Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_B22
         (905 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46933-2|CAA87035.1|  101|Caenorhabditis elegans Hypothetical pr...    30   2.6  
AL032628-2|CAA21553.1|  247|Caenorhabditis elegans Hypothetical ...    28   8.0  
AC006790-10|AAF60736.1|  371|Caenorhabditis elegans Collagen pro...    28   8.0  

>Z46933-2|CAA87035.1|  101|Caenorhabditis elegans Hypothetical
           protein F34H10.2 protein.
          Length = 101

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
 Frame = -1

Query: 305 YWLNLT----YTTLRTGSQLLVSRAWSRLYPL 222
           YW+N      Y   RT S+  VS+ W RLYPL
Sbjct: 41  YWVNRAMPNKYRKYRTYSRRSVSQRWKRLYPL 72


>AL032628-2|CAA21553.1|  247|Caenorhabditis elegans Hypothetical
           protein Y38H6A.3 protein.
          Length = 247

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
 Frame = -2

Query: 289 HIPRCAQEANY*CLAPGAACTH---CSFFYQKVL*SKVSITESXE 164
           HI +C  + +  C+A G  CTH   C+  +  +L S  + TE+ E
Sbjct: 87  HIGQCRLDQDSICIALGGVCTHGACCTTPFVSILGSLGTTTETPE 131


>AC006790-10|AAF60736.1|  371|Caenorhabditis elegans Collagen
           protein 71 protein.
          Length = 371

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -3

Query: 441 FVGHRVERTPHRASAGTLSEAAAHSC 364
           FV   VE  PH A+ G+ SE   H C
Sbjct: 146 FVAVGVEEGPHTATTGSDSEGTCHDC 171


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,857,502
Number of Sequences: 27780
Number of extensions: 372710
Number of successful extensions: 760
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2307803960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)