Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_C04
         (925 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16H5.07c |ppa2||serine/threonine protein phosphatase Ppa2|Sc...    27   4.9  
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    27   4.9  
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ...    26   6.5  
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha...    26   6.5  

>SPBC16H5.07c |ppa2||serine/threonine protein phosphatase
           Ppa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +2

Query: 278 CGWGAEPRGSG 310
           CGWG  PRG+G
Sbjct: 220 CGWGISPRGAG 230


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = -2

Query: 420 H*RQQVPRADQPLRRPARHDVTDSHSAPVFGAAHDPEPEPRGS 292
           H R   PR+D   R P+ H   DSH +     + D +   R S
Sbjct: 116 HRRSYSPRSDYGSRSPSPHSSVDSHQSRSPVRSRDRDRSSRSS 158


>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1147

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = -1

Query: 76  LTETDSAVWSKANWPGAVPS 17
           L  T S VW KAN  GA PS
Sbjct: 167 LLNTSSLVWQKANASGARPS 186


>SPAC57A10.02 |cdr2||GIN4 family protein kinase
           Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +1

Query: 115 RLRESSPPRHMHSPLRQSPSCYDA 186
           RLR  S  R M + L QSP+ YD+
Sbjct: 570 RLRTPSGERSMRADLSQSPASYDS 593


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.134    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,366,975
Number of Sequences: 5004
Number of extensions: 35601
Number of successful extensions: 127
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)