Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_C09
         (863 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   134   2e-32
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   133   4e-32
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    29   1.1  
SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|c...    27   4.5  
SPAC1296.03c |sxa2||serine carboxypeptidase Sxa2|Schizosaccharom...    26   6.0  
SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces pom...    26   6.0  
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact...    26   6.0  
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom...    26   7.9  
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po...    26   7.9  

>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  134 bits (323), Expect = 2e-32
 Identities = 62/90 (68%), Positives = 73/90 (81%)
 Frame = +1

Query: 115 LSVARPLLSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 294
           ++ ARP +S+YS K  +V      LPFVFKAPIRPDLV  VH +++KN RQPY VS++AG
Sbjct: 1   MAAARPTVSIYS-KDGSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59

Query: 295 HQTSAESWGTGRAVARIPRVRGGGTHRSGQ 384
           HQTSAESWGTGRA+ARIPRV GGGTHRSGQ
Sbjct: 60  HQTSAESWGTGRALARIPRVGGGGTHRSGQ 89



 Score = 65.3 bits (152), Expect = 1e-11
 Identities = 42/119 (35%), Positives = 54/119 (45%)
 Frame = +3

Query: 498 PLLLLASQRSFRLEDTLLKRFPSFPWVVADKVQEINKTKQAVIFLRRLKAWSDILXGVQV 677
           P LLLA  R  R+E+      P  P VV D VQ   KTK+AV  L+ +KA+ D++     
Sbjct: 134 PSLLLA--RGHRIEE-----IPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVVKVANS 186

Query: 678 SASSCW*G*NAQPSSYPAXGPLIIFXXDQGLTRAFRNIPGXXXXXXXXXXXXXXAXGGH 854
                  G           GPL++F  D G+ +AFRNIPG              A GGH
Sbjct: 187 RKLRAGKGKLRNRRHVQRRGPLVVFNEDAGIVKAFRNIPGVEIVNVRRLNLLQLAPGGH 245



 Score = 64.1 bits (149), Expect = 2e-11
 Identities = 30/62 (48%), Positives = 33/62 (53%)
 Frame = +2

Query: 389 AFGNMCRGGRMFAPTKPWRRWHHXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPEL 568
           AFGNMCR GRMFAPTK WR+WH                          ARGH IE+IPE+
Sbjct: 91  AFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAISSAVAASGVPSLLLARGHRIEEIPEV 150

Query: 569 PL 574
           PL
Sbjct: 151 PL 152


>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  133 bits (321), Expect = 4e-32
 Identities = 61/90 (67%), Positives = 73/90 (81%)
 Frame = +1

Query: 115 LSVARPLLSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 294
           ++ ARP +S+Y+ K  +V      LPFVFKAPIRPDLV  VH +++KN RQPY VS++AG
Sbjct: 1   MAAARPTVSIYN-KDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59

Query: 295 HQTSAESWGTGRAVARIPRVRGGGTHRSGQ 384
           HQTSAESWGTGRA+ARIPRV GGGTHRSGQ
Sbjct: 60  HQTSAESWGTGRALARIPRVGGGGTHRSGQ 89



 Score = 65.7 bits (153), Expect = 8e-12
 Identities = 42/119 (35%), Positives = 54/119 (45%)
 Frame = +3

Query: 498 PLLLLASQRSFRLEDTLLKRFPSFPWVVADKVQEINKTKQAVIFLRRLKAWSDILXGVQV 677
           P LLLA  R  R+E+      P  P VV D VQ   KTK+AV  L+ +KA+ D++     
Sbjct: 134 PSLLLA--RGHRIEE-----IPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVIKVANS 186

Query: 678 SASSCW*G*NAQPSSYPAXGPLIIFXXDQGLTRAFRNIPGXXXXXXXXXXXXXXAXGGH 854
                  G           GPL++F  D G+ +AFRNIPG              A GGH
Sbjct: 187 RKLRAGKGKLRNRRHVQRRGPLVVFNEDTGIVKAFRNIPGVEIVNVRRLNLLQLAPGGH 245



 Score = 64.1 bits (149), Expect = 2e-11
 Identities = 30/62 (48%), Positives = 33/62 (53%)
 Frame = +2

Query: 389 AFGNMCRGGRMFAPTKPWRRWHHXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPEL 568
           AFGNMCR GRMFAPTK WR+WH                          ARGH IE+IPE+
Sbjct: 91  AFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAIASAVAASGVPSLLLARGHRIEEIPEV 150

Query: 569 PL 574
           PL
Sbjct: 151 PL 152


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -1

Query: 176 APCTVSLFSEYTDNKGRATDRLISLL 99
           A C V ++SEYT N G ++  L++L+
Sbjct: 490 ADCVVKIWSEYTKNTGESSPVLVALV 515


>SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +3

Query: 36  VAWRMVFITAISVYFGGIA-SLK*RNESIGSPTFIVGVF 149
           V W +VF+    ++ GG+A  LK   +S+    F+V  F
Sbjct: 343 VGWGLVFVLICVIWGGGLAFQLKYTRKSVAESDFVVTDF 381


>SPAC1296.03c |sxa2||serine carboxypeptidase
           Sxa2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 19/55 (34%), Positives = 27/55 (49%)
 Frame = -2

Query: 568 KLGNLFNNVSSSLNERWDASSSNGCCQGRSPLSEVDAMVPAPPGLRGGEHTSTTT 404
           KLG  FNN SS+++E +     N  CQ  S L+ +       P  R   + ST+T
Sbjct: 253 KLGYYFNNTSSTISEEF--KKRNKECQYDSVLNRLTFPTEQYPIWRPEYNFSTST 305


>SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 332

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = +3

Query: 585 DKVQEINKTKQAVIFLRRLKAWSDILXGVQVSASSCW 695
           D V+   K KQ   FL  + +W D+     +    CW
Sbjct: 81  DAVKSTIKCKQCQSFLTSISSWKDLPSANWMEMLDCW 117


>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
           complex associated protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 710

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 13/28 (46%), Positives = 22/28 (78%)
 Frame = -2

Query: 586 SATTQGKLGNLFNNVSSSLNERWDASSS 503
           SAT+  +L ++F+N+SSS++   DASS+
Sbjct: 670 SATSNSQLSSIFSNLSSSIS---DASSN 694


>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 355

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +3

Query: 189 PVRIQGAHTSGPGQ*CSRFYVQELEAALLREQ 284
           PV +QG HT G      +F  Q L A +L  Q
Sbjct: 29  PVDVQGCHTLGERNDPKKFRFQTLVALMLSSQ 60


>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 949

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +2

Query: 542 HIIEKIPELPLGCSRQSPGDQQDQTGCH 625
           H++EK+ E+ + C R       ++  CH
Sbjct: 264 HLLEKLTEVNVMCDRHMDAISSEELACH 291


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,321,319
Number of Sequences: 5004
Number of extensions: 66086
Number of successful extensions: 173
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)