Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_C04
         (925 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006742-7|ABB51176.1| 1434|Caenorhabditis elegans Ferm domain (...    31   1.5  
AC006742-1|AAF60499.2| 1393|Caenorhabditis elegans Hypothetical ...    31   1.5  
Z73098-1|CAA97330.2|  269|Caenorhabditis elegans Hypothetical pr...    29   6.2  

>AC006742-7|ABB51176.1| 1434|Caenorhabditis elegans Ferm domain
            (protein4.1-ezrin-radixin-moesin) family protein 5
            protein.
          Length = 1434

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 391  VRAGDLLTSVDGVPVTGATHQRAVAL 468
            +R GD+L  V+G+ V G  HQ  VA+
Sbjct: 1289 IRVGDVLLYVNGIAVEGKVHQEVVAM 1314


>AC006742-1|AAF60499.2| 1393|Caenorhabditis elegans Hypothetical
            protein Y38C1AB.4 protein.
          Length = 1393

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 391  VRAGDLLTSVDGVPVTGATHQRAVAL 468
            +R GD+L  V+G+ V G  HQ  VA+
Sbjct: 1248 IRVGDVLLYVNGIAVEGKVHQEVVAM 1273


>Z73098-1|CAA97330.2|  269|Caenorhabditis elegans Hypothetical
           protein T21C9.1 protein.
          Length = 269

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 388 LVRAGDLLTSVDGVPVTGATHQRAV 462
           +VR GD + S DG+ +T  TH  AV
Sbjct: 92  VVRTGDKILSFDGIDMTYKTHDEAV 116


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.316    0.134    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,110,605
Number of Sequences: 27780
Number of extensions: 250710
Number of successful extensions: 1068
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1068
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2370744068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)