Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_C01
         (841 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36362| Best HMM Match : Asp (HMM E-Value=0)                        175   3e-44
SB_9198| Best HMM Match : Asp (HMM E-Value=2.2e-09)                    43   4e-04
SB_1947| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.2  
SB_8222| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.5  
SB_47634| Best HMM Match : Metallophos (HMM E-Value=1e-11)             29   6.2  
SB_51749| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  

>SB_36362| Best HMM Match : Asp (HMM E-Value=0)
          Length = 326

 Score =  175 bits (427), Expect = 3e-44
 Identities = 86/124 (69%), Positives = 94/124 (75%), Gaps = 3/124 (2%)
 Frame = +1

Query: 232 MKTARTHFHEVGTELELLRLKYDVT---GPSPEPLSNYLDAQYYGVISIGTPPQSFKVVF 402
           M T R    EVG  +E L  KY      G  PEPL NY+DAQYYG I+IGTPPQ F VVF
Sbjct: 1   MPTPRQSLKEVGISVEQLLGKYGGKYEGGDVPEPLINYMDAQYYGEITIGTPPQKFTVVF 60

Query: 403 DTGSSNLWVPSKKCHYTNIACLLHNKYDSRKSKTYVANGTQFAIQYGSGSLSGFLSTDDV 582
           DTGSSNLWVPSKKC +TNIACLLH+KYDS KS TY  NGT+FAI+YGSGSLSGFLS D V
Sbjct: 61  DTGSSNLWVPSKKCSWTNIACLLHDKYDSTKSSTYKKNGTEFAIRYGSGSLSGFLSIDTV 120

Query: 583 TVGG 594
           +VGG
Sbjct: 121 SVGG 124



 Score = 31.5 bits (68), Expect = 0.88
 Identities = 16/30 (53%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +2

Query: 593 GLKVRRQTFAEAVSXPGLP-SXRQFDGISG 679
           G+ V+ QTFAEA+  PGL     +FDGI G
Sbjct: 124 GIDVKGQTFAEALKEPGLTFVAAKFDGILG 153


>SB_9198| Best HMM Match : Asp (HMM E-Value=2.2e-09)
          Length = 278

 Score = 42.7 bits (96), Expect = 4e-04
 Identities = 34/106 (32%), Positives = 47/106 (44%)
 Frame = +1

Query: 259 EVGTELELLRLKYDVTGPSPEPLSNYLDAQYYGVISIGTPPQSFKVVFDTGSSNLWVPSK 438
           + G ++ LLR K D    + E L       YY   ++G+PPQ   V+ DTGSSN  V + 
Sbjct: 11  KTGIKIPLLRTKRD-NNVAMENLKGRPGQGYYIASNLGSPPQRINVLVDTGSSNFAVAAS 69

Query: 439 KCHYTNIACLLHNKYDSRKSKTYVANGTQFAIQYGSGSLSGFLSTD 576
              Y  I    H      KS +Y       ++ Y  GS  G L +D
Sbjct: 70  AHPY--IPYYFH----IDKSTSYKDLNKPVSVPYTQGSWEGELGSD 109


>SB_1947| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 309

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +1

Query: 220 PLHRMKTARTHFHEVGTELELLRLKYDVTGPSPEPLSNY 336
           PL   ++ R H  ++ T LEL+  K   + PS +PL++Y
Sbjct: 112 PLTWNESFRLHIKQIYTNLELITTKQHSSSPSRKPLNSY 150


>SB_8222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 127

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 7/84 (8%)
 Frame = -1

Query: 685 KXSRDPVELAXRRQPGXRHGLGERLAPHLEPRPR*HHQWRGSRRGCRSRTVSRTGCHSRR 506
           + +R P      R+ G    L ER AP   PR R   + R  R     R +++ GC +RR
Sbjct: 29  RTARSPPHSTTDREDGT---LAERHAPQA-PRLRNCWEGRSVRASSLLRQLAKGGCAARR 84

Query: 505 TSW-TCG------CRTCCAANKRC 455
            SW T G      C+T  +A   C
Sbjct: 85  LSWVTPGFSQSRRCKTTASAKLAC 108


>SB_47634| Best HMM Match : Metallophos (HMM E-Value=1e-11)
          Length = 585

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +1

Query: 208 LYRVPLHRMKTARTHFHEVGTELELLRLKYDVTGPSPEP 324
           ++ V L  +K +  ++++ GT+L + +LK   T P P P
Sbjct: 244 IHDVLLTDLKPSSLYYYQYGTDLGMSKLKNFTTAPLPNP 282


>SB_51749| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 174

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 9/58 (15%)
 Frame = -1

Query: 601 LEPRPR*HHQWRG-SRRGC-RSRTVSRTGCHSRRTSWTC-------GCRTCCAANKRC 455
           LE R    + W G S R C   R +++ GC +RR SW         GC+T  +A   C
Sbjct: 40  LEKRRPLRNCWEGRSVRACWLLRQLAKGGCAARRLSWVTPGFSQSRGCKTTTSAKLAC 97


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,353,785
Number of Sequences: 59808
Number of extensions: 491420
Number of successful extensions: 1567
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1567
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2371447782
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)