Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_C06
(853 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g55920.1 68418.m06975 nucleolar protein, putative similar to ... 33 0.24
At1g71020.1 68414.m08197 armadillo/beta-catenin repeat family pr... 30 1.7
At5g60140.1 68418.m07539 transcriptional factor B3 family protei... 30 2.2
At4g22450.1 68417.m03243 hypothetical protein 30 2.2
At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p... 29 3.0
At1g64080.1 68414.m07259 expressed protein identical to hypothet... 29 3.9
At5g63320.1 68418.m07946 expressed protein 29 5.2
At4g21070.1 68417.m03047 BRCT domain-containing protein / zinc f... 29 5.2
At2g25170.1 68415.m03010 chromatin remodeling factor CHD3 (PICKL... 28 6.9
At2g24395.1 68415.m02914 chaperone protein dnaJ-related contains... 28 6.9
At5g16320.1 68418.m01908 expressed protein 28 9.1
>At5g55920.1 68418.m06975 nucleolar protein, putative similar to
SP|P46087 Proliferating-cell nucleolar antigen p120
(Proliferation-associated nucleolar protein p120) {Homo
sapiens}, SP|P40991 Nucleolar protein NOP2
{Saccharomyces cerevisiae}; contains Pfam profile
PF01189: NOL1/NOP2/sun family
Length = 682
Score = 33.1 bits (72), Expect = 0.24
Identities = 38/160 (23%), Positives = 64/160 (40%), Gaps = 4/160 (2%)
Frame = +2
Query: 140 KCAIVAIKPWNESCRIQVTTTKSPRS*QLS--TKMDNYRLLRSPRFDRDRTESLTELSCS 313
K A +I P + T P++ L K N L+ + + E L + +
Sbjct: 10 KAATKSITPPTKQLTKSKTPPMKPQTSMLKKGAKSQNKPPLKKQKKEVVEEEPLEDYEVT 69
Query: 314 GSSKQYMQVIDG-DKGLVQFDLLNLTLVRSQDGEE-SYQLLANDCEGEGSENAVTCVLQT 487
S + +V DG D+ + + + + S DGE S QL ++D E E L+
Sbjct: 70 DDSDEDDEVSDGSDEDDISPAVESEEIDESDDGENGSNQLFSDDEEENDEETLGDDFLEG 129
Query: 488 SDTEDRDNQEYVMVDSDNGQGPLFFLQSALPQVNSQQKKD 607
S ED + D+D+ + A+ + + QKKD
Sbjct: 130 SGDEDEEGSLDADSDADSDDDDIVAKSDAIDRDLAMQKKD 169
>At1g71020.1 68414.m08197 armadillo/beta-catenin repeat family
protein / U-box domain-containing protein contains Pfam
domain, PF00514: Armadillo/beta-catenin-like repeats and
Pfam, PF04564: U-box domain
Length = 628
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/36 (44%), Positives = 23/36 (63%)
Frame = +2
Query: 422 QLLANDCEGEGSENAVTCVLQTSDTEDRDNQEYVMV 529
+LL +D + E ENAVTC+L S E N+E +M+
Sbjct: 390 KLLTSDGDTETQENAVTCILNLSIYE--HNKELIML 423
>At5g60140.1 68418.m07539 transcriptional factor B3 family protein
contains Pfam profile PF02362: B3 DNA binding domain
Length = 328
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +2
Query: 389 LVRSQDGEESYQLLANDCEGEGSENAVTCVLQTSDTEDRDNQEYVMVDSDN 541
L RS + + + +DCE E + VL + D++D DN +Y V+ DN
Sbjct: 115 LKRSSEQSKDIIKVGSDCEEESQASDDVIVLNSDDSDDSDN-DY-SVEDDN 163
>At4g22450.1 68417.m03243 hypothetical protein
Length = 457
Score = 29.9 bits (64), Expect = 2.2
Identities = 25/103 (24%), Positives = 43/103 (41%), Gaps = 9/103 (8%)
Frame = +2
Query: 401 QDGEESYQLLANDCEGEGSENAVTCVLQTSDTEDR--------DNQEYVMVDSDN-GQGP 553
+ GEE + D +G+ ++ +T Q D E R D +++ N G GP
Sbjct: 144 KQGEEKLDSMHQDDDGDSTQIPIT---QDDDGESRQIPLNLDDDEATHILPTQSNVGNGP 200
Query: 554 LFFLQSALPQVNSQQKKDETQVVHVTQKKVPSATEILEKAKAL 682
+ +S + S+ +DE V V + + S +IL L
Sbjct: 201 SYSSKSKSSKKRSRSVQDEQGVAEVIKDSIKSRDKILSHKNQL 243
>At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p80
subunit, putative similar to contains 6 WD-40 repeats
(PF00400); katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 974
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -3
