbjct: 106 RGCFAPNTRGGRRAHPPKVEKKLHEEINKKEKKLAIRSAIAATAYRSWVAARGHVVEKVP 165
Query: 563 ELPL 574
LP+
Sbjct: 166 SLPV 169
>UniRef50_P12735 Cluster: 50S ribosomal protein L4P; n=1; Haloarcula
marismortui|Rep: 50S ribosomal protein L4P - Haloarcula
marismortui (Halobacterium marismortui)
Length = 246
Score = 48.4 bits (110), Expect = 2e-04
Identities = 23/58 (39%), Positives = 34/58 (58%)
Frame = +1
Query: 187 LPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRG 360
LP VF+ P+R DL+ + N +Q Y + AG +T AES+G+GR A +P+ G
Sbjct: 18 LPDVFETPVRSDLIGKAVRAAQANRKQDYGSDEYAGLRTPAESFGSGRGQAHVPKQDG 75
>UniRef50_O28355 Cluster: 50S ribosomal protein L4P; n=9;
Euryarchaeota|Rep: 50S ribosomal protein L4P -
Archaeoglobus fulgidus
Length = 252
Score = 47.6 bits (108), Expect = 4e-04
Identities = 22/59 (37%), Positives = 33/59 (55%)
Frame = +1
Query: 187 LPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGG 363
LP VF RPD++ +++ + RQPY + +G S E+WG G AR+PR + G
Sbjct: 18 LPEVFAEEFRPDIIKRAVLALQSHRRQPYGPNPLSGVDYSWENWGPGHGYARVPRWKLG 76
>UniRef50_A0RVX5 Cluster: Ribosomal protein L4; n=2;
Thermoprotei|Rep: Ribosomal protein L4 - Cenarchaeum
symbiosum
Length = 271
Score = 45.6 bits (103), Expect = 0.002
Identities = 27/74 (36%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Frame = +1
Query: 169 QGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWG--TGRAVAR 342
+G LP VF P R DL+ + + + QP AG SA+S TG AR
Sbjct: 12 KGKEITLPPVFGTPYRRDLIKKAYTILDTHHFQPKGTHPTAGMDVSADSLNPPTGHGQAR 71
Query: 343 IPRVRGGGTHRSGQ 384
I R++GGG R G+
Sbjct: 72 IARMKGGGGRRRGE 85
>UniRef50_UPI00005A24EF Cluster: PREDICTED: similar to ribosomal
protein L4; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to ribosomal protein L4 - Canis familiaris
Length = 253
Score = 44.0 bits (99), Expect = 0.005
Identities = 18/33 (54%), Positives = 25/33 (75%)
Frame = +3
Query: 561 PSFPWVVADKVQEINKTKQAVIFLRRLKAWSDI 659
P P VV DKV+ KT++AV+ L++LKAW+DI
Sbjct: 11 PELPLVVEDKVEGYKKTEEAVLLLKKLKAWNDI 43
Score = 36.7 bits (81), Expect = 0.76
Identities = 21/42 (50%), Positives = 24/42 (57%)
Frame = +1
Query: 667 VYKSQRLRAGKGKMRNRRRIQRXDPS*SSXXIRV*LALSXTS 792
VY SQR+RAGKGKMRN DP+ S+ V S TS
Sbjct: 46 VYASQRMRAGKGKMRNPLASSAGDPASSTMKTTVSSRPSETS 87
>UniRef50_A7R5H8 Cluster: Chromosome undetermined scaffold_974,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome undetermined scaffold_974, whole genome
shotgun sequence - Vitis vinifera (Grape)
Length = 386
Score = 44.0 bits (99), Expect = 0.005
Identities = 28/103 (27%), Positives = 41/103 (39%), Gaps = 1/103 (0%)
Frame = +3
Query: 549 LKRFPSFPWVVADKVQEINKTKQAVIFLRRLKAWSDILXGVQVSASSCW*G*NAQPSSYP 728
++ P P V+ D + + KT A+ L++ A+ D A G
Sbjct: 7 IESVPELPLVIGDSAESVEKTSAAIDILKQFDAYLDTEKAKDSHAIHPGKGKMRNRRYIS 66
Query: 729 AXGPLIIFXXDQG-LTRAFRNIPGXXXXXXXXXXXXXXAXGGH 854
GPLI++ + L +AFRNIPG A GGH
Sbjct: 67 RKGPLIVYGMEGAKLVKAFRNIPGVEVANVDRLNLLKLAPGGH 109
>UniRef50_Q95YH2 Cluster: Ribosomal protein L4; n=1; Paramecium
caudatum|Rep: Ribosomal protein L4 - Paramecium caudatum
Length = 252
Score = 42.7 bits (96), Expect = 0.012
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 1/92 (1%)
Frame = +3
Query: 579 VADKVQEINKTKQAVIFLRRLKAWSDILXGVQVSASSCW*G*NAQPSSYPAXGPLIIFXX 758
V DK++ KTK A+ FL+R A+ D+ V + GPL+++
Sbjct: 1 VEDKIESYEKTKDALNFLKRFGAFEDVQKVVSTKTIRAGVSKSRGKKYRVRKGPLVVYFN 60
Query: 759 DQG-LTRAFRNIPGXXXXXXXXXXXXXXAXGG 851
+ L +AFRN+PG A GG
Sbjct: 61 ENAKLLKAFRNVPGVEVVNVTRLNLLQLAPGG 92
>UniRef50_Q673S8 Cluster: Ribosomal protein L4; n=3; cellular
organisms|Rep: Ribosomal protein L4 - uncultured marine
group II euryarchaeote DeepAnt-JyKC7
Length = 304
Score = 42.7 bits (96), Expect = 0.012
Identities = 29/77 (37%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
Frame = +1
Query: 160 ETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSK-------EAGHQTSAESW 318
E G A LP VF IR DL+ ++ N RQ Y + +AG + S E W
Sbjct: 41 EAKNGKAVTLPDVFSGEIREDLIRRAVLASRANRRQSYGHREHDGKRKPQAGMKHSVEWW 100
Query: 319 GTGRAVARIPRVRGGGT 369
G GR V+RI R G T
Sbjct: 101 GKGRGVSRIMRKAGQRT 117
>UniRef50_Q9HIR0 Cluster: 50S ribosomal protein L4P; n=4;
Thermoplasmatales|Rep: 50S ribosomal protein L4P -
Thermoplasma acidophilum
Length = 255
Score = 41.5 bits (93), Expect = 0.027
Identities = 20/59 (33%), Positives = 32/59 (54%)
Frame = +1
Query: 187 LPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGG 363
LP VF +R D++ ++S + RQPY S AG + + G ++R+PR+ GG
Sbjct: 20 LPEVFDTEVREDIIRRAFRAISLSMRQPYGSSPLAGMRRVGHTTRPGLGISRMPRIAGG 78
>UniRef50_Q9UFE2 Cluster: Putative uncharacterized protein
DKFZp434E026; n=1; Homo sapiens|Rep: Putative
uncharacterized protein DKFZp434E026 - Homo sapiens
(Human)
Length = 158
Score = 37.5 bits (83), Expect = 0.43
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = -2
Query: 535 SLNERWDASSSNGCCQGRSPLSEVDAMVPAPPGL 434
+L +W S+G C G SPLS A+ PAPPGL
Sbjct: 106 ALPGKWHLLLSSGLCGGNSPLSGNGAVCPAPPGL 139
>UniRef50_UPI00015B4B32 Cluster: PREDICTED: hypothetical protein;
n=1; Nasonia vitripennis|Rep: PREDICTED: hypothetical
protein - Nasonia vitripennis
Length = 1628
Score = 37.1 bits (82), Expect = 0.57
Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -2
Query: 391 GXPDRTYGYHHHGHAEFGQQHVR-YP 317
G PD +G+HHHGH G HV YP
Sbjct: 182 GAPDTRHGHHHHGHHNHGHHHVEPYP 207
>UniRef50_Q4FXU7 Cluster: Putative uncharacterized protein; n=2;
Leishmania|Rep: Putative uncharacterized protein -
Leishmania major strain Friedlin
Length = 534
Score = 37.1 bits (82), Expect = 0.57
Identities = 15/27 (55%), Positives = 17/27 (62%)
Frame = +1
Query: 388 CLR*HVSWWTYVRPHEALAALAPSRQP 468
C+R HV WW +VR E L LAP QP
Sbjct: 142 CVRQHVPWWPHVRADEDLPPLAPQDQP 168
>UniRef50_Q9P6C0 Cluster: Putative uncharacterized protein
B17C10.290; n=3; Sordariales|Rep: Putative
uncharacterized protein B17C10.290 - Neurospora crassa
Length = 468
Score = 35.1 bits (77), Expect = 2.3
Identities = 34/107 (31%), Positives = 45/107 (42%), Gaps = 7/107 (6%)
Frame = -2
Query: 583 ATTQGKLGNLFNNVSSSLNERW-DASSSNGCCQGRSPLSEVDAMVPAPPGLRGGEHTSTT 407
A G +GNLF N SS N+R D SS G S PA S++
Sbjct: 233 AGVMGGIGNLFGNKPSSANQRTPDQSSGFGYSNSGQSGSYSGQTPPATYQQATSGGGSSS 292
Query: 406 THVTEGXPDRTYGYH--HHGHA--EFGQ--QHVRYPMIRHWFGDQPP 284
T+ T G +++ H H G + +G QH Y +H G QPP
Sbjct: 293 TYHTAGPTSQSHQSHQSHSGSSTPSYGAAGQHAPYGQNQH--GQQPP 337
>UniRef50_A0CJI5 Cluster: Chromosome undetermined scaffold_2, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_2,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 285
Score = 34.7 bits (76), Expect = 3.1
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = -2
Query: 679 ETCTPLRISDHALRRLRKMTACLVLLISWTLSATTQGKLGNLFNNVSSSLN 527
E +P +IS H+L L+ + C L+ W S G+LG + + S LN
Sbjct: 230 EETSPEKISKHSLEMLQTIQMCENGLLKWYYSTDINGRLGVILKHYESYLN 280
>UniRef50_Q15911 Cluster: Zinc finger homeobox protein 3; n=25;
Amniota|Rep: Zinc finger homeobox protein 3 - Homo
sapiens (Human)
Length = 3703
Score = 34.3 bits (75), Expect = 4.0
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = +3
Query: 393 SVTCVVVDVCSPPRSPGGAGTIASTSDSGERPWQQ 497
S T + D CSP SPG +G+ + DSG+RP Q+
Sbjct: 2915 SETSSLADPCSP--SPGASGSAGKSGDSGDRPGQK 2947
>UniRef50_P14653 Cluster: Homeobox protein Hox-B1; n=29;
Euteleostomi|Rep: Homeobox protein Hox-B1 - Homo sapiens
(Human)
Length = 301
Score = 34.3 bits (75), Expect = 4.0
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 554 KIPELPLGCSRQSPGDQQDQTGCHLPEAPQGMV 652
++P P GC +++ GD DQ+ C PEA V
Sbjct: 267 RVPPAPPGCPKEAAGDASDQSTCTSPEASPSSV 299
>UniRef50_Q1LUY5 Cluster: Ribosomal protein L4; n=1; Danio
rerio|Rep: Ribosomal protein L4 - Danio rerio
(Zebrafish) (Brachydanio rerio)
Length = 108
Score = 33.9 bits (74), Expect = 5.3
Identities = 18/40 (45%), Positives = 19/40 (47%)
Frame = +3
Query: 393 SVTCVVVDVCSPPRSPGGAGTIASTSDSGERPWQQPLLLL 512
S CVVVD C P+ PG GT S P P LLL
Sbjct: 41 SEICVVVDACLLPQRPGVVGTAGSMLTRSVMPCALPWLLL 80
>UniRef50_A6FXV5 Cluster: Putative uncharacterized protein; n=1;
Plesiocystis pacifica SIR-1|Rep: Putative
uncharacterized protein - Plesiocystis pacifica SIR-1
Length = 342
