Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_C09
         (863 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    27   0.29 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                24   2.1  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   8.4  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 26.6 bits (56), Expect = 0.29
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 469 EVDAMVPAPPGLRGGEHTSTTTHVT 395
           ++D  +P PP +RGGE T  T   T
Sbjct: 370 DLDEPLPPPPPIRGGEWTFDTLRKT 394


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 11/53 (20%)
 Frame = -2

Query: 460 AMVPAPPGLRGGEHTSTTTHVTEG----XPDR-------TYGYHHHGHAEFGQ 335
           A V A PG  G   TST T +  G     P +        YG H  GHA+ G+
Sbjct: 170 ASVKAEPGSTGTTTTSTGTRLLHGILSQHPQQHGLGVQNGYGRHLPGHAQMGR 222



 Score = 23.8 bits (49), Expect = 2.1
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -2

Query: 424 EHTSTTTHVTEGXPDRTYGYHHHGHAEFGQQHVRY 320
           +H + T   T G P     +HHH H     QH+ Y
Sbjct: 337 QHGNHTMGPTMGPP-----HHHHHHQTQSLQHLHY 366



 Score = 22.2 bits (45), Expect = 6.3
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +3

Query: 423 SPPRSPGGAGT 455
           SPPR PGG  T
Sbjct: 397 SPPRGPGGVPT 407


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 6/16 (37%), Positives = 7/16 (43%)
 Frame = +3

Query: 318 GYRTCCCPNSACPWWW 365
           G+    C N    WWW
Sbjct: 353 GFLQPVCQNEMNKWWW 368


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 232,129
Number of Sequences: 438
Number of extensions: 4946
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27916710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)