Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_C04
(925 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0929 + 21633179-21633377,21633466-21633809,21633905-21634297 30 2.3
05_06_0276 + 26878732-26879574,26879920-26880387,26880800-268810... 30 3.0
10_07_0133 + 13274190-13274317,13274533-13276371,13277064-132772... 29 3.9
09_04_0749 + 19919367-19920869 29 5.2
06_01_0186 + 1454533-1454710,1455299-1455420,1455508-1455806,145... 29 5.2
05_07_0200 - 28368890-28369021,28369169-28369303,28369918-283699... 29 5.2
04_01_0243 - 3193065-3193436 29 5.2
06_03_0178 + 17594062-17595576 29 6.9
02_02_0299 - 8726024-8726101,8726460-8726534,8726836-8726965,872... 29 6.9
01_07_0022 - 40543912-40544004,40545060-40545229,40545850-405459... 29 6.9
03_01_0588 - 4354195-4355184 28 9.1
01_07_0122 - 41196081-41196205,41197561-41198245,41198961-411993... 28 9.1
>10_08_0929 + 21633179-21633377,21633466-21633809,21633905-21634297
Length = 311
Score = 30.3 bits (65), Expect = 2.3
Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = -2
Query: 330 GAAHDPEPEP-RGSAPQPHQYVC 265
GAA D +P P RG+AP P Q +C
Sbjct: 31 GAADDEQPPPRRGAAPPPQQQLC 53
>05_06_0276 +
26878732-26879574,26879920-26880387,26880800-26881021,
26881153-26881278,26881309-26881573,26881719-26881936
Length = 713
Score = 29.9 bits (64), Expect = 3.0
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = +1
Query: 94 RVKGSPLRLRESSPPRHMHSPLRQSP 171
R +GSP R RE SP SP R+SP
Sbjct: 24 RDRGSPPRRRERSPAARSRSPRRRSP 49
>10_07_0133 +
13274190-13274317,13274533-13276371,13277064-13277253,
13277442-13277657
Length = 790
Score = 29.5 bits (63), Expect = 3.9
Identities = 19/67 (28%), Positives = 28/67 (41%)
Frame = -2
Query: 480 ARHXERHGALVRGARHGHAVH*RQQVPRADQPLRRPARHDVTDSHSAPVFGAAHDPEPEP 301
AR+ ERH +L R R + PRAD P A + + AP + A+
Sbjct: 723 ARYVERHTSLYRALRPWLSD------PRADNPPSTNATESLNERRCAPRYNTANSANSSA 776
Query: 300 RGSAPQP 280
++P P
Sbjct: 777 HAASPTP 783
>09_04_0749 + 19919367-19920869
Length = 500
Score = 29.1 bits (62), Expect = 5.2
Identities = 29/84 (34%), Positives = 34/84 (40%), Gaps = 7/84 (8%)
Frame = -2
Query: 492 PRCAARHXERHGALVR-----GARHGHAVH*RQQVP--RADQPLRRPARHDVTDSHSAPV 334
PR A RH A + + HA R VP AD PLR P D+ P
Sbjct: 127 PRLARRHGAACAAFLTQTCAVDVVYTHARSGRLPVPVGEADGPLRLPGLPVELDAGDVPT 186
Query: 333 FGAAHDPEPEPRGSAPQPHQYVCL 262
F AAHD P A +Q+V L
Sbjct: 187 FLAAHDTH-HPSMRALLMNQFVGL 209
>06_01_0186 +
1454533-1454710,1455299-1455420,1455508-1455806,
1455846-1455933,1456015-1456096,1457130-1457242
Length = 293
Score = 29.1 bits (62), Expect = 5.2
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = -2
Query: 408 QVPRADQPLRRPARHDVTDSHSAPVFGAAHDPEPEPRGSAP 286
QV A QPL+RP D +D AP + + E G P
Sbjct: 42 QVAAAGQPLKRPRPADFSDVPGAPEMAGYYSRDEERPGYRP 82
>05_07_0200 -
28368890-28369021,28369169-28369303,28369918-28369947,
28370019-28370093,28370222-28370333,28370440-28370621,
28370723-28370854,28372193-28373479
Length = 694
Score = 29.1 bits (62), Expect = 5.2
Identities = 15/24 (62%), Positives = 16/24 (66%)
Frame = -3
Query: 308 PNPAAPRPSRTSTSASGSVVPPAS 237
P PAA R SRTST A+ S PAS
Sbjct: 346 PPPAAKRTSRTSTPATTSSSAPAS 369
>04_01_0243 - 3193065-3193436
Length = 123
Score = 29.1 bits (62), Expect = 5.2
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +2
Query: 437 RAPRTSAPWRSXCRAAHRGHVTLGVRPQPGRXYRAM 544
R P T W CR+ + V GV Q R +RA+
Sbjct: 4 RPPGTEVTWAEFCRSFRKAQVPDGVVAQKKREFRAL 39
>06_03_0178 + 17594062-17595576
Length = 504
Score = 28.7 bits (61), Expect = 6.9
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -3
Query: 308 PNPAAPRPSRTSTSASGSVVPPAST 234
P P++P PS S SAS S + A+T
Sbjct: 21 PRPSSPTPSSASASASASALAAAAT 45
>02_02_0299 -
8726024-8726101,8726460-8726534,8726836-8726965,
8727406-8727601,8727894-8727965,8728087-8728159,
8728240-8728344,8728502-8728624,8728730-8728806,
8729064-8729108,8729214-8729433
Length = 397
Score = 28.7 bits (61), Expect = 6.9
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +2
Query: 203 PIPSTCRTTRRSKPVARRTLRQTYWCGWGAEPRGSG 310
P+P C R + P + T GW EPR G
Sbjct: 38 PLPPCCVKARAAAPESEAKCHATVVSGWFTEPRSRG 73
>01_07_0022 -
40543912-40544004,40545060-40545229,40545850-40545971,
40549272-40550909,40553212-40553720
Length = 843
Score = 28.7 bits (61), Expect = 6.9
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -2
Query: 549 TPIALYXRPGCGRTPSVTCPRCAARHXERHG 457
TP+A P C + PRCA + RHG
Sbjct: 93 TPLAAMLLPSCAAAAAAWPPRCAGQVALRHG 123
>03_01_0588 - 4354195-4355184
Length = 329
Score = 28.3 bits (60), Expect = 9.1
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = +2
Query: 224 TTRRSKPVARRTLRQTYWCGWGAEPRG--SGSGSWAAPKTGAE 346
++RR KP R +R+ W W AE R G W T AE
Sbjct: 88 SSRRRKPAQYRGVRRRPWGKWAAEIRDPVKGIRVWLGTFTNAE 130
>01_07_0122 -
41196081-41196205,41197561-41198245,41198961-41199329,
41199405-41199514,41200539-41200833
Length = 527
Score = 28.3 bits (60), Expect = 9.1
Identities = 15/30 (50%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Frame = -2
Query: 366 HDVTDS-HSAPVFGAAHDPEPEPRGSAPQP 280
H DS HSAP H P EPR AP P
Sbjct: 361 HGHEDSRHSAPAQAPVHYPVHEPRYGAPPP 390
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.134 0.425
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,228,076
Number of Sequences: 37544
Number of extensions: 357244
Number of successful extensions: 1718
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1716
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2635816500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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