Query: 569 TAGRTTDPDRCHCPP*RTLGYHDLQYRLSVG 477
TAG+ +CH P R+L +H L++ L+ G
Sbjct: 121 TAGKLLHEFKCHEGPIRSLDFHPLEFLLATG 151
>At1g64080.1 68414.m07259 expressed protein identical to
hypothetical protein GB:AAF24565 GI:6692100 from
[Arabidopsis thaliana]
Length = 411
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +2
Query: 440 CEGEGSENAVTCVLQTSDTEDRDNQEYVMVDSDNGQGPLFFLQSALP 580
C E+ T + TS TE D + D ++ +GP F L+ ALP
Sbjct: 32 CRYSAGESIGTTTIVTSVTETEDEE----ADENDDEGPFFDLEFALP 74
>At5g63320.1 68418.m07946 expressed protein
Length = 569
Score = 28.7 bits (61), Expect = 5.2
Identities = 36/151 (23%), Positives = 69/151 (45%), Gaps = 2/151 (1%)
Frame = +2
Query: 224 LSTKMDNYRLLRSPRFDR-DRTESLTELSCSGSSKQYMQVIDGDKGLVQFDLLNLTLVRS 400
+S K +Y R + ++ +R E L + SS+ D D G + +++ + S
Sbjct: 368 VSEKAQDYENQRDEKINQSEREEQLENVLEQESSR------DDDTGEQETEVVGVGKELS 421
Query: 401 QDGEESYQLLANDCEGEGSENAVTCVLQTSDTEDRDNQE-YVMVDSDNGQGPLFFLQSAL 577
D E L + EGE + L + T+D NQE ++ G+ L +
Sbjct: 422 LDKSEGQTLSPHREEGENQLDCGNEELVSQKTQDNGNQEDEKSINKIEGEEQLANVPEQE 481
Query: 578 PQVNSQQKKDETQVVHVTQKKVPSATEILEK 670
+V +++++ ET VV + ++K +E++EK
Sbjct: 482 SRV-TEKEEQETGVVDLGEQK----SEVVEK 507
>At4g21070.1 68417.m03047 BRCT domain-containing protein / zinc
finger (C3HC4-type RING finger) family protein (BRCA1)
contains Pfam profiles PF00533: BRCA1 C Terminus (BRCT)
domain, PF00097: Zinc finger, C3HC4 type (RING finger),
PF01535: PPR repeat; identical to cDNA BRCA1 GI:28372473
Length = 1276
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/51 (23%), Positives = 27/51 (52%)
Frame = +2
Query: 515 EYVMVDSDNGQGPLFFLQSALPQVNSQQKKDETQVVHVTQKKVPSATEILE 667
E+ ++ + P F+L+ NS Q+ + Q++ T VPS +++++
Sbjct: 527 EHPSLNKEGNLSPFFWLRDEDDGENSSQRTESDQLLGTTPVNVPSFSDLMD 577
>At2g25170.1 68415.m03010 chromatin remodeling factor CHD3 (PICKLE)
identical to chromatin remodeling factor CHD3
[Arabidopsis thaliana] GI:6478518
Length = 1384
Score = 28.3 bits (60), Expect = 6.9
Identities = 34/129 (26%), Positives = 53/129 (41%), Gaps = 2/129 (1%)
Frame = +2
Query: 137 FKCAIVAIKPWNESCRIQV--TTTKSPRS*QLSTKMDNYRLLRSPRFDRDRTESLTELSC 310
FK A NE+ ++ +S S S + + L +F+ + E L L
Sbjct: 817 FKVANFEYIDENEAAALEAQRVAAESKSSAGNSDRASYWEELLKDKFELHQAEELNALGK 876
Query: 311 SGSSKQYMQVIDGDKGLVQFDLLNLTLVRSQDGEESYQLLANDCEGEGSENAVTCVLQTS 490
S++ + I+ D DL L V S DG+ESY+ A +GE + V +
Sbjct: 877 RKRSRKQLVSIEED------DLAGLEDV-SSDGDESYE--AESTDGEAAGQGVQTGRRPY 927
Query: 491 DTEDRDNQE 517
+ RDN E
Sbjct: 928 RRKGRDNLE 936
>At2g24395.1 68415.m02914 chaperone protein dnaJ-related contains
Pfam PF00684 : DnaJ central domain (4 repeats)
Length = 132
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +2
Query: 389 LVRSQDGEESYQLLANDCEGEGSENAVTCVLQTSDTEDRDNQEY 520
L +SQ G+++ +L DC G+G C Q ++ + +N+ Y
Sbjct: 53 LDQSQQGDDNAVILCEDCNGKGWLLCDFCKGQKTNVKSENNRIY 96
>At5g16320.1 68418.m01908 expressed protein
Length = 470
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +2
Query: 602 KDETQVVHVTQKKVPSATEILEKAKALQKVKAT 700
KD+ TQ+KV E LEK KAL+K T
Sbjct: 336 KDQNLESEFTQEKVEERVEELEKNKALRKRNTT 368
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,644,356
Number of Sequences: 28952
Number of extensions: 286558
Number of successful extensions: 759
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1980143200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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