Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_C03
         (858 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34753| Best HMM Match : WD40 (HMM E-Value=5.3e-20)                  36   0.042
SB_21841| Best HMM Match : WD40 (HMM E-Value=0.00078)                  34   0.13 
SB_40766| Best HMM Match : WD40 (HMM E-Value=1.19993e-41)              34   0.17 
SB_33497| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.17 
SB_21488| Best HMM Match : WD40 (HMM E-Value=3.5e-16)                  32   0.52 
SB_58511| Best HMM Match : 7tm_1 (HMM E-Value=7.8e-22)                 30   2.1  
SB_19258| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.8  
SB_54574| Best HMM Match : WD40 (HMM E-Value=0)                        29   6.4  
SB_40168| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.4  
SB_52725| Best HMM Match : WD40 (HMM E-Value=2.1e-22)                  28   8.5  
SB_14705| Best HMM Match : WD40 (HMM E-Value=3.6e-20)                  28   8.5  

>SB_34753| Best HMM Match : WD40 (HMM E-Value=5.3e-20)
          Length = 645

 Score = 35.9 bits (79), Expect = 0.042
 Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
 Frame = +2

Query: 341 AVDIAPNGMTLLAVTEKGEAQIISLTTSVVLHKYKF-KQQVNAVKFSPDGKYFAV-CCDN 514
           AV  +P+G ++      G   I+   T   +  YK  K++++ +KFSPDGK+ AV   DN
Sbjct: 191 AVTYSPDGGSIAVGQNDGGFLILEAKTLEKVVGYKDRKEEISDIKFSPDGKFLAVGSHDN 250

Query: 515 TVFVMT 532
            V + T
Sbjct: 251 YVDIYT 256


>SB_21841| Best HMM Match : WD40 (HMM E-Value=0.00078)
          Length = 360

 Score = 34.3 bits (75), Expect = 0.13
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = +2

Query: 311 LSFESHYNYTAVDIAPNGMTLLAVTEKGEAQIISLTTSVVLHKYKFKQQVNAVKFSP-DG 487
           LSF   Y   A   + NG  LL+ +      +  + T     KY+F+  ++ V+F P + 
Sbjct: 46  LSFSHRYESRATTWSRNGRKLLSGSNDWNVSVWDILTGECDQKYRFQSPISKVQFHPRNN 105

Query: 488 KYFAVC 505
           K   VC
Sbjct: 106 KVILVC 111


>SB_40766| Best HMM Match : WD40 (HMM E-Value=1.19993e-41)
          Length = 1487

 Score = 33.9 bits (74), Expect = 0.17
 Identities = 32/110 (29%), Positives = 47/110 (42%), Gaps = 4/110 (3%)
 Frame = +2

Query: 197  EQFTVKVMCSSXKDGNCVISPVGNRI-TIYNLKQ-NKSNTLSFESHYNYTAVDIAPNGMT 370
            E FT    C+  K    +I    N + TI+ L   N   TLS  S    +AV + P G  
Sbjct: 1164 ENFTEITSCALHKATQVLIVGFSNGVFTIHELPDFNLIQTLSI-SQQTISAVAVNPTGEW 1222

Query: 371  L-LAVTEKGEAQIISLTT-SVVLHKYKFKQQVNAVKFSPDGKYFAVCCDN 514
            L    T  G+  +    + S +L +      +N + +SPDG Y A   D+
Sbjct: 1223 LAFGCTSLGQLLVWEWQSESYILKQQGHYYDMNVLAYSPDGNYIATGGDD 1272


>SB_33497| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1308

 Score = 33.9 bits (74), Expect = 0.17
 Identities = 20/94 (21%), Positives = 41/94 (43%), Gaps = 1/94 (1%)
 Frame = +2

Query: 266  NRITIYNLKQNKSNTLSFESHYNYTAVDIAPNGMTLLAVTEKGEAQIISLTTSVVLHKYK 445
            N + +++L+  +            ++V + P+G  L++  E G   +  +T    L  +K
Sbjct: 1168 NTVRLWDLRSQRCIDAIATGDSCVSSVCVNPSGTLLVSGHEDGGCMLYDITAGRTLQFFK 1227

Query: 446  -FKQQVNAVKFSPDGKYFAVCCDNTVFVMTAPVH 544
                   +V+FSPDG +   C  +T  ++    H
Sbjct: 1228 PHTADCRSVRFSPDGHHLLSCSYDTSTILMEMQH 1261


>SB_21488| Best HMM Match : WD40 (HMM E-Value=3.5e-16)
          Length = 675

 Score = 32.3 bits (70), Expect = 0.52
 Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
 Frame = +2

