Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_B24
(843 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D63997-1|BAA23661.1| 1530|Homo sapiens GCP170 protein. 35 0.32
X66533-1|CAA47144.1| 619|Homo sapiens guanylate cyclase protein. 30 9.1
BC117238-1|AAI17239.1| 676|Homo sapiens LIM domains containing ... 30 9.1
BC117236-1|AAI17237.1| 676|Homo sapiens LIM domains containing ... 30 9.1
BC047620-1|AAH47620.2| 619|Homo sapiens guanylate cyclase 1, so... 30 9.1
AJ312686-1|CAC35917.1| 503|Homo sapiens LIM domains containing ... 30 9.1
AJ132408-1|CAB63652.1| 676|Homo sapiens LIM domains containing ... 30 9.1
AF031166-1|AAK54351.1| 272|Homo sapiens SRp46 splicing factor p... 30 9.1
AF031165-1|AAK54350.1| 282|Homo sapiens SRp46 splicing factor p... 30 9.1
AF020340-1|AAB94877.1| 586|Homo sapiens soluble guanylate cycla... 30 9.1
>D63997-1|BAA23661.1| 1530|Homo sapiens GCP170 protein.
Length = 1530
Score = 35.1 bits (77), Expect = 0.32
Identities = 22/63 (34%), Positives = 29/63 (46%)
Frame = -2
Query: 260 HQPGRIHTPRLYAGSCAPIRSRGIRGTKYHPEQISASPSEKGGQAAPSQDGGVRRRGCYV 81
HQ + + RL AG A +R +G PEQ+ + GQ A + DGG R G V
Sbjct: 1396 HQDPGLPSSRLAAGGAAETTARREQGAPQEPEQLPPAAQAGDGQPA-APDGGARPDGARV 1454
Query: 80 DPL 72
L
Sbjct: 1455 SVL 1457
>X66533-1|CAA47144.1| 619|Homo sapiens guanylate cyclase protein.
Length = 619
Score = 30.3 bits (65), Expect = 9.1
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +2
Query: 65 SNVRGLHNNLDAVHHHLETAQPAL 136
SNVR NLDA+H HL T P +
Sbjct: 92 SNVREFLQNLDALHDHLATIYPGM 115
>BC117238-1|AAI17239.1| 676|Homo sapiens LIM domains containing 1
protein.
Length = 676
Score = 30.3 bits (65), Expect = 9.1
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = -3
Query: 373 AVGPVQARVDSGTAPVIYAQPQEGQVP 293
AVGPVQ R S +AP+ + P++G +P
Sbjct: 286 AVGPVQPRTPSVSAPLALSCPRQGGLP 312
>BC117236-1|AAI17237.1| 676|Homo sapiens LIM domains containing 1
protein.
Length = 676
Score = 30.3 bits (65), Expect = 9.1
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = -3
Query: 373 AVGPVQARVDSGTAPVIYAQPQEGQVP 293
AVGPVQ R S +AP+ + P++G +P
Sbjct: 286 AVGPVQPRTPSVSAPLALSCPRQGGLP 312
>BC047620-1|AAH47620.2| 619|Homo sapiens guanylate cyclase 1,
soluble, beta 3 protein.
Length = 619
Score = 30.3 bits (65), Expect = 9.1
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +2
Query: 65 SNVRGLHNNLDAVHHHLETAQPAL 136
SNVR NLDA+H HL T P +
Sbjct: 92 SNVREFLQNLDALHDHLATIYPGM 115
>AJ312686-1|CAC35917.1| 503|Homo sapiens LIM domains containing 1
protein.
Length = 503
Score = 30.3 bits (65), Expect = 9.1
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = -3
Query: 373 AVGPVQARVDSGTAPVIYAQPQEGQVP 293
AVGPVQ R S +AP+ + P++G +P
Sbjct: 286 AVGPVQPRTPSVSAPLALSCPRQGGLP 312
>AJ132408-1|CAB63652.1| 676|Homo sapiens LIM domains containing
protein 1 protein.
Length = 676
Score = 30.3 bits (65), Expect = 9.1
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = -3
Query: 373 AVGPVQARVDSGTAPVIYAQPQEGQVP 293
AVGPVQ R S +AP+ + P++G +P
Sbjct: 286 AVGPVQPRTPSVSAPLALSCPRQGGLP 312
>AF031166-1|AAK54351.1| 272|Homo sapiens SRp46 splicing factor
protein.
Length = 272
Score = 30.3 bits (65), Expect = 9.1
Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Frame = -2
Query: 320 RAATRGTGPVVRGFVDGDNRHQPGRIHTPRLYAGSCAPIRSRG-IRGTKYHPEQISASP 147
R +RG G R G P R H R SC+ RSR RG++Y S SP
Sbjct: 96 RGRSRGGGYGRRSRSYGRRSRSPRRRHRSRSRGPSCSRSRSRSRYRGSRYSRSPYSRSP 154
>AF031165-1|AAK54350.1| 282|Homo sapiens SRp46 splicing factor
protein.
Length = 282
Score = 30.3 bits (65), Expect = 9.1
Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Frame = -2
Query: 320 RAATRGTGPVVRGFVDGDNRHQPGRIHTPRLYAGSCAPIRSRG-IRGTKYHPEQISASP 147
R +RG G R G P R H R SC+ RSR RG++Y S SP
Sbjct: 106 RGRSRGGGYGRRSRSYGRRSRSPRRRHRSRSRGPSCSRSRSRSRYRGSRYSRSPYSRSP 164
>AF020340-1|AAB94877.1| 586|Homo sapiens soluble guanylate cyclase
beta-1 subunit protein.
Length = 586
Score = 30.3 bits (65), Expect = 9.1
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +2
Query: 65 SNVRGLHNNLDAVHHHLETAQPAL 136
SNVR NLDA+H HL T P +
Sbjct: 92 SNVREFLQNLDALHDHLATIYPGM 115
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,610,706
Number of Sequences: 237096
Number of extensions: 3935495
Number of successful extensions: 9064
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9064
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10649685938
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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