Score = 33.9 bits (74), Expect = 5.3
Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 2/78 (2%)
Frame = +3
Query: 252 QELEAALLREQGGWSPNQCRIMGYRTCCCPNSA--CPWWWYP*VRSGXPSVTCVVVDVCS 425
+EL AALL G SP C R CC + P W R+G S + V+ D +
Sbjct: 261 EELTAALLAFANGSSPGDCLTASTRPCCASRAGTRSPTPWACRRRTGRGSSSVVIADWSA 320
Query: 426 PPRSPGGAGTIASTSDSG 479
P +G S G
Sbjct: 321 SPTGSRISGPCPPGSPHG 338
>UniRef50_A0H7D7 Cluster: Cytochrome c, class I; n=4;
Comamonadaceae|Rep: Cytochrome c, class I - Comamonas
testosteroni KF-1
Length = 991
Score = 33.9 bits (74), Expect = 5.3
Identities = 21/47 (44%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +1
Query: 277 VSKEAGHQTSAESWGTGRAVARIPRVRGG-GTHRSGQGCLR*HVSWW 414
VS G Q S ES TGR V R+ G GT R CL H+S W
Sbjct: 94 VSHSPGSQESYESIDTGRYVWRMAGASAGSGTARVAAWCLDGHISLW 140
>UniRef50_A7Q400 Cluster: Chromosome chr13 scaffold_48, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr13 scaffold_48, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 131
Score = 33.9 bits (74), Expect = 5.3
Identities = 14/15 (93%), Positives = 14/15 (93%)
Frame = -3
Query: 432 VGANIRPPRHMLPKA 388
VGANI PPRHMLPKA
Sbjct: 107 VGANILPPRHMLPKA 121
>UniRef50_A7F9H5 Cluster: Putative uncharacterized protein; n=1;
Sclerotinia sclerotiorum 1980|Rep: Putative
uncharacterized protein - Sclerotinia sclerotiorum 1980
Length = 1513
Score = 33.9 bits (74), Expect = 5.3
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -2
Query: 514 ASSSNGCCQGRSPLSEVDAMVPAPPGLRGGEHTSTTT 404
A +G +P E+ A +P PPGL G+H S+ T
Sbjct: 232 AGLGDGTAVQMTPEGEIKAEIPKPPGLNDGDHVSSIT 268
>UniRef50_A6SHQ7 Cluster: Putative uncharacterized protein; n=1;
Botryotinia fuckeliana B05.10|Rep: Putative
uncharacterized protein - Botryotinia fuckeliana B05.10
Length = 1512
Score = 33.9 bits (74), Expect = 5.3
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -2
Query: 514 ASSSNGCCQGRSPLSEVDAMVPAPPGLRGGEHTSTTT 404
A +G +P E+ A +P PPGL G+H S+ T
Sbjct: 232 AGLGDGSAVQMTPEGEIKAEIPKPPGLNDGDHVSSIT 268
>UniRef50_Q6TYB9 Cluster: Dauer abnormal formation-2 precursor; n=2;
Caenorhabditis briggsae|Rep: Dauer abnormal formation-2
precursor - Caenorhabditis briggsae
Length = 1807
Score = 33.5 bits (73), Expect = 7.1
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Frame = -2
Query: 484 RSPLSEV-DAMVPAPPGLRGG-EHTSTTTHVTEGXPDRT--YGYHHHGH 350
++ LS V D V P G G ++T T +++G P + GYHHHGH
Sbjct: 1735 KAKLSGVGDHPVVIPTGFNGDPDYTETEPPLSKGSPSKNGNTGYHHHGH 1783
>UniRef50_Q6ZQU4 Cluster: CDNA FLJ46885 fis, clone UTERU3016274;
n=1; Homo sapiens|Rep: CDNA FLJ46885 fis, clone
UTERU3016274 - Homo sapiens (Human)
Length = 410
Score = 33.5 bits (73), Expect = 7.1
Identities = 18/57 (31%), Positives = 24/57 (42%)
