Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_B21
(865 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII... 40 5e-04
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 38 0.002
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 36 0.007
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 33 0.052
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce... 31 0.21
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual 30 0.37
SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo... 29 1.1
SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa... 28 2.0
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces... 27 3.4
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce... 27 3.4
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc... 27 3.4
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 27 4.5
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 27 4.5
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 26 6.0
SPAC821.12 |orb6||serine/threonine protein kinase Orb6|Schizosac... 26 6.0
SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces po... 26 7.9
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch... 26 7.9
SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr 3... 26 7.9
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p... 26 7.9
>SPAC144.09c |sfc2||RNA polymerase III transcription factor
TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
Length = 374
Score = 39.9 bits (89), Expect = 5e-04
Identities = 40/140 (28%), Positives = 55/140 (39%), Gaps = 5/140 (3%)
Frame = +2
Query: 104 GDANFETVLNIDNDLQYDAEVDVICSICNAEFLDPGDLKQHLKVHSTVSTDTERRKT--C 277
G FE + N ++ +A V CSIC +F L+ H+ +H T E RKT C
Sbjct: 184 GHEGFEKWSQLQNHIR-EAHVPS-CSICGRQFKTAAHLRHHVVLHQTT---LEERKTYHC 238
Query: 278 DFCECKYADVEEYAY--HIRDSHLAASKF-CQLCSRVFIDFNKYKQHTRKHYTAKSEYNA 448
CK + A HI H F C C F YK ++H E
Sbjct: 239 PMEGCKKSFTRSSALKKHISVIHEGNMAFHCDSCGTKF----GYKHMLQRHL----ERGT 290
Query: 449 CSQCSALYINEMELERHEVE 508
C + YINE ++ +E
Sbjct: 291 CKKAHKPYINECGIKHDGIE 310
Score = 33.5 bits (73), Expect = 0.040
Identities = 28/117 (23%), Positives = 40/117 (34%), Gaps = 4/117 (3%)
Frame = +2
Query: 185 CNAEFLDPGDLKQHLKVHSTVSTDTERRKTCDFCECKYADVEEYAYHI-RDSHLAASKF- 358
C ++ P L+QHL+ HS ER CD+ C A + I + H F
Sbjct: 30 CGKKYSRPSLLEQHLRTHS-----NERPFVCDYTGCSKAFYRKSHLKIHKRCHTNVKPFS 84
Query: 359 CQL--CSRVFIDFNKYKQHTRKHYTAKSEYNACSQCSALYINEMELERHEVENHKHV 523
C C F ++H H K C + +L H H H+
Sbjct: 85 CHYDGCDAQFYTQQHLERHIEVHRKