Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_C03
         (858 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               23   3.6  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   4.8  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   4.8  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    22   6.3  

>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +2

Query: 224 SSXKDGNCVISPVGNRITIYNLKQNKSNTLSFE 322
           ++ K   CVI  V   IT Y +    SNT S E
Sbjct: 113 TAQKFSRCVIDYVKFHITQYMISNANSNTTSEE 145


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
 Frame = +2

Query: 266 NRITIYNLKQNKSNTLSFESHYNYTAVDIAPN-GMTLLAVTEKGEAQIIS 412
           N   IYN      N L  E+  NY  ++   +     L  TEK   +I++
Sbjct: 373 NSCNIYNASSRMENNLRGETQSNYREMEKRQSVPANDLLTTEKDNNEIVT 422


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 276 VILLPTGLITQFPSLXEEHITFTVNCSE 193
           V++   G+I Q P+L ++ I   V  SE
Sbjct: 525 VVVGTAGIILQAPTLYDDRIPIDVRLSE 552


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +3

Query: 699 NITMYSLSGHTD 734
           NITMY L  H D
Sbjct: 149 NITMYDLKSHND 160


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,436
Number of Sequences: 438
Number of extensions: 4298
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27673956
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)