Frame = +3
Query: 333 CCPNSACPWWWYP*VRSGXPSVTCVVVDVCSPPRSPGGAGTIASTSDSGERPWQQPL 503
C P+ WW P RSG D+ P++P G G+ R WQ+PL
Sbjct: 356 CFPHGERGWWSVP-TRSGCLQAQLCPADLTGQPQAP-GLGSSTCRHRRKPRAWQEPL 410
>UniRef50_Q68DE3 Cluster: Basic helix-loop-helix domain-containing
protein KIAA2018; n=16; Amniota|Rep: Basic
helix-loop-helix domain-containing protein KIAA2018 -
Homo sapiens (Human)
Length = 2242
Score = 33.5 bits (73), Expect = 7.1
Identities = 27/89 (30%), Positives = 39/89 (43%)
Frame = -2
Query: 550 NNVSSSLNERWDASSSNGCCQGRSPLSEVDAMVPAPPGLRGGEHTSTTTHVTEGXPDRTY 371
N +S+LN + +SSS+G QGR+ V P + T +H T+G +
Sbjct: 1884 NTRNSTLNIPFSSSSSSGDIQGRNTSPNVSVQKSNPMRI-------TESHATKGHMNPPV 1936
Query: 370 GYHHHGHAEFGQQHVRYPMIRHWFGDQPP 284
+ HG A H P + H GDQ P
Sbjct: 1937 TTNMHGVARPALPH---PSVSHGNGDQGP 1962
>UniRef50_A5UPY3 Cluster: HAD-superfamily hydrolase, subfamily IA,
variant 1; n=2; Roseiflexus|Rep: HAD-superfamily
hydrolase, subfamily IA, variant 1 - Roseiflexus sp.
RS-1
Length = 223
Score = 33.1 bits (72), Expect = 9.3
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -2
Query: 196 RTGGA-WLHPAPSHSSLNTPTIKVGLPIDSFRYFSEAIPP 80
R GG WLH A SH P +++GLP+ E +PP
Sbjct: 163 RIGGLRWLHAAQSHFHDVVPAVQMGLPVAWINRKHEPLPP 202
>UniRef50_Q7QNZ3 Cluster: GLP_149_9791_7437; n=2; Giardia lamblia
ATCC 50803|Rep: GLP_149_9791_7437 - Giardia lamblia ATCC
50803
Length = 784
Score = 33.1 bits (72), Expect = 9.3
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Frame = +1
Query: 118 SVARPLLSVYSEKS--ETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEA 291
SVA P VYS+++ T +P P + + P ++ V + + + S+ PY +S+ +
Sbjct: 350 SVASP--PVYSDRAPHSTDFQRLRPAPLLPQTPSSDSNISLVTLPLGQESKDPYSLSRTS 407
Query: 292 GHQTSAESWGTGRAVARIPR 351
Q SA + R A+ PR
Sbjct: 408 LSQNSATTTNEFRVSAKTPR 427
>UniRef50_Q46BU5 Cluster: Transcriptional regulator HTH-type, ArsR
family; n=1; Methanosarcina barkeri str. Fusaro|Rep:
Transcriptional regulator HTH-type, ArsR family -
Methanosarcina barkeri (strain Fusaro / DSM 804)
Length = 115
Score = 33.1 bits (72), Expect = 9.3
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = +3
Query: 528 FRLEDTLLKRFPSFPWVVADKVQEINKTKQAVIFLRRLKA 647
+RL DT+ +FP +++D++++I K + L + KA
Sbjct: 70 YRLNDTIFLKFPFLSMIISDEIEKIGICKDDLALLEKFKA 109
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 869,518,302
Number of Sequences: 1657284
Number of extensions: 18822968
Number of successful extensions: 56630
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 53090
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56462
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 76652910257
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -