Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_C03
(858 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom... 110 2e-25
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac... 38 0.001
SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces ... 33 0.052
SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces pomb... 28 1.5
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy... 28 2.0
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 28 2.0
SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces po... 28 2.0
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc... 27 2.6
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp... 27 2.6
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar... 26 6.0
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|... 26 6.0
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 26 7.9
SPCC320.10 |srp72||signal recognition particle subunit Srp72|Sch... 26 7.9
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 26 7.9
>SPBC713.04c |||U3 snoRNP-associated protein
Utp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 854
Score = 110 bits (265), Expect = 2e-25
Identities = 51/135 (37%), Positives = 79/135 (58%), Gaps = 1/135 (0%)
Frame = +2
Query: 236 DGNCVISPVGNRITIYNLKQNKSNTLSFESHYNYTAVDIAPNGMTLLAVTEKGEAQIISL 415
DG ++SPVGNR+++YNLK N S T FE+H N + + ++P LL+V E+G + +
Sbjct: 25 DGFSILSPVGNRVSVYNLKDNTSYTFPFENHKNISHIALSPTSTLLLSVDEEGRCILCNF 84
Query: 416 TTSVVLHKYKFKQQVNAVKFSPDGKYFAVCCDNTVFVMTAPVHF-TGEYRPFIMKRVFKK 592
VLH + FK V A++FSP+GK+FAV + V P E+ PF++ R +
Sbjct: 85 LRRSVLHYFNFKSPVGAIEFSPNGKFFAVSLGKLIQVWRTPNSLEEREFAPFVLHREYTG 144
Query: 593 ALDEVTCLDWSSCSR 637
D++ + WS+ SR
Sbjct: 145 HFDDIVSISWSADSR 159
Score = 32.3 bits (70), Expect = 0.091
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +3
Query: 654 SKDTTTKIHXVEYLENITMYSLSGHTDKIIGVFFER 761
SKD T ++H V+ +E +L+GH + ++ FF +
Sbjct: 165 SKDLTARLHSVDPIEGFHPCALTGHKNTVVSGFFSK 200
Score = 29.1 bits (62), Expect = 0.84
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = +1
Query: 163 MKFNYKFQNLLGTVYRKGDVLF 228
MK + F NL+GT++ KG+++F
Sbjct: 1 MKTEFGFSNLVGTIFSKGNLVF 22
>SPAC630.14c |tup12||transcriptional corepressor Tup12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 586
Score = 38.3 bits (85), Expect = 0.001
Identities = 26/98 (26%), Positives = 52/98 (53%), Gaps = 2/98 (2%)
Frame = +2
Query: 233 KDGNCVISPVGNR-ITIYNLKQNKSNTLSFESHYNYTAVDIAPNGMTLLAVTEKGEAQII 409
KDG ++S G+R + +++++ + L + T V +P+G + A + +I
Sbjct: 386 KDGKTLVSGSGDRTVCLWDVEAGEQK-LILHTDDGVTTVMFSPDGQFIAAGSLDKVIRIW 444
Query: 410 SLTTSVVLHKYKFKQQVNAVKFSPDGKYF-AVCCDNTV 520
+ + ++V + ++ V +V FSPDGKY + DNT+
Sbjct: 445 TSSGTLVEQLHGHEESVYSVAFSPDGKYLVSGSLDNTI 482
Score = 26.6 bits (56), Expect = 4.5
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +2
Query: 428 VLHKYKFKQQVNAVKFSPDGKYFAVCCDNTVFV 526
+LH + + V+FS DGK+ A C+ V
Sbjct: 280 LLHTLEHTSVICYVRFSADGKFLATGCNRAAMV 312
>SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 314
Score = 33.1 bits (72), Expect = 0.052
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Frame = +2
Query: 323 SHYNYT----AVDIAPNGMTLLAVTEKGEAQIISLTTSVVLHKYKFKQQVNAVKFSPDGK 490
SHY +T AV I+P+G + G + L S L+ + K +NA+ FSP+
Sbjct: 187 SHYGHTGYVSAVTISPDGSLCASGGRDGTLMLWDLNESTHLYSLEAKANINALVFSPNRY 246
Query: 491 YFAVCCDNTV 520
+ +++
Sbjct: 247 WLCAATGSSI 256
>SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 494
Score = 28.3 bits (60), Expect = 1.5
Identities = 22/96 (22%), Positives = 42/96 (43%), Gaps = 2/96 (2%)
Frame = +2
Query: 233 KDGNCVISPVGNRITIYNLKQNKSNTLSFESHYNYTAVDIAPNGMT--LLAVTEKGEAQI 406
+ G+ VIS G I +++L + S++ + +A N LL+ G +I
Sbjct: 217 QSGSTVISAGGPSIKVWDLVAGRQTPTKKLSNHQKSITCLAMNSENTRLLSGGLDGHVKI 276
Query: 407 ISLTTSVVLHKYKFKQQVNAVKFSPDGKYFAVCCDN 514
+++ V+H K+ + ++ SPD V N
Sbjct: 277 YNISDWKVVHGMKYSGPILSMGLSPDSCNLVVGMSN 312
>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 922
Score = 27.9 bits (59), Expect = 2.0
Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +2
Query: 446 FKQQVNAVKFSPDGKYFAV-CCDNTVFV 526
F V AVK SPDG++ A DNTV V
Sbjct: 533 FTDDVLAVKISPDGRFVAASLLDNTVKV 560
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 27.9 bits (59), Expect = 2.0
Identities = 19/84 (22%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Frame = +2
Query: 236 DGNCVISPVGNRIT-IYNLKQNKSNTLSFESHYNYTAVDIAPNGMTLLAVTEKGEAQIIS 412
+G ++S G+R +++++ + L E TA+ I+PN + + ++ S
Sbjct: 413 NGRFIVSGSGDRTARLWDVETGQC-ILKLEIENGVTAIAISPNDQFIAVGSLDQIIRVWS 471
Query: 413 LTTSVVLHKYKFKQQVNAVKFSPD 484
++ ++V K+ V ++ FSPD
Sbjct: 472 VSGTLVERLEGHKESVYSIAFSPD 495
Score = 25.8 bits (54), Expect = 7.9
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 428 VLHKYKFKQQVNAVKFSPDGKYFAVCCDNTVFV 526
++H + V VKFS +GKY A C+ V
Sbjct: 306 LVHTLEHPSVVCCVKFSNNGKYLATGCNQAANV 338
>SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 296
Score = 27.9 bits (59), Expect = 2.0
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = -1
Query: 456 CCLNLYLCNTTEVVRLIICASPFSVTA 376
CCLN +LC + ++ +C + ++TA
Sbjct: 70 CCLNGWLCESNNILVCDVCRNKINLTA 96
>SPAC12B10.03 |||WD repeat protein, human WDR20
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 543
Score = 27.5 bits (58), Expect = 2.6
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +2
Query: 353 APNGMTLLAVTEKGEAQIISLTTSVVLHKY-KFKQQVNAVKFSPDGKYFAV 502
+P+ L V+E+G ++ VL + + + V +SPDGK+ A+
Sbjct: 331 SPDYQYLALVSERGTLKLFDFVKEHVLDVFHSYFAGLTCVTWSPDGKFIAI 381
>SPBC3B9.15c |scp1||sterol regulatory element binding protein
Scp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 27.5 bits (58), Expect = 2.6
Identities = 10/37 (27%), Positives = 21/37 (56%)
Frame = +2
Query: 419 TSVVLHKYKFKQQVNAVKFSPDGKYFAVCCDNTVFVM 529
T +VL K + + + A+ P G Y ++ +T+F++
Sbjct: 629 TKLVLSKEQMPRTLKAIALDPQGNYVSLFSKDTLFIL 665
>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1689
Score = 26.2 bits (55), Expect = 6.0
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +3
Query: 24 HIVVLSLFMNRTQFHDEYGVILYAVVSNIKSKFNRII 134
+ + L L+ +R ++ DEYGV+ + S ++F +I+
Sbjct: 1297 YAIRLDLY-SRDEYQDEYGVLQEEIESTFSNRFLKIL 1332
>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 512
Score = 26.2 bits (55), Expect = 6.0
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = +2
Query: 452 QQVNAVKFSPDGKYFAVCCDNTVFVMTAPVH 544
Q VN V+F+P+G A D ++ P +
Sbjct: 68 QAVNVVRFNPEGNILATAGDEGTIMLWVPTN 98
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 25.8 bits (54), Expect = 7.9
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = +2
Query: 263 GNRITIYNLKQNKSNTLSFESHY 331
G + T+YN +++ +TLSF+ +Y
Sbjct: 367 GLKQTVYNYQEDPKSTLSFKKNY 389
>SPCC320.10 |srp72||signal recognition particle subunit
Srp72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 561
Score = 25.8 bits (54), Expect = 7.9
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 581 VFKKALDEVTCLDWSSCSRLLXGRIERHDNEDS 679
VF A +T DW+ LL +E+ +N DS
Sbjct: 143 VFNLATRYLTIGDWNQAIELLSSSLEKLENSDS 175
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 25.8 bits (54), Expect = 7.9
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +2
Query: 458 VNAVKFSPDGKYFAVCCDNTVFVM 529
V +V+FSP+G+Y A D+ V ++
Sbjct: 77 VTSVRFSPNGQYLASGSDDRVVII 100
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,233,392
Number of Sequences: 5004
Number of extensions: 64563
Number of successful extensions: 203
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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