Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_C09
         (863 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)               134   1e-31
SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)                    29   4.9  
SB_8034| Best HMM Match : Astacin (HMM E-Value=0)                      29   6.5  
SB_49585| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  
SB_13625| Best HMM Match : Reprolysin (HMM E-Value=2.3e-15)            28   8.5  
SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)                   28   8.5  

>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
          Length = 299

 Score =  134 bits (323), Expect = 1e-31
 Identities = 63/88 (71%), Positives = 73/88 (82%)
 Frame = +1

Query: 124 ARPLLSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQT 303
           ARP+++V++E  E+       LP VFKAPIRPDLVN VH +++KN RQPY V+K AGHQT
Sbjct: 2   ARPVITVFNENGESA--GQTTLPAVFKAPIRPDLVNFVHSNIAKNKRQPYAVNKLAGHQT 59

Query: 304 SAESWGTGRAVARIPRVRGGGTHRSGQG 387
           SAESWGTGRAVARIPRVRGGGTHRSGQG
Sbjct: 60  SAESWGTGRAVARIPRVRGGGTHRSGQG 87



 Score = 66.1 bits (154), Expect = 3e-11
 Identities = 31/62 (50%), Positives = 33/62 (53%)
 Frame = +2

Query: 389 AFGNMCRGGRMFAPTKPWRRWHHXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPEL 568
           AFGNMCRGGRMFAPTK WR+WH                          ARGH IEKI E+
Sbjct: 88  AFGNMCRGGRMFAPTKTWRKWHTKVNVQQRRFAVCSALAASALPALIMARGHRIEKIAEV 147

Query: 569 PL 574
           PL
Sbjct: 148 PL 149



 Score = 55.6 bits (128), Expect = 5e-08
 Identities = 29/102 (28%), Positives = 46/102 (45%)
 Frame = +3

Query: 549 LKRFPSFPWVVADKVQEINKTKQAVIFLRRLKAWSDILXGVQVSASSCW*G*NAQPSSYP 728
           +++    P V++D ++ + KT  AV  L+ + A+ D+   +         G      +  
Sbjct: 141 IEKIAEVPLVISDAIESVTKTSAAVKLLKAVNAYEDVEKCIDSKKIRAGKGKMRNRRTVM 200

Query: 729 AXGPLIIFXXDQGLTRAFRNIPGXXXXXXXXXXXXXXAXGGH 854
             GPLII+  DQGL +AFRN+PG                GGH
Sbjct: 201 RKGPLIIYNNDQGLRQAFRNLPGVELQHVDRLNLLKLCPGGH 242


>SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2325

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +1

Query: 220  DLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARI 345
            D+ NDV ++++  +  PY +     H T  E   TG+ +A++
Sbjct: 2034 DVTNDVTINVTDVNEAPYDIRLVPSHVTVKEDIRTGQCIAQV 2075


>SB_8034| Best HMM Match : Astacin (HMM E-Value=0)
          Length = 368

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = -2

Query: 172 PAPSHSSLNTPT-IKVGLPIDSFRYFSEAIPPKYTLIAVIKTIRH 41
           P  S SSL  P+ I+VG  +DS   F+ A+P K+    + K IRH
Sbjct: 63  PLASISSLGYPSWIQVGAILDSQWRFNGAVPTKFKK-EIRKAIRH 106


>SB_49585| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 655

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = -2

Query: 703 YPYQHEDAETCTPLR-ISDHALRRL 632
           +P+ HED   C P R  SDH  +RL
Sbjct: 425 FPWAHEDLPICLPSRGASDHVWKRL 449


>SB_13625| Best HMM Match : Reprolysin (HMM E-Value=2.3e-15)
          Length = 715

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = +1

Query: 214 RPDLVNDVHVSMSKNSRQPYC-VSKEAGHQTSAESWGTGRAV 336
           RP       +SM K  R+PY  + +E GH+    S  T R V
Sbjct: 156 RPGCDTHEKISMEKRKREPYLELIRETGHERQRRSVSTERNV 197


>SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)
          Length = 453

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 13/38 (34%), Positives = 16/38 (42%)
 Frame = -2

Query: 418 TSTTTHVTEGXPDRTYGYHHHGHAEFGQQHVRYPMIRH 305
           T+ TT +T       Y YHHH H      H  +   RH
Sbjct: 292 TTITTAITITTATPPYRYHHHHHHRHHHHHHHHHHQRH 329


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,702,291
Number of Sequences: 59808
Number of extensions: 591425
Number of successful extensions: 1571
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1563
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2467263854
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)