Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_C04
         (925 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0A9Z3 Cluster: CheW protein; n=1; Alkalilimnicola ehrl...    38   0.27 
UniRef50_P31369 Cluster: POU domain protein 2; n=30; Eumetazoa|R...    38   0.48 
UniRef50_Q62C71 Cluster: Putative uncharacterized protein; n=2; ...    36   1.1  
UniRef50_A6GFC2 Cluster: Putative uncharacterized protein; n=1; ...    36   1.9  
UniRef50_Q2ILT9 Cluster: Transcriptional regulator, GntR family;...    34   4.5  
UniRef50_A5P159 Cluster: Major facilitator superfamily MFS_1 pre...    34   5.9  
UniRef50_A6GGL4 Cluster: Putative uncharacterized protein; n=1; ...    33   7.8  
UniRef50_Q69TP6 Cluster: Putative uncharacterized protein OSJNBa...    33   7.8  
UniRef50_Q17GH8 Cluster: Putative uncharacterized protein; n=1; ...    33   7.8  

>UniRef50_Q0A9Z3 Cluster: CheW protein; n=1; Alkalilimnicola
           ehrlichei MLHE-1|Rep: CheW protein - Alkalilimnicola
           ehrlichei (strain MLHE-1)
          Length = 290

 Score = 38.3 bits (85), Expect = 0.27
 Identities = 30/85 (35%), Positives = 36/85 (42%), Gaps = 4/85 (4%)
 Frame = -2

Query: 522 GCGRTPSVTCPRC---AARHXERHGALVRGARHGHAVH*RQQVPRADQPLRRPARHDVTD 352
           G G TP    P     AAR  E+ G  VR +     +H  +  P    P   PARH    
Sbjct: 44  GGGETPPAVRPAAEPAAARPAEKGGRPVRESPAPPVIHLPELSPTLPAPEEIPARHTREV 103

Query: 351 SHSAPVFGAAHDPEPEP-RGSAPQP 280
              AP   AA +P  +P R SAP P
Sbjct: 104 VRKAPRVEAAPEPAAKPARTSAPAP 128


>UniRef50_P31369 Cluster: POU domain protein 2; n=30; Eumetazoa|Rep:
           POU domain protein 2 - Drosophila melanogaster (Fruit
           fly)
          Length = 498

 Score = 37.5 bits (83), Expect = 0.48
 Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +1

Query: 106 SPLRLRESSP-PRHMHSPLRQSPSCYDADSLAQSNTVYVPNYPQVE 240
           SPLR    SP PRH  S  R  P+   A+SL  S+ V  PN P ++
Sbjct: 211 SPLRSPSLSPVPRHSKSQQRTPPNSMTANSLGMSSAVMTPNTPSMQ 256


>UniRef50_Q62C71 Cluster: Putative uncharacterized protein; n=2;
           Burkholderia|Rep: Putative uncharacterized protein -
           Burkholderia mallei (Pseudomonas mallei)
          Length = 210

 Score = 36.3 bits (80), Expect = 1.1
 Identities = 33/83 (39%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
 Frame = -2

Query: 516 GRTPSVTCPRCAARHXERHGALVRGARHGHAVH*RQQVPRAD-QPLRRPARHDVTDSHSA 340
           GR P+VT  R A RH  R    V GAR   A       PRA  +P  RPA  D    H+ 
Sbjct: 88  GRIPAVTRSR-ACRHGVRP-MKVSGARRASAAAAYPVAPRAQPRPRSRPA-GDAAVQHAV 144

Query: 339 PVFGAAHDPEPEPRGSA-PQPHQ 274
            V   A       RGSA P PH+
Sbjct: 145 AVARVAAARRRRGRGSAEPMPHE 167


>UniRef50_A6GFC2 Cluster: Putative uncharacterized protein; n=1;
           Plesiocystis pacifica SIR-1|Rep: Putative
           uncharacterized protein - Plesiocystis pacifica SIR-1
          Length = 686

 Score = 35.5 bits (78), Expect = 1.9
 Identities = 20/50 (40%), Positives = 23/50 (46%)
 Frame = -2

Query: 429 HAVH*RQQVPRADQPLRRPARHDVTDSHSAPVFGAAHDPEPEPRGSAPQP 280
           H+ H + Q P   QP+  P   D     SAPV   A  P PEP   AP P
Sbjct: 254 HSAHLQPQSPPPQQPVWAPRPWDPPAPDSAPVAQTAPQPAPEP-APAPSP 302


>UniRef50_Q2ILT9 Cluster: Transcriptional regulator, GntR family;
           n=1; Anaeromyxobacter dehalogenans 2CP-C|Rep:
           Transcriptional regulator, GntR family -
           Anaeromyxobacter dehalogenans (strain 2CP-C)
          Length = 482

 Score = 34.3 bits (75), Expect = 4.5
 Identities = 28/89 (31%), Positives = 35/89 (39%), Gaps = 4/89 (4%)
 Frame = -2

Query: 483 AARHXERHGALVRGARHGHAVH*RQQVPRADQPLRRPARHDVTDSH---SAPVFGAAHDP 313
           A RH E  G +    R G  V  R   P    P RRP+ H  + +    +A +  A  DP
Sbjct: 49  AYRHLEAIGLVEALPRSGFRVRPRLPAPLEQAPTRRPSLHAFSSARAELTAELLAAMADP 108

Query: 312 EPEPRGSA-PQPHQYVCLRVRRATGFDLR 229
              P GS  P    +     RR T   LR
Sbjct: 109 ALVPLGSGWPSADHFPVAAFRRLTSRLLR 137


>UniRef50_A5P159 Cluster: Major facilitator superfamily MFS_1
           precursor; n=8; Alphaproteobacteria|Rep: Major
           facilitator superfamily MFS_1 precursor -
           Methylobacterium sp. 4-46
          Length = 876

 Score = 33.9 bits (74), Expect = 5.9
 Identities = 24/53 (45%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = -2

Query: 399 RADQPLRRPARHDVTDSHSAPVFGAAHDPEPE-PR-GSAPQPHQYVCLRVRRA 247
           RA +PL RPAR D          G  H PEPE PR G  P+P     LR R A
Sbjct: 115 RAGRPLPRPARRDPRPGARDRDRGPGHGPEPEGPRQGRRPRPGG-AALRARGA 166


>UniRef50_A6GGL4 Cluster: Putative uncharacterized protein; n=1;
           Plesiocystis pacifica SIR-1|Rep: Putative
           uncharacterized protein - Plesiocystis pacifica SIR-1
          Length = 316

 Score = 33.5 bits (73), Expect = 7.8
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
 Frame = +2

Query: 203 PIPSTCRTTRRSKPVARRTL---RQTYWCGWGAEPRGSGSGSWAA 328
           P PS      RS+PVARRT+   ++  W  + A PR +   +W A
Sbjct: 179 PKPSAAEPEPRSRPVARRTVCADQRVEWIEFSAPPRKANGQAWDA 223


>UniRef50_Q69TP6 Cluster: Putative uncharacterized protein
           OSJNBa0031P18.29; n=1; Oryza sativa (japonica
           cultivar-group)|Rep: Putative uncharacterized protein
           OSJNBa0031P18.29 - Oryza sativa subsp. japonica (Rice)
          Length = 433

 Score = 33.5 bits (73), Expect = 7.8
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = +2

Query: 188 THWLSPIPSTCRTTRRSKPVARRTLRQTYWCGWGAE-PRGSGSGSWAAPKTGAEW 349
           T W+  +  +   TR   P  R   R  +WC  G+     +G G W+ P +G EW
Sbjct: 170 TAWVG-VDQSGIVTRLEGPGWRSARRCRWWCHRGSVVASAAGGGGWSTPVSGGEW 223


>UniRef50_Q17GH8 Cluster: Putative uncharacterized protein; n=1; Aedes
            aegypti|Rep: Putative uncharacterized protein - Aedes
            aegypti (Yellowfever mosquito)
          Length = 1337

 Score = 33.5 bits (73), Expect = 7.8
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = -2

Query: 414  RQQVPRADQPLRRPARHDVTDSHSAPVFGAAHDPEPEPRGSAPQPHQY 271
            +QQ P+ +Q  +   +  V +    PV     +PEPEPR  +P+P Q+
Sbjct: 1218 QQQPPQQEQQPQEQQQEPVRNPSPPPV---VREPEPEPRQPSPEPQQH 1262


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.316    0.134    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 656,378,129
Number of Sequences: 1657284
Number of extensions: 11377010
Number of successful extensions: 50438
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 45294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50308
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 84851082477
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)