Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_C09
         (863 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...   116   3e-26
U40948-1|AAA81727.1|  730|Caenorhabditis elegans Gliotactin (dro...    30   2.4  
AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical ...    29   5.7  
Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical pr...    28   7.5  
AL132949-31|CAB61110.3|  297|Caenorhabditis elegans Hypothetical...    28   7.5  
AC006831-1|AAF39995.1|  558|Caenorhabditis elegans Hypothetical ...    28   7.5  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score =  116 bits (278), Expect = 3e-26
 Identities = 56/88 (63%), Positives = 67/88 (76%)
 Frame = +1

Query: 124 ARPLLSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQT 303
           ARPL++VY EK E  Q   + LP VF+ PIRPDLV+ +   + +N RQ + V+ +AG Q 
Sbjct: 3   ARPLVTVYDEKYEATQSQIR-LPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAGKQH 61

Query: 304 SAESWGTGRAVARIPRVRGGGTHRSGQG 387
           SAESWGTGRAVARIPRVRGGGTHRSGQG
Sbjct: 62  SAESWGTGRAVARIPRVRGGGTHRSGQG 89



 Score = 62.9 bits (146), Expect = 3e-10
 Identities = 35/95 (36%), Positives = 44/95 (46%)
 Frame = +3

Query: 570 PWVVADKVQEINKTKQAVIFLRRLKAWSDILXGVQVSASSCW*G*NAQPSSYPAXGPLII 749
           P VV+DKV+   KTK+AV+FLRR   W+DI        +    G           GP++I
Sbjct: 150 PLVVSDKVESFRKTKEAVVFLRRSHLWADIEKVYNSKRNRAGKGKLRNRQHKQKLGPVVI 209

Query: 750 FXXDQGLTRAFRNIPGXXXXXXXXXXXXXXAXGGH 854
           +  D    RAFRNIPG              A GGH
Sbjct: 210 YGQDAECARAFRNIPGVDVMNVERLNLLKLAPGGH 244



 Score = 60.5 bits (140), Expect = 2e-09
 Identities = 27/62 (43%), Positives = 33/62 (53%)
 Frame = +2

Query: 389 AFGNMCRGGRMFAPTKPWRRWHHXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPEL 568
           AFGNMCRGG MFAP K +RRWH                         QARGH+I+++ E+
Sbjct: 90  AFGNMCRGGHMFAPLKVFRRWHRNVNIAQKRYAVSSAIAASGIPALLQARGHVIDQVAEV 149

Query: 569 PL 574
           PL
Sbjct: 150 PL 151


>U40948-1|AAA81727.1|  730|Caenorhabditis elegans Gliotactin
           (drosophila neuroligin-like) homolog protein 1 protein.
          Length = 730

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = -2

Query: 445 PPGLRGGEHTSTTTHVTEGXPD--RTYGYHHHGHAEFGQQHVRYPMIRHWF 299
           P GLRG   T T  + +    +  R + YH + + +F      Y   RHW+
Sbjct: 550 PIGLRGINFTDTDRNASRTFSNIIRRFSYHQNPNFQFDGSWAAYEPRRHWY 600


>AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical
           protein W03G1.5 protein.
          Length = 471

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 19/60 (31%), Positives = 23/60 (38%), Gaps = 3/60 (5%)
 Frame = -2

Query: 451 PAPPGLRGGEHTSTTTHVTEGXPDRTYGYHHHGH---AEFGQQHVRYPMIRHWFGDQPPC 281
           P  PG R G H     H  +G     +G+HHH H     F   H  +     W    PPC
Sbjct: 388 PHCPG-RHGHHGPPHHHHHDGRSPSRHGHHHHHHHGCRPFPPHHGHHHFPPFW----PPC 442


>Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical
           protein M02G9.1 protein.
          Length = 909

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -2

Query: 172 PAPSHSSLNTPTIKVGLPIDSFRYFSEAIPPKYT 71
           P  S +S N PTIK+ L I+   YF     PK T
Sbjct: 184 PTTSSTSTNAPTIKITLNIND-AYFDSNCAPKCT 216


>AL132949-31|CAB61110.3|  297|Caenorhabditis elegans Hypothetical
           protein Y53F4B.36 protein.
          Length = 297

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 13/58 (22%), Positives = 25/58 (43%)
 Frame = +1

Query: 109 MSLSVARPLLSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVS 282
           MS++V  P LS        V    + + F++  P    ++ D H+   + +    CV+
Sbjct: 182 MSMAVTSPYLSKLDRLPIVVSACKRAMCFIYDRPTNSIILLDTHMHFKRRAVSVLCVA 239


>AC006831-1|AAF39995.1|  558|Caenorhabditis elegans Hypothetical
           protein ZK121.2 protein.
          Length = 558

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
 Frame = -2

Query: 520 WDASSSNGCCQGRSPLS-EVDAMVPAPPGLRGGEHTSTTTHVTEGXPDRTYGYHHHGHAE 344
           +D S+++  C G+ P+  + ++      G+  G +  +   V  G P     +HHH HA 
Sbjct: 345 FDCSNNSYLCTGKHPMMRKAESFGGMANGISHGCYEQSVPVVC-GTPPSVMVHHHHHHA- 402

Query: 343 FGQQHVRYPMIRHWFGDQ 290
               H++ P   ++ G Q
Sbjct: 403 ----HIQQPPTSNYTGYQ 416


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,145,528
Number of Sequences: 27780
Number of extensions: 420803
Number of successful extensions: 1298
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1286
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2160943708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)