Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_B24
(843 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0170 - 1352865-1353422,1355049-1355327 29 3.5
04_04_1002 - 30025914-30026021,30026116-30026297,30026626-300269... 29 3.5
04_03_0703 - 18870287-18871351,18871542-18871733 29 3.5
04_01_0229 - 2897484-2900402 29 3.5
01_07_0115 - 41164227-41164452,41164515-41164601,41164757-41165313 29 3.5
12_02_0616 - 21246374-21246462,21246605-21247702,21247800-212481... 29 4.6
09_04_0151 - 15154063-15154296,15155616-15155660,15155749-151558... 29 4.6
10_06_0084 - 10477880-10477897,10477940-10478002,10479523-104795... 29 6.1
07_03_1702 + 28828635-28828905,28831222-28831448,28831601-288322... 29 6.1
05_05_0225 - 23437454-23437793,23438348-23440573,23440771-23441603 29 6.1
04_03_0927 + 20871487-20871903,20872667-20872812,20873204-208733... 29 6.1
02_05_1337 - 35780076-35780290,35780377-35780408,35780490-357805... 29 6.1
10_08_0672 + 19762340-19762432,19762543-19762735,19763225-197632... 28 8.1
02_05_0475 + 29328845-29329027,29329525-29329662 28 8.1
>06_01_0170 - 1352865-1353422,1355049-1355327
Length = 278
Score = 29.5 bits (63), Expect = 3.5
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = -2
Query: 137 GGQAAPSQDGGVRRRGCYVDPLH 69
GG AAP +DGG +R VD LH
Sbjct: 24 GGGAAPDEDGGGEQRPLAVDHLH 46
>04_04_1002 -
30025914-30026021,30026116-30026297,30026626-30026908,
30026992-30027630
Length = 403
Score = 29.5 bits (63), Expect = 3.5
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -2
Query: 167 EQISASPSEKGGQAAPSQDGGVRRRGCY 84
E I P + G AA DGGV +GCY
Sbjct: 142 EYIGEWPQDGGSTAAAGSDGGVFVKGCY 169
>04_03_0703 - 18870287-18871351,18871542-18871733
Length = 418
Score = 29.5 bits (63), Expect = 3.5
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = -2
Query: 455 PPPQMGTAQARG*SPLAHALSELNLHHCCGTCTGTRRLGYSP 330
PPP A+A P + + ++ CCG+ GTRR +SP
Sbjct: 236 PPP----ARAAAGPPSTGSSTSMSRARCCGSACGTRRSTWSP 273
>04_01_0229 - 2897484-2900402
Length = 972
Score = 29.5 bits (63), Expect = 3.5
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +2
Query: 461 LGDFNAHHQEWLGSRTTDLPGRAA 532
LGD ++HH +W+G+ DL +++
Sbjct: 488 LGDHSSHHVKWIGTSNKDLTNKSS 511
>01_07_0115 - 41164227-41164452,41164515-41164601,41164757-41165313
Length = 289
Score = 29.5 bits (63), Expect = 3.5
Identities = 17/45 (37%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Frame = -2
Query: 581 WAVSPAGRGRRPR*NHRQPDPGGQW-FWTPTTLGGEH*SLQEPPP 450
W V GRGRR R P G+W W P T G P P
Sbjct: 151 WGVDDGGRGRR----RRAPTWHGRWKMWPPATSSGSGRGRYHPIP 191
>12_02_0616 -
21246374-21246462,21246605-21247702,21247800-21248110,
21248550-21249251,21252802-21252912,21253396-21253481,
21253753-21253862,21254085-21254236,21254656-21254765
Length = 922
Score = 29.1 bits (62), Expect = 4.6
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = -1
Query: 759 FDTWSSFDXXERESGVAAR-IRQ*SDDPSGASTTTLYPAGSVVSRRSNREGSC 604
F TW S E+E V IR +DDPS + L +VS + R G C
Sbjct: 841 FLTWFSLRSTEQERRVVITFIRTLADDPSSLAGQLLDSFEEIVSSKKPRTGFC 893
>09_04_0151 - 15154063-15154296,15155616-15155660,15155749-15155820,
15155932-15156024,15156282-15156351,15156716-15156912,
15156946-15157215,15158620-15158757,15158841-15158930,
15159041-15159247,15159987-15160154,15160300-15160503,
15160584-15160670,15160748-15160861,15161689-15161835,
15161914-15162063,15162211-15162276,15162376-15162480,
15162625-15162798,15162930-15163154,15163534-15163590,
15163858-15164019,15164234-15164302,15164391-15164471,
15164823-15164925,15165011-15165156,15165285-15165359,
15165441-15165508,15165586-15165667,15165745-15165858,
15166358-15166476,15166692-15166781,15166862-15166988
Length = 1382
Score = 29.1 bits (62), Expect = 4.6
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +3
Query: 453 WWFLETLMLTTKSGWGPEPLTSRVGLPMISPWPTASPS 566
WW L + T GW E + + +GLPM++ TA+PS
Sbjct: 1155 WWHLVASVADTMFGWDSE-VKALLGLPMLA---TATPS 1188
>10_06_0084 -
10477880-10477897,10477940-10478002,10479523-10479575,
10479774-10480589,10480889-10480998,10481338-10482068
Length = 596
Score = 28.7 bits (61), Expect = 6.1
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = +3
Query: 585 VSQILRGTSLLCWTFC*PPIQPDTVWWSTLHLDRLITALSVL 710
+S++L S LC T C I+ +W+TL++ + + ++
Sbjct: 249 LSEVLHSLSHLCSTSCEEKIEQLLAFWNTLYIGKFEATMEIM 290
>07_03_1702 +
28828635-28828905,28831222-28831448,28831601-28832233,
28832311-28832760
Length = 526
Score = 28.7 bits (61), Expect = 6.1
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = -1
Query: 666 TTTLYPAGSVVSRRSNREGSCPSISGTRV 580
T LYPAG+VVSR++ RE S+ G RV
Sbjct: 385 TLRLYPAGAVVSRQALRE---LSLGGVRV 410
>05_05_0225 - 23437454-23437793,23438348-23440573,23440771-23441603
Length = 1132
Score = 28.7 bits (61), Expect = 6.1
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Frame = -1
Query: 642 SVVSRRSNREGSCPSISGTRVGCVT--SWER 556
SVV ++ + EG+C S+ G R G +T SW R
Sbjct: 975 SVVLQKDHGEGACKSVEGERRGVLTAGSWWR 1005
>04_03_0927 +
20871487-20871903,20872667-20872812,20873204-20873301,
20873378-20873572,20873670-20873797,20873892-20874050,
20875119-20875223,20875449-20875559,20875653-20875790,
20875909-20876091,20876362-20876517,20876615-20876738,
20876820-20877030,20877614-20877729,20877828-20878053,
20878218-20878311,20879198-20879275,20879822-20879971,
20880086-20880292,20880584-20880788,20880990-20881096
Length = 1117
Score = 28.7 bits (61), Expect = 6.1
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -1
Query: 714 VAARIRQ*SDDPSGASTTTLYPAGSVVSRRSNR 616
+ +++RQ +DP GA T LY +S +NR
Sbjct: 287 IESKLRQIEEDPEGAGTAHLYSVTQKISGVANR 319
>02_05_1337 -
35780076-35780290,35780377-35780408,35780490-35780584,
35780670-35780743,35780851-35780986,35781072-35781135,
35781333-35781395,35781514-35781656,35781752-35781889,
35781973-35782094,35782210-35782375,35782647-35782652,
35782988-35783059,35783241-35783348,35783719-35783848,
35783964-35784070,35784896-35785005,35785302-35785435,
35785528-35785982,35786068-35786595
Length = 965
Score = 28.7 bits (61), Expect = 6.1
Identities = 22/63 (34%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Frame = -2
Query: 611 ARAPQYLGHGWAVSPAGRGR-RPR-*NHRQPDPGGQWFWTPTTLGGEH*SLQEPPPPQMG 438
+R P + H A P GRGR R R + QP P Q G PPPPQ
Sbjct: 3 SRRPTHRHHTEAPDPGGRGRGRGRAARYAQPQPQPQQQQQQQGRGCRARGASPPPPPQQQ 62
Query: 437 TAQ 429
Q
Sbjct: 63 QQQ 65
>10_08_0672 +
19762340-19762432,19762543-19762735,19763225-19763269,
19763381-19763432,19763601-19763704,19763887-19763987,
19764225-19764283,19764536-19764592,19764944-19764989,
19765187-19765266,19766841-19767096,19767210-19767405,
19768368-19768448,19768536-19768587,19768759-19768862,
19769586-19769686,19769924-19769982,19770491-19770536,
19770789-19770868,19770953-19771013
Length = 621
Score = 28.3 bits (60), Expect = 8.1
Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Frame = -2
Query: 674 ERRPPHCIRLDR----WSAEGPTEKARAPQYLGHGWAVSPAGRGRRPR*NHRQPDPGGQW 507
E PP +R +R W+A G AP + A S A R N +QP PGG+
Sbjct: 272 EACPPRWVREERETRGWAA-GRASDPGAPAPVDRELAFSEADSSRS---NKQQPLPGGRG 327
Query: 506 FWTP 495
W P
Sbjct: 328 SWKP 331
>02_05_0475 + 29328845-29329027,29329525-29329662
Length = 106
Score = 28.3 bits (60), Expect = 8.1
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Frame = -2
Query: 596 YLGHGWAVSPAGRGRRPR*----NHRQPDPGGQWFWTPTTLGGEH 474
+ G W + + + R R N+RQ PGGQ FW T G E+
Sbjct: 43 WAGKSWRIDKSPQALRYRWLLCYNYRQGYPGGQNFWLRTKEGTEN 87
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,198,340
Number of Sequences: 37544
Number of extensions: 762921
Number of successful extensions: 2436
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2434
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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