Query: 341 AVDIAPNGMTLLAVTEKGEAQIISLTT--SVVLHKYKFKQQVNAVKFSPDGKYFAVCC-D 511
           AV ++    T+    + G   I ++ +  S+   K   +++++ +K+SPDGK  AV   D
Sbjct: 394 AVSVSSTADTIAVGYKDGSFGIFNVKSGESIFFKKRCAQEKISDLKYSPDGKCLAVASHD 453

Query: 512 NTVFVMT 532
           N ++V T
Sbjct: 454 NNIYVYT 460


>SB_58511| Best HMM Match : 7tm_1 (HMM E-Value=7.8e-22)
          Length = 327

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 13/45 (28%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = +3

Query: 306 TLYHLKVTTIIQ-LLILHQME*HCWLLRKRVKHKL*VLQLLWCYT 437
           T+ HL + T+ + ++I+H M+  CW+ +KR +     L  +W ++
Sbjct: 103 TVLHLLIGTLDRYVMIVHAMKYRCWVTKKRARR---ALAFIWVFS 144


>SB_19258| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 459

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 17/63 (26%), Positives = 29/63 (46%)
 Frame = +2

Query: 335 YTAVDIAPNGMTLLAVTEKGEAQIISLTTSVVLHKYKFKQQVNAVKFSPDGKYFAVCCDN 514
           YT +  +P+G  L + +      I S  T  ++H ++    +  V++SP G   A C  N
Sbjct: 337 YT-ISFSPDGRYLASGSFDKRVHIWSTQTGNLVHSFQGSGGIFEVQWSPRGDKLAACFSN 395

Query: 515 TVF 523
             F
Sbjct: 396 NTF 398


>SB_54574| Best HMM Match : WD40 (HMM E-Value=0)
          Length = 1050

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = +3

Query: 618  TGRPARDSWXVGSKDTTTKIHXVEYLENITMYSLSGHTDKIIG-VFFERKTXI*YGQ*XR 794
            T  P  ++  VG +  T  +  ++  E   MY+L+GHT+K+   +FF   T I       
Sbjct: 849  TFSPRGEAIAVGCESGTISVFNLQ--EARVMYTLAGHTNKLRRCMFFNNDTRILTASLDG 906

Query: 795  XLCLWEA 815
             L +W+A
Sbjct: 907  SLKVWDA 913


>SB_40168| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1554

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 21/98 (21%), Positives = 50/98 (51%), Gaps = 2/98 (2%)
 Frame = +2

Query: 203  FTVKVMCSSXKDGNCVISPVG-NRITIYNLKQN-KSNTLSFESHYNYTAVDIAPNGMTLL 376
            +  KV C    DG  +++ V  ++  +++L++  K + L    + + TAV+I      ++
Sbjct: 1355 YNAKVSC----DGKYLVTMVNYSQAMLWDLEKGVKISDLKESDYDSTTAVEINVQANVIV 1410

Query: 377  AVTEKGEAQIISLTTSVVLHKYKFKQQVNAVKFSPDGK 490
              +  G  ++  L+T  ++H+    +Q ++V  + DG+
Sbjct: 1411 TASGSGGVKVWELSTGKIIHQIP-GEQFSSVFLTEDGR 1447


>SB_52725| Best HMM Match : WD40 (HMM E-Value=2.1e-22)
          Length = 874

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 2/97 (2%)
 Frame = +2

Query: 278 IYNLKQNKSNTLSFESHYNYTAVDIAPNGMTLLAVTEKGEAQIISLTTSVVLHKYKFKQQ 457
           +YN K+   + L   S   YT+V ++P+G T  AV    +  I  +  S +L +      
Sbjct: 303 VYNYKREGESVLKSCS---YTSVTVSPDGRTTFAV--GSDRTIKEICDSQILREVPASDM 357

Query: 458 V-NAVKFSPDGK-YFAVCCDNTVFVMTAPVHFTGEYR 562
           V      S  G+  FA     T+  M  P+   GE++
Sbjct: 358 VLTQCVMSRSGRMLFAGTASGTLRAMKFPLTVPGEWQ 394


>SB_14705| Best HMM Match : WD40 (HMM E-Value=3.6e-20)
          Length = 215

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
 Frame = +2

Query: 320 ESHYNYTAVDIAPNGMTLLAVTEKGEAQIIS-LTTSVVLHKYKFKQQ-VNAVKFSPDGKY 493
           E H     ++ +PNG  L+A  E+    +   ++  ++  K K     VN V+F  D + 
Sbjct: 67  EGHGAVFNIEFSPNGSLLVAACERASFLVFDPVSQQLIKSKRKAHSDCVNCVRFL-DSRS 125

Query: 494 FAVCCDN 514
           F  C D+
Sbjct: 126 FLTCSDD 132


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,233,702
Number of Sequences: 59808
Number of extensions: 483456
Number of successful extensions: 1099
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1098
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2443309836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)