Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_C01
         (841 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    25   0.87 
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    25   1.1  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    24   1.5  
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    24   1.5  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   2.7  
AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.           23   4.6  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 25.0 bits (52), Expect = 0.87
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = -1

Query: 493 CGCRTCCAANKRCWCSGTFWKAPRGWRIRCRIPP*TTAAAC 371
           C C+TC +  K C+        P   + + R+PP T    C
Sbjct: 435 CECKTCNSKTKCCFAQDD-GLCPYTLKHKIRVPPGTPIYEC 474


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
 Frame = +1

Query: 415 SNLWVPSKKCHYTNIACL---LHNKYDSRKSKTYVAN 516
           SN + P   CH  +IAC    +  K D R  KT   N
Sbjct: 354 SNGYTPVLDCHTAHIACKFADIKEKCDRRNGKTTEEN 390


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
 Frame = +1

Query: 415 SNLWVPSKKCHYTNIACL---LHNKYDSRKSKTYVAN 516
           SN + P   CH  +IAC    +  K D R  KT   N
Sbjct: 354 SNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEEN 390


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
 Frame = +1

Query: 415 SNLWVPSKKCHYTNIACL---LHNKYDSRKSKTYVAN 516
           SN + P   CH  +IAC    +  K D R  KT   N
Sbjct: 65  SNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEEN 101


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = -1

Query: 664 ELAXRRQPGXRHGLGERLAPHLEPRPR*HHQWRGSRRGCRSR 539
           EL   ++ G R      L P+LE +    + W G+ R   SR
Sbjct: 454 ELTYSQEIGDRQERESELVPYLENKGNGVYAWIGAGRDSDSR 495


>AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.
          Length = 126

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 8/36 (22%), Positives = 20/36 (55%)
 Frame = +1

Query: 136 RLLKTTMGKISLFFLALIASSVMALYRVPLHRMKTA 243
           R+++  +GK+ +  +    + V++LY  P+   + A
Sbjct: 76  RVIRAKLGKVGVHCMKTTQAVVVSLYEDPIQPQQAA 111


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,654
Number of Sequences: 438
Number of extensions: 5020
Number of successful extensions: 18
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26945694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)