Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_C06
         (853 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch...    31   0.27 
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   2.6  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    27   4.5  

>SPAC343.17c |||WD repeat protein, human WDR70
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 576

 Score = 30.7 bits (66), Expect = 0.27
 Identities = 15/47 (31%), Positives = 28/47 (59%)
 Frame = +2

Query: 377 LNLTLVRSQDGEESYQLLANDCEGEGSENAVTCVLQTSDTEDRDNQE 517
           +N  + R    +ES+ + + + E E   N+ +  LQ+SD+ED D++E
Sbjct: 21  INALIARFIRPKESFLINSVEKESESKLNSKSTTLQSSDSEDWDSEE 67


>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 547

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 16/59 (27%), Positives = 30/59 (50%)
 Frame = +2

Query: 380 NLTLVRSQDGEESYQLLANDCEGEGSENAVTCVLQTSDTEDRDNQEYVMVDSDNGQGPL 556
           NL   R ++  ES    +++ +   + N  +    TSDTED   ++   V+ ++G+ PL
Sbjct: 39  NLPFHREREKVESNPNSSDEEDLTSTNNTRSSDNTTSDTEDDSGEDSYQVEWESGKDPL 97


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 11/93 (11%)
 Frame = +2

Query: 287  ESLTELSCSGSSKQYMQVIDGDKG--------LVQFDLLNLTLVRSQDG-EESYQLLAND 439
            ++L   SCS   K    + DGDKG         +++D+ +L +     G     QL+A  
Sbjct: 1120 KNLFNFSCSNKIKGEEVLNDGDKGKRRTVLLATLEYDIPSLNICIKIGGLGVMAQLMARH 1179

Query: 440  CEGEGSENAVTCV--LQTSDTEDRDNQEYVMVD 532
             E E     + CV  +  S+ E+ D  E V++D
Sbjct: 1180 LEHEDIIWVIPCVGDVSYSNVEEDDPIEVVIID 1212


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,908,172
Number of Sequences: 5004
Number of extensions: 51842
Number of successful extensions: 136
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)