Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_C04
         (925 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    25   0.63 
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    23   4.4  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    23   4.4  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 25.4 bits (53), Expect = 0.63
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 317 ILNPNPAAPRPSRTSTSASGS 255
           I+NP P    PS T+TS S +
Sbjct: 416 IINPQPQITSPSNTNTSTSST 436


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -1

Query: 130 KIHVTSEAIPLLDYWKSCL 74
           KI  TS+A+PL+  + +C+
Sbjct: 263 KIPTTSDAVPLIGTYFNCI 281


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -1

Query: 130 KIHVTSEAIPLLDYWKSCL 74
           KI  TS+A+PL+  + +C+
Sbjct: 263 KIPTTSDAVPLIGTYFNCI 281


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.316    0.134    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,428
Number of Sequences: 336
Number of extensions: 2376
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25858250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)