Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_B22
         (905 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    27   4.8  
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ...    26   6.4  
SPBC19C2.02 |pmt1||DNA methyltransferase homolog|Schizosaccharom...    26   8.5  

>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -2

Query: 286 IPRCAQEANY*CLAPGAACTHCSFFYQKVL*SKV 185
           I RCA  A     +PG  C +CSF   K   +KV
Sbjct: 424 IMRCAVCAELFSYSPGLQCENCSFVCHKKCVTKV 457


>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 317

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -1

Query: 617 LKVYN-EGI*XFRQXNGHNCTTNKPVWA*ETGTFQM 513
           +K++N EG+  F + NG NC    P  A +  TF M
Sbjct: 64  VKIWNREGLIGFFRGNGTNCLRAFPYGAVQFATFNM 99


>SPBC19C2.02 |pmt1||DNA methyltransferase
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 330

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 64  QYNISKPDYQKCICYTK 114
           Q++I KPD   C C+T+
Sbjct: 224 QFDIVKPDSSSCCCFTR 240


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,359,294
Number of Sequences: 5004
Number of extensions: 64309
Number of successful extensions: 146
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)