Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_B24
         (843 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    25   0.66 
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    25   0.66 
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    23   2.7  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    23   3.5  
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    23   3.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.5  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   3.5  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   3.5  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   4.7  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    22   8.1  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   8.1  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     22   8.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   8.1  

>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 25.4 bits (53), Expect = 0.66
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
 Frame = +2

Query: 74  RGLHNNLDAVHHHLETAQPALLFLTETQISAPDDTS-----YLEYPGYVLEH 214
           R    NLDA+H HL T  P +   +      P+D +     Y + PG  LEH
Sbjct: 95  RDFLQNLDALHDHLGTLYPGMRAPSFRCTERPEDGALILHYYSDRPG--LEH 144


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 25.4 bits (53), Expect = 0.66
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
 Frame = +2

Query: 74  RGLHNNLDAVHHHLETAQPALLFLTETQISAPDDTS-----YLEYPGYVLEH 214
           R    NLDA+H HL T  P +   +      P+D +     Y + PG  LEH
Sbjct: 95  RDFLQNLDALHDHLGTLYPGMRAPSFRCTERPEDGALILHYYSDRPG--LEH 144


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 10/38 (26%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
 Frame = -3

Query: 496 QPLLVVSIKVSKNHH---LRRWVLLKHAVSPLLHMLYQ 392
           +P++ +++++SKNH    +    +L +  SP++  L Q
Sbjct: 3   EPMIDITMEISKNHKEQLISNDYILDNYTSPIVEFLQQ 40


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -2

Query: 287 RGFVDGDNRHQPGR 246
           RG+V GD+++QP R
Sbjct: 322 RGYVAGDSKNQPPR 335


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -2

Query: 287 RGFVDGDNRHQPGR 246
           RG+V GD+++QP R
Sbjct: 33  RGYVAGDSKNQPPR 46


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 7/10 (70%), Positives = 10/10 (100%)
 Frame = -2

Query: 458  PPPPQMGTAQ 429
            PPPP+MG+A+
Sbjct: 1702 PPPPRMGSAE 1711


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +3

Query: 198 ATYWSTTSCVKPGCVYSSGLMPVVAVYEASNN 293
           AT +  TS     C+    +MP  A+YE   N
Sbjct: 79  ATNYFVTSLAFADCLVGLVVMPFSAIYEVLEN 110



 Score = 22.2 bits (45), Expect = 6.2
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 143 LTETQISAPDDTSYLEYPGYVLEHN 217
           L  T  S P+D   LE P   ++HN
Sbjct: 273 LFRTASSTPEDLQDLEEPLTTIQHN 297


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +2

Query: 419 NRVLEQYPSAEVVVLGDFNAHHQEWLGSRTTDLP 520
           N +L+++ S   V+LG+ + HH+ +    +T+ P
Sbjct: 509 NPLLQEHDS---VMLGEISPHHEYYDSKSSTETP 539


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +2

Query: 341 RVYACLYRSHSSDAGSALIEHVQEGTNR 424
           +V+ C Y + +S    AL  H++  TN+
Sbjct: 136 QVFDCRYVTTTSGMFEALCNHIKYSTNK 163


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +3

Query: 204 YWSTTSCVKP 233
           YW+T +CV P
Sbjct: 104 YWNTKNCVNP 113


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 344 LGYSPRDLRAATRGTGPVVRGFVDGDNRHQ 255
           LGY+ +    +TRG  P   G+V    +HQ
Sbjct: 98  LGYTNK---MSTRGKRPASPGYVQPPTKHQ 124


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +2

Query: 455 VVLGDFNAHHQEWLGSRTTDLP 520
           V+LG+ + HH+ +    +T+ P
Sbjct: 216 VMLGEISPHHEYYDSKSSTETP 237


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +1

Query: 280 KPRTTGPVPLVAA 318
           KPR +GPV  VAA
Sbjct: 556 KPRMSGPVAAVAA 568


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 260,783
Number of Sequences: 438
Number of extensions: 6500
Number of successful extensions: 21
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27067071
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)