Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_C03
(858 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80447-3|AAB37807.2| 910|Caenorhabditis elegans Hypothetical pr... 95 4e-20
AC024867-3|AAK68601.2| 327|Caenorhabditis elegans Eukaryotic in... 31 1.1
U21322-6|AAN65314.2| 669|Caenorhabditis elegans Hypothetical pr... 30 1.8
U21322-5|AAA62539.1| 1223|Caenorhabditis elegans Hypothetical pr... 30 1.8
AL110501-4|CAB54510.1| 368|Caenorhabditis elegans Hypothetical ... 30 1.8
U41020-2|AAA82332.3| 1732|Caenorhabditis elegans Osmotic avoidan... 30 2.4
DQ360811-1|ABC88648.1| 1737|Caenorhabditis elegans intraflagella... 30 2.4
Z70756-3|CAC42337.1| 2514|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z70756-2|CAA94790.2| 2531|Caenorhabditis elegans Hypothetical pr... 29 3.2
AB018598-1|BAA33886.1| 2514|Caenorhabditis elegans ATM-like prot... 29 3.2
AL021492-3|CAA16382.3| 893|Caenorhabditis elegans Hypothetical ... 29 5.6
Z81508-9|CAB04140.2| 310|Caenorhabditis elegans Hypothetical pr... 28 9.8
U97011-2|AAB52325.2| 689|Caenorhabditis elegans Hypothetical pr... 28 9.8
>U80447-3|AAB37807.2| 910|Caenorhabditis elegans Hypothetical
protein F55F8.3 protein.
Length = 910
Score = 95.5 bits (227), Expect = 4e-20
Identities = 43/138 (31%), Positives = 79/138 (57%), Gaps = 1/138 (0%)
Frame = +2
Query: 233 KDGNCVISPVGNRITIYNLKQNKSNTLSFESHYNYTAVDIAPNGMTLLAVTEKGEAQIIS 412
KDG VISP+GN+++I++L+ N S TL + +YN + I+P+G LLA E+G +
Sbjct: 24 KDGYSVISPIGNKLSIFDLRNNTSKTLDIDCNYNIKRLSISPSGYHLLASDERGVVHFVH 83
Query: 413 LTTSVVLHKYKFKQQVNAVKFSPDGKYFAVCCDNTVFVMTAPVHFTGE-YRPFIMKRVFK 589
L + ++ ++ + + ++++SPD A+C +N + + + Y PF + R +K
Sbjct: 84 LLSEFKIYTFRSNKPIGSLQWSPDATRVAICRENDLQIHEFGKSIENKVYNPFSLSRTYK 143
Query: 590 KALDEVTCLDWSSCSRLL 643
+ D + +DWS + LL
Sbjct: 144 LSSDSLKTIDWSDDANLL 161
Score = 29.9 bits (64), Expect = 2.4
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +1
Query: 163 MKFNYKFQNLLGTVYRKGDVLF 228
M N+K N +GTVYR G V F
Sbjct: 1 MDTNFKLSNCIGTVYRDGQVAF 22
>AC024867-3|AAK68601.2| 327|Caenorhabditis elegans Eukaryotic
initiation factor protein3.I protein.
Length = 327
Score = 31.1 bits (67), Expect = 1.1
Identities = 22/106 (20%), Positives = 47/106 (44%), Gaps = 2/106 (1%)
Frame = +2
Query: 281 YNLKQNKSNTLSFESHYNYTAVDI--APNGMTLLAVTEKGEAQIISLTTSVVLHKYKFKQ 454
Y+L+ + + ES + Y+ D+ +P G L++ + A ++ + L +YK ++
Sbjct: 173 YDLRNPDTPIHTNESVHRYSVQDLQLSPRGDFLISASRDKTAALLDVNDLKKLKQYKSER 232
Query: 455 QVNAVKFSPDGKYFAVCCDNTVFVMTAPVHFTGEYRPFIMKRVFKK 592
VN+ SP+ + + +T G + I VF++
Sbjct: 233 PVNSACISPNRDHICLGGGEDAMQVTQTSVSAGHFEAKIYHMVFEE 278
>U21322-6|AAN65314.2| 669|Caenorhabditis elegans Hypothetical
protein K10D2.1b protein.
Length = 669
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +2
Query: 329 YNYTAVDIAPNGMTLLAVTEKGEAQIISLTTSVV 430
+N+T +D A G LLA ++ G ++I L+ SV+
Sbjct: 326 FNHTVMDFAWCGRNLLACSQDGTVKVIHLSESVI 359
>U21322-5|AAA62539.1| 1223|Caenorhabditis elegans Hypothetical
protein K10D2.1a protein.
Length = 1223
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +2
Query: 329 YNYTAVDIAPNGMTLLAVTEKGEAQIISLTTSVV 430
+N+T +D A G LLA ++ G ++I L+ SV+
Sbjct: 614 FNHTVMDFAWCGRNLLACSQDGTVKVIHLSESVI 647
>AL110501-4|CAB54510.1| 368|Caenorhabditis elegans Hypothetical
protein Y79H2A.6 protein.
Length = 368
Score = 30.3 bits (65), Expect = 1.8
Identities = 20/67 (29%), Positives = 33/67 (49%)
Frame = +2
Query: 443 KFKQQVNAVKFSPDGKYFAVCCDNTVFVMTAPVHFTGEYRPFIMKRVFKKALDEVTCLDW 622
+F + VK+SP FAV + + + ++ E ++ K++ K VTCLDW
Sbjct: 100 RFNRAATYVKWSPLENKFAV---GSGAKLVSVCYYEKENDWWVSKQIKKPIRSTVTCLDW 156
Query: 623 SSCSRLL 643
S + LL
Sbjct: 157 HSNNVLL 163
>U41020-2|AAA82332.3| 1732|Caenorhabditis elegans Osmotic avoidance
abnormal protein1 protein.
Length = 1732
Score = 29.9 bits (64), Expect = 2.4
Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 2/97 (2%)
Frame = +2
Query: 374 LAVTEKGEAQIISLTTSVVLHKYKFKQ-QVNAVKFSPDGKYFAVC-CDNTVFVMTAPVHF 547
+A+ ++ Q T + KY K V + FSPD A+ DN +F+ +
Sbjct: 40 VALLDENGVQKDRFTCKPIDAKYGKKSFTVLCMTFSPDSSRIAIGQSDNVLFIYKVGTSW 99
Query: 548 TGEYRPFIMKRVFKKALDEVTCLDWSSCSRLLXGRIE 658
E + + K V A VTCL W ++L G+++
Sbjct: 100 N-EKKVIVNKFVQPSA---VTCLSWPFDDKILVGQLD 132
>DQ360811-1|ABC88648.1| 1737|Caenorhabditis elegans intraflagellar
transport protein protein.
Length = 1737
Score = 29.9 bits (64), Expect = 2.4
Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 2/97 (2%)
Frame = +2
Query: 374 LAVTEKGEAQIISLTTSVVLHKYKFKQ-QVNAVKFSPDGKYFAVC-CDNTVFVMTAPVHF 547
+A+ ++ Q T + KY K V + FSPD A+ DN +F+ +
Sbjct: 40 VALLDENGVQKDRFTCKPIDAKYGKKSFTVLCMTFSPDSSRIAIGQSDNVLFIYKVGTSW 99
Query: 548 TGEYRPFIMKRVFKKALDEVTCLDWSSCSRLLXGRIE 658
E + + K V A VTCL W ++L G+++
Sbjct: 100 N-EKKVIVNKFVQPSA---VTCLSWPFDDKILVGQLD 132
>Z70756-3|CAC42337.1| 2514|Caenorhabditis elegans Hypothetical protein
T06E4.3b protein.
Length = 2514
Score = 29.5 bits (63), Expect = 3.2
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 548 TGEYRPFIMKRVFKKALDEVTCLDWSSCSR 637
TG+ +PF +K +DE+ CL++S R
Sbjct: 1585 TGKGKPFNSTEAIQKLIDELNCLEYSQIER 1614
>Z70756-2|CAA94790.2| 2531|Caenorhabditis elegans Hypothetical protein
T06E4.3a protein.
Length = 2531
Score = 29.5 bits (63), Expect = 3.2
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 548 TGEYRPFIMKRVFKKALDEVTCLDWSSCSR 637
TG+ +PF +K +DE+ CL++S R
Sbjct: 1585 TGKGKPFNSTEAIQKLIDELNCLEYSQIER 1614
>AB018598-1|BAA33886.1| 2514|Caenorhabditis elegans ATM-like protein
protein.
Length = 2514
Score = 29.5 bits (63), Expect = 3.2
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 548 TGEYRPFIMKRVFKKALDEVTCLDWSSCSR 637
TG+ +PF +K +DE+ CL++S R
Sbjct: 1585 TGKGKPFNSTEAIQKLIDELNCLEYSQIER 1614
>AL021492-3|CAA16382.3| 893|Caenorhabditis elegans Hypothetical
protein Y45F10D.7 protein.
Length = 893
Score = 28.7 bits (61), Expect = 5.6
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Frame = +2
Query: 365 MTLLAVTEKGEAQIISLTTSVVLHKYKFK---QQVNAVKFSPDGKYFAVCCDNTVFV 526
+ L+A+ E G+ +I + T F+ +VNA+ FS DGK+ V DN ++
Sbjct: 525 VALVAIAENGKESVILVDTVCHRVARAFETVGNKVNAMTFSSDGKWLLV-ADNDSYI 580
>Z81508-9|CAB04140.2| 310|Caenorhabditis elegans Hypothetical
protein F20E11.2 protein.
Length = 310
Score = 27.9 bits (59), Expect = 9.8
Identities = 12/40 (30%), Positives = 25/40 (62%)
Frame = -2
Query: 740 NFICVSAERIHSDVL*IFDGVNLRCRVFRSDRPGVSSRTT 621
N IC+++E + DVL +F +N C ++ +P + S+++
Sbjct: 8 NQICIASEIVVFDVLGLFGHINFLCLTYK--KPSLRSKSS 45
>U97011-2|AAB52325.2| 689|Caenorhabditis elegans Hypothetical
protein F31F7.2 protein.
Length = 689
Score = 27.9 bits (59), Expect = 9.8
Identities = 20/94 (21%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Frame = +2
Query: 218 MCSSXKDGNCVISPVGNRITIYNLKQNKSNTLSFESHYNYTAVDIAPNGMTLLAVTEKGE 397
+C KD + I+P +RI + Q+ S F+ +Y+Y +V G+ L+ T
Sbjct: 507 ICEILKDVD--IAPGRSRIAMIQYSQDPSVVFGFDQYYSYESV---RRGVMRLSYTGGAT 561
Query: 398 --AQIISLTTSVVLHKYKFKQQVNAVKFSPDGKY 493
++ ++ ++ H+ K+ ++ P K+
Sbjct: 562 MLSKALAFAGGIMYHEQNLKKTTKKHQYLPTPKH 595
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,065,527
Number of Sequences: 27780
Number of extensions: 366858
Number of successful extensions: 929
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2139963672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -