Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_C03
(858 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g15440.2 68414.m01856 transducin family protein / WD-40 repea... 94 1e-19
At1g15440.1 68414.m01855 transducin family protein / WD-40 repea... 94 1e-19
At2g33340.2 68415.m04087 transducin family protein / WD-40 repea... 34 0.14
At2g33340.1 68415.m04086 transducin family protein / WD-40 repea... 34 0.14
At3g49180.1 68416.m05375 transducin family protein / WD-40 repea... 32 0.42
At5g56130.1 68418.m07002 transducin family protein / WD-40 repea... 31 0.74
At5g41300.1 68418.m05019 receptor-like protein kinase-related co... 31 1.3
At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless... 30 2.3
At3g10690.1 68416.m01286 DNA gyrase subunit A family protein sim... 29 3.0
At5g54520.1 68418.m06788 WD-40 repeat family protein contains 5 ... 29 5.2
At5g49950.1 68418.m06185 embryogenesis-associated protein-relate... 29 5.2
At5g41290.1 68418.m05018 receptor-like protein kinase-related co... 28 9.1
At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pf... 28 9.1
At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pf... 28 9.1
At5g23430.2 68418.m02749 transducin family protein / WD-40 repea... 28 9.1
At5g23430.1 68418.m02748 transducin family protein / WD-40 repea... 28 9.1
At1g15470.1 68414.m01860 transducin family protein / WD-40 repea... 28 9.1
At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p... 28 9.1
>At1g15440.2 68414.m01856 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 860
Score = 93.9 bits (223), Expect = 1e-19
Identities = 51/126 (40%), Positives = 73/126 (57%)
Frame = +2
Query: 248 VISPVGNRITIYNLKQNKSNTLSFESHYNYTAVDIAPNGMTLLAVTEKGEAQIISLTTSV 427
+ISPVGNR+++ +L +N S TL E+ N + +P+G LLAV E+ I+L V
Sbjct: 26 LISPVGNRVSVTDLSKNHSVTLPLETSTNICRLASSPDGTFLLAVDEQNRCLFINLPRRV 85
Query: 428 VLHKYKFKQQVNAVKFSPDGKYFAVCCDNTVFVMTAPVHFTGEYRPFIMKRVFKKALDEV 607
VLH+ FK +V A+KFSP+GK+ AV V + +P F PF R F + D+V
Sbjct: 86 VLHRITFKDKVGALKFSPNGKFIAVGIGKLVEIWRSP-GFRRAVLPFERVRTFANSDDKV 144
Query: 608 TCLDWS 625
L+WS
Sbjct: 145 VSLEWS 150
>At1g15440.1 68414.m01855 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 900
Score = 93.9 bits (223), Expect = 1e-19
Identities = 51/126 (40%), Positives = 73/126 (57%)
Frame = +2
Query: 248 VISPVGNRITIYNLKQNKSNTLSFESHYNYTAVDIAPNGMTLLAVTEKGEAQIISLTTSV 427
+ISPVGNR+++ +L +N S TL E+ N + +P+G LLAV E+ I+L V
Sbjct: 26 LISPVGNRVSVTDLSKNHSVTLPLETSTNICRLASSPDGTFLLAVDEQNRCLFINLPRRV 85
Query: 428 VLHKYKFKQQVNAVKFSPDGKYFAVCCDNTVFVMTAPVHFTGEYRPFIMKRVFKKALDEV 607
VLH+ FK +V A+KFSP+GK+ AV V + +P F PF R F + D+V
Sbjct: 86 VLHRITFKDKVGALKFSPNGKFIAVGIGKLVEIWRSP-GFRRAVLPFERVRTFANSDDKV 144
Query: 608 TCLDWS 625
L+WS
Sbjct: 145 VSLEWS 150
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = +3
Query: 636 DSWXVGSKDTTTKIHXVEYLENITM--YSLSGHTDKIIGVFF 755
D VGS+D ++ V L+ + + GH D ++G FF
Sbjct: 154 DYLLVGSRDLAARLFCVRKLKGVLNKPFLFLGHRDSVVGCFF 195
>At2g33340.2 68415.m04087 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 537
Score = 33.9 bits (74), Expect = 0.14
Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 3/93 (3%)
Frame = +2
Query: 272 ITIYNLKQNKSNTLSFESHYN-YTAVDIAPNGMTLLAVTEKGEAQIISLTTSVVLHKYK- 445
+ I+++K +++N F+ H TA+ + NG L E G + L L +K
Sbjct: 377 VKIWDVK-SQANVAKFDGHTGEVTAISFSENGYFLATAAEDG----VRLWDLRKLRNFKS 431
Query: 446 -FKQQVNAVKFSPDGKYFAVCCDNTVFVMTAPV 541
N+V+F P G Y + + TA V
Sbjct: 432 FLSADANSVEFDPSGSYLGIAASDIKVYQTASV 464
>At2g33340.1 68415.m04086 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 565
Score = 33.9 bits (74), Expect = 0.14
Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 3/93 (3%)
Frame = +2
Query: 272 ITIYNLKQNKSNTLSFESHYN-YTAVDIAPNGMTLLAVTEKGEAQIISLTTSVVLHKYK- 445
+ I+++K +++N F+ H TA+ + NG L E G + L L +K
Sbjct: 377 VKIWDVK-SQANVAKFDGHTGEVTAISFSENGYFLATAAEDG----VRLWDLRKLRNFKS 431
Query: 446 -FKQQVNAVKFSPDGKYFAVCCDNTVFVMTAPV 541
N+V+F P G Y + + TA V
Sbjct: 432 FLSADANSVEFDPSGSYLGIAASDIKVYQTASV 464
>At3g49180.1 68416.m05375 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
GTP-binding protein beta chain homolog, Nicotiana
tabacum, PIR:T16970
Length = 438
Score = 32.3 bits (70), Expect = 0.42
Identities = 22/101 (21%), Positives = 47/101 (46%), Gaps = 1/101 (0%)
Frame = +2
Query: 344 VDIAPNGMTLLAVTEKGEAQIISLTTSVVLHKYKFKQQVNAVKFSPDG-KYFAVCCDNTV 520
+D +++ +E ++ SL+ +L F +NA+ P G ++A D+ +
Sbjct: 181 IDYGGCNAVIISSSEDRTCKVWSLSRGKLLKNIIFPSVINALALDPGGCVFYAGARDSKI 240
Query: 521 FVMTAPVHFTGEYRPFIMKRVFKKALDEVTCLDWSSCSRLL 643
++ ++ T EY ++ V +K +TCL + + LL
Sbjct: 241 YI--GAINATSEYGTQVLGSVSEKG-KAITCLAYCADGNLL 278
>At5g56130.1 68418.m07002 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to beta transducin-like protein HET-E2C*4
(GI:17225206) [Podospora anserina]
Length = 315
Score = 31.5 bits (68), Expect = 0.74
Identities = 24/113 (21%), Positives = 49/113 (43%), Gaps = 2/113 (1%)
Frame = +2
Query: 206 TVKVMCSSXKDGNCVISPVGNR-ITIYNLKQNKSNTLSFESHYNYTAVDIAPNGMTLLAV 382
+V +C K + V + G++ + +++ + K T E + P+G +
Sbjct: 68 SVDQLCWDPKHSDLVATASGDKSVRLWDARSGKC-TQQVELSGENINITYKPDGTHVAVG 126
Query: 383 TEKGEAQIISLTTSVVLHKYKFKQQVNAVKFSPDGKYFAVCCD-NTVFVMTAP 538
E I+ + LH+ KF +VN + ++ G +F + TV V++ P
Sbjct: 127 NRDDELTILDVRKFKPLHRRKFNYEVNEIAWNMPGDFFFLTTGLGTVEVLSYP 179
>At5g41300.1 68418.m05019 receptor-like protein kinase-related
contains weak similarity to receptor-like protein kinase
homolog RK20-1 (GI:4530126) [Phaseolus vulgaris];
contains Pfam profile: PF01657 Domain of unknown
function DUF26
Length = 287
Score = 30.7 bits (66), Expect = 1.3
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = -2
Query: 101 NNCIKNHTIFIVKLCSVHK 45
NNC+KN TI IVK C+ H+
Sbjct: 98 NNCVKNATIEIVKNCTNHR 116
>At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless
protein, putative similar to notchless [Xenopus laevis]
GI:3687833; contains Pfam PF00400: WD domain, G-beta
repeat (8 copies)
Length = 473
Score = 29.9 bits (64), Expect = 2.3
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +2
Query: 449 KQQVNAVKFSPDGKYFA-VCCDNTVFVMTAPVHFTGEYRPFIMKRVFKKALDEVTCLDWS 625
+Q VN V FSPDGK+ A D +V + TG++ VF+ + V + WS
Sbjct: 360 QQLVNHVYFSPDGKWIASASFDKSVRLWNG---ITGQF-----VTVFRGHVGPVYQVSWS 411
Query: 626 SCSRLL 643
+ SRLL
Sbjct: 412 ADSRLL 417
>At3g10690.1 68416.m01286 DNA gyrase subunit A family protein
similar to SP|P94605 DNA gyrase subunit A (EC 5.99.1.3).
{Clostridium acetobutylicum}; contains Pfam profiles
PF00521: DNA gyrase/topoisomerase IV A subunit, PF03989:
DNA gyrase C-terminal domain beta-propeller
Length = 950
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +2
Query: 344 VDIAPNGMTLLAVTEKGEAQIISLTTSVVLHKYKFKQQVNAVKFSPDGKYFAVC 505
+D+ PN L+AV+EKG + + T + H+ + V ++ F VC
Sbjct: 593 IDVIPNEEMLMAVSEKGYVKRMKADTFNLQHRGTIGKSVGKLRVDDAMSDFLVC 646
>At5g54520.1 68418.m06788 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to pre-mRNA splicing
factor PRP17 (SP:O60508) [Homo sapiens]
Length = 457
Score = 28.7 bits (61), Expect = 5.2
Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Frame = +2
Query: 272 ITIYNLKQNKSNTLSFESHYNYTAVDI--APNGMTLLAVTEKGEAQIISLTTSVVLHKYK 445
+ ++N+ N + H+N D+ + G++LL+ +++ + V +K
Sbjct: 185 VYVWNVWSNDKKKVRAFLHHNAPVKDVKWSKQGLSLLSCGYDCTSRLFDVERGVETQSFK 244
Query: 446 FKQQVNAVKFSPD 484
+ V VKF PD
Sbjct: 245 EDEVVGVVKFHPD 257
>At5g49950.1 68418.m06185 embryogenesis-associated protein-related
contains weak similarity to Embryogenesis-associated
protein EMB8 (Swiss-Prot:Q40863) [Picea glauca]
Length = 537
Score = 28.7 bits (61), Expect = 5.2
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +2
Query: 485 GKYFAVCCDNTVFVMTAPVHFTGEYRPFIMKRVFKKALDEVT-CLDWSSCSRLLXG 649
G+YF ++ + TA + G+ PF KR+ +A D T LDW S ++ G
Sbjct: 78 GRYFPTFWLSSPHLQTAFLTLFGKSPPFSYKRILYQATDGGTIALDWLMHSDVVEG 133
>At5g41290.1 68418.m05018 receptor-like protein kinase-related
contains weak similarity to receptor-like protein kinase
homolog RK20-1 (GI:4530126) [Phaseolus vulgaris];
contains Pfam PF01657: Domain of unknown function
Length = 287
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -2
Query: 101 NNCIKNHTIFIVKLCSVHK*T*NHNVNLFV 12
N C+KN TI I K C+ H+ +NV+ V
Sbjct: 94 NACVKNATIEIAKNCTNHREAIIYNVDCMV 123
>At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 698
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Frame = +2
Query: 395 EAQIISLTTSVVLHKYKFKQQVN---AVKFSPDGKYFAVCC-DNTVFVMTAPVH 544
++Q+ ++ V+HKYK + + F+ DGK+ C D++V+V H
Sbjct: 514 DSQVRIISGRNVVHKYKGSRNAGNQISASFTADGKHIVSACDDSSVYVWNCVGH 567
>At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 694
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Frame = +2
Query: 395 EAQIISLTTSVVLHKYKFKQQVN---AVKFSPDGKYFAVCC-DNTVFVMTAPVH 544
++Q+ ++ V+HKYK + + F+ DGK+ C D++V+V H
Sbjct: 510 DSQVRIISGRNVVHKYKGSRNAGNQISASFTADGKHIVSACDDSSVYVWNCVGH 563
>At5g23430.2 68418.m02749 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 836
Score = 27.9 bits (59), Expect = 9.1
Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = +2
Query: 272 ITIYNLKQNKSNTLSFESHYNYTAVDIAPNGMTLLAVTEKGEAQIISLTTSVVLHKYK-F 448
I +++L++ K N +VD P G + + +I + +H YK
Sbjct: 83 IKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGH 142
Query: 449 KQQVNAVKFSPDGKY 493
+ VN ++F+PDG++
Sbjct: 143 TRGVNVLRFTPDGRW 157
>At5g23430.1 68418.m02748 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 837
Score = 27.9 bits (59), Expect = 9.1
Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = +2
Query: 272 ITIYNLKQNKSNTLSFESHYNYTAVDIAPNGMTLLAVTEKGEAQIISLTTSVVLHKYK-F 448
I +++L++ K N +VD P G + + +I + +H YK
Sbjct: 83 IKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGH 142
Query: 449 KQQVNAVKFSPDGKY 493
+ VN ++F+PDG++
Sbjct: 143 TRGVNVLRFTPDGRW 157
>At1g15470.1 68414.m01860 transducin family protein / WD-40 repeat
family protein Strong similarity to gb AF096285
serine-threonine kinase receptor-associated protein from
Mus musculus and contains 5 PF|00400 WD40, G-beta repeat
domains. EST gb|F14050 comes from this gene
Length = 333
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/50 (22%), Positives = 26/50 (52%)
Frame = +2
Query: 371 LLAVTEKGEAQIISLTTSVVLHKYKFKQQVNAVKFSPDGKYFAVCCDNTV 520
L + T+ G+ ++ + + ++H + K V + + S DG+Y ++V
Sbjct: 156 LSSCTDTGDIRLWDIRSDKIVHTLETKSPVTSAEVSQDGRYITTADGSSV 205
>At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p80
subunit, putative similar to contains 6 WD-40 repeats
(PF00400); katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 974
Score = 27.9 bits (59), Expect = 9.1
Identities = 18/76 (23%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Frame = +2
Query: 272 ITIYNLKQNKSNTLSFESHY-NYTAVDIAPNGMTLLAVTEKGEAQIISLTTSVVLHKYK- 445
I +++L+++K +F H N +AV+ P G L + + ++ + YK
Sbjct: 31 IKLWDLEESKM-VRAFTGHRSNCSAVEFHPFGEFLASGSSDTNLRVWDTRKKGCIQTYKG 89
Query: 446 FKQQVNAVKFSPDGKY 493
+ ++ ++FSPDG++
Sbjct: 90 HTRGISTIEFSPDGRW 105
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,516,340
Number of Sequences: 28952
Number of extensions: 321557
Number of successful extensions: 832
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1999652000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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