Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_C08
(859 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 251 8e-68
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 142 6e-35
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 141 1e-34
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 120 3e-28
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 80 3e-16
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 76 7e-15
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 70 4e-13
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 52 1e-07
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 32 0.12
SPAC637.07 |moe1||translation initiation factor eIF3d Moe1|Schiz... 27 4.5
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 6.0
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 26 6.0
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 26 7.9
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 251 bits (615), Expect = 8e-68
Identities = 116/135 (85%), Positives = 120/135 (88%)
Frame = +1
Query: 244 PAIRXVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVA 423
P +MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVA
Sbjct: 38 PRHHGIMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVA 97
Query: 424 PEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGD 603
PEEHP LLTEAPLNPK+NREKMTQI+FETFN PA YVAIQAVLSLYASGRTTGIVLDSGD
Sbjct: 98 PEEHPCLLTEAPLNPKSNREKMTQIIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGD 157
Query: 604 GVSHTXPHLRGIRTP 648
GV+HT P G P
Sbjct: 158 GVTHTVPIYEGYALP 172
Score = 69.3 bits (162), Expect = 6e-13
Identities = 30/36 (83%), Positives = 34/36 (94%)
Frame = +2
Query: 134 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSNRGK 241
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPS G+
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGR 37
Score = 30.7 bits (66), Expect = 0.28
Identities = 16/39 (41%), Positives = 17/39 (43%)
Frame = +3
Query: 615 HRAPSTRDTHSPHAIXXXXXXXXXXXXYLMKILTERGYS 731
H P PHAI YLMKIL ERGY+
Sbjct: 161 HTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILMERGYT 199
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 142 bits (344), Expect = 6e-35
Identities = 66/131 (50%), Positives = 90/131 (68%), Gaps = 1/131 (0%)
Frame = +1
Query: 259 VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNE-LRVAPEEH 435
VM QKD +VG EAQ+ RG+L ++ PIE GI+ NW DME+IW + + ++ L PEEH
Sbjct: 47 VMPSSIQKDMFVGSEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEH 106
Query: 436 PVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSH 615
P+LLTE PL N+EK+ + +ET N PA+ ++Q VL+LYAS RTTGIVL+ GDG++H
Sbjct: 107 PLLLTEPPLANIRNKEKIAEYFYETLNVPALSFSLQPVLALYASARTTGIVLECGDGLTH 166
Query: 616 TXPHLRGIRTP 648
+ P G P
Sbjct: 167 SVPIYDGFSIP 177
Score = 44.0 bits (99), Expect = 3e-05
Identities = 17/30 (56%), Positives = 23/30 (76%)
Frame = +2
Query: 152 LVVDNGSGMCKAGFAGDDAPRAVFPSNRGK 241
+ +DNGSG KAGFAGDD P+ +FP+ G+
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGR 41
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 141 bits (341), Expect = 1e-34
Identities = 60/115 (52%), Positives = 88/115 (76%)
Frame = +1
Query: 280 KDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP 459
KD VGDEA++ R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE P
Sbjct: 50 KDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPP 109
Query: 460 LNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTXP 624
+NP ANREKM + MFE + +YVAIQAVLSLYA G ++G+V+DSGDGV+H P
Sbjct: 110 MNPVANREKMCETMFERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGDGVTHIVP 164
Score = 38.3 bits (85), Expect = 0.001
Identities = 17/34 (50%), Positives = 23/34 (67%)
Frame = +2
Query: 140 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSNRGK 241
E A +V+DNG+G K G+A D+ PR FPS G+
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGR 35
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 120 bits (289), Expect = 3e-28
Identities = 59/127 (46%), Positives = 78/127 (61%), Gaps = 9/127 (7%)
Frame = +1
Query: 283 DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP 459
D ++G++A K +L YPI HG + NWD ME+ W + + LR PE+H LLTE P
Sbjct: 73 DFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPP 132
Query: 460 LNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSH 615
LNP NRE +IMFE+FN +Y+A+QAVL+L AS + TG V+DSGDGV+H
Sbjct: 133 LNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTH 192
Query: 616 TXPHLRG 636
P G
Sbjct: 193 IIPVAEG 199
Score = 38.3 bits (85), Expect = 0.001
Identities = 14/26 (53%), Positives = 21/26 (80%)
Frame = +2
Query: 152 LVVDNGSGMCKAGFAGDDAPRAVFPS 229
+++DNG+G K G+AG+DAP VFP+
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPT 33
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 80.2 bits (189), Expect = 3e-16
Identities = 41/127 (32%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Frame = +1
Query: 271 MGQKDSYVGDEAQSKRGILTL-KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 447
+ + + VG++ + G ++ + P E +++NWD ME++ +TF +L + EHP+ +
Sbjct: 62 LSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICM 120
Query: 448 TEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR--TTGIVLDSGDGVSHTX 621
TE NP R MT+++FE +N P++ I + S Y + + ++GIVL+ G+ SH
Sbjct: 121 TEPLANPTYVRSTMTELLFELYNAPSVAYGIDGLFSFYHNTKPSSSGIVLNLGNAASHVI 180
Query: 622 PHLRGIR 642
P L G R
Sbjct: 181 PVLNGER 187
Score = 30.7 bits (66), Expect = 0.28
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +2
Query: 152 LVVDNGSGMCKAGFAGDDAPRAVF 223
LV+DNGS +AG+ G+ P+ VF
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVF 50
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 75.8 bits (178), Expect = 7e-15
Identities = 35/92 (38%), Positives = 52/92 (56%)
Frame = +1
Query: 325 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 504
+ +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K + MF
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMF 122
Query: 505 ETFNTPAMYVAIQAVLSLYASGRTTGIVLDSG 600
E+ PA Y+A Q + +ASG+ T ++D G
Sbjct: 123 ESLRCPATYLAKQETCAAFASGKGTACLVDIG 154
Score = 39.5 bits (88), Expect = 6e-04
Identities = 16/35 (45%), Positives = 25/35 (71%)
Frame = +2
Query: 137 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSNRGK 241
+EV+A+V+D GS + GF+G+D P+ V PS G+
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCGE 43
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 70.1 bits (164), Expect = 4e-13
Identities = 36/134 (26%), Positives = 70/134 (52%), Gaps = 2/134 (1%)
Frame = +1
Query: 244 PAIRXVMVGMGQKDSYVGDEAQSKRGI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELR 417
P+ V + ++ YV DE Q I + +K +GI+ +W+ W +L+
Sbjct: 37 PSYYGVRSDVTGRNKYVVDELQIHAPIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQ 96
Query: 418 VAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDS 597
V P E+ +++TE NP++ R+++ + FE + PA Y+ QAV +A+ ++T +++D
Sbjct: 97 VNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAFYLTKQAVCVAFANSKSTALIVDI 156
Query: 598 GDGVSHTXPHLRGI 639
G + P + G+
Sbjct: 157 GSDNASVTPVVDGL 170
Score = 35.9 bits (79), Expect = 0.007
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +2
Query: 137 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSNRG 238
EE+ +LV+D GS + G+AG+++P + PS G
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 51.6 bits (118), Expect = 1e-07
Identities = 32/103 (31%), Positives = 48/103 (46%), Gaps = 4/103 (3%)
Frame = +1
Query: 340 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 507
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 508 TFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTXPHLRG 636
P +A + ++ LYA G G+V+D G + P L G
Sbjct: 172 ECQVPGFTIAYEPLMGLYAIGILHGLVIDIGYEKTDITPILDG 214
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 31.9 bits (69), Expect = 0.12
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = +1
Query: 400 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNTPAM---YVAIQ 543
+Y L E+HP+LLT+ A L P+ + ++ +I ++ NTP + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPAC637.07 |moe1||translation initiation factor eIF3d
Moe1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 567
Score = 26.6 bits (56), Expect = 4.5
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = -2
Query: 648 GSAYPS*MGXGVGDTVAGVQHDTGGTTGR 562
G Y S G G GDTV GG GR
Sbjct: 131 GGRYGSSGGRGAGDTVVSRSSGAGGARGR 159
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 6.0
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +1
Query: 442 LLTEAPLNPKANREKMTQIMFETFN 516
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 26.2 bits (55), Expect = 6.0
Identities = 12/35 (34%), Positives = 14/35 (40%)
Frame = +2
Query: 521 PPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPXP 625
PP P + T PV PV+ A P P P
Sbjct: 367 PPPVMPQPAAAAVTTPVAAPVAAAAAAVPVPPPAP 401
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 25.8 bits (54), Expect = 7.9
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -3
Query: 179 TYRSHCLLPTRQLLRRTS*ISEI 111
TYR H +PT LL T +SEI
Sbjct: 168 TYRDHDAIPTATLLNPTLDVSEI 190
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,299,570
Number of Sequences: 5004
Number of extensions: 70271
Number of successful extensions: 222
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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