Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_C07
         (860 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P03070 Cluster: Large T antigen; n=1510; root|Rep: Larg...    73   7e-12
UniRef50_P03081 Cluster: Small t antigen; n=69; root|Rep: Small ...    34   4.0  
UniRef50_UPI0000498F17 Cluster: beta-galactosidase; n=3; Eukaryo...    33   9.3  

>UniRef50_P03070 Cluster: Large T antigen; n=1510; root|Rep: Large T
           antigen - Simian virus 40 (SV40)
          Length = 708

 Score = 73.3 bits (172), Expect = 7e-12
 Identities = 31/34 (91%), Positives = 31/34 (91%)
 Frame = +2

Query: 446 SQSXGSFQAPQSSQSVHDHNQPYHICXGXTCFKK 547
           SQS GSFQAPQSSQSVHDHNQPYHIC G TCFKK
Sbjct: 665 SQSQGSFQAPQSSQSVHDHNQPYHICRGFTCFKK 698


>UniRef50_P03081 Cluster: Small t antigen; n=69; root|Rep: Small t
           antigen - Simian virus 40 (SV40)
          Length = 174

 Score = 34.3 bits (75), Expect = 4.0
 Identities = 15/23 (65%), Positives = 17/23 (73%)
 Frame = +2

Query: 233 LXXGTLLLWXXIXGQTTYKNLXL 301
           L  GTLLLW  I GQTTY++L L
Sbjct: 152 LCEGTLLLWCDIIGQTTYRDLKL 174


>UniRef50_UPI0000498F17 Cluster: beta-galactosidase; n=3;
           Eukaryota|Rep: beta-galactosidase - Entamoeba
           histolytica HM-1:IMSS
          Length = 86

 Score = 33.1 bits (72), Expect = 9.3
 Identities = 13/16 (81%), Positives = 13/16 (81%)
 Frame = +1

Query: 181 HWPSFNNVVTGKTATL 228
           HWPSF NVVTGKT  L
Sbjct: 5   HWPSFYNVVTGKTLAL 20


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 402,455,412
Number of Sequences: 1657284
Number of extensions: 4011678
Number of successful extensions: 4080
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4080
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 76243001646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)