Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_B24
         (843 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21.04 |med8|sep15|mediator complex subunit Med8|Schizosaccha...    30   0.47 
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom...    28   1.4  
SPCC1442.14c |||adenosine 5'-monophosphoramidase|Schizosaccharom...    27   2.5  
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      27   4.4  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    26   7.7  
SPBC21C3.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   7.7  

>SPBC21.04 |med8|sep15|mediator complex subunit
           Med8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 200

 Score = 29.9 bits (64), Expect = 0.47
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = +2

Query: 41  HSTFNVDFSNVRGLHNNLDAVHHHLETAQ--PALLFLTETQ 157
           H  FN+  S +  L NNL A  H L+T    P+L F  + Q
Sbjct: 47  HKNFNILLSQIHSLSNNLAAHSHTLQTTSIYPSLEFPVKEQ 87


>SPBC354.13 |rga6||GTPase activating protein
           Rga6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 733

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 89  NLDAVHHHLETAQPALLFLTETQISAPDDTSYLEYP 196
           NL ++ H L+T+Q +       Q+S+ D    L+YP
Sbjct: 190 NLSSLSHELQTSQDSPSLSATNQLSSSDTLEPLQYP 225


>SPCC1442.14c |||adenosine
           5'-monophosphoramidase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 133

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 14  IKRVLSAIPHSTFNVDFSNVRGLHNNLDAVHHHL 115
           +K+V  AI    +NV  +N R  H  +D VH H+
Sbjct: 64  VKKVTKAIGPENYNVLQNNGRIAHQFVDHVHFHI 97


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 128 PALLFLTETQISAPDDTSYLEYPGY 202
           P++LF T+   S  DD S+L + G+
Sbjct: 131 PSILFPTDVPCSLDDDVSFLTFKGH 155


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
            subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -3

Query: 688  RRSKWSVDHHTVSGWIGGQQKVQQRRLVPLNI 593
            R+SKW    ++  GW  G  K + RR+ P  I
Sbjct: 1301 RQSKWREWLNSDEGWTQGLSKDKVRRIKPCTI 1332


>SPBC21C3.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 122

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +3

Query: 423 ACLSSTHLRRWWFLETLMLTTKSGWGPEPLTSRVGLPMISPW 548
           A  SST L   W L+  +L   + + P P+  ++  P +  W
Sbjct: 17  AISSSTFLWSTWVLQRTILKRPNFFSPNPVVEKMVHPTLITW 58


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,753,921
Number of Sequences: 5004
Number of extensions: 82452
Number of successful extensions: 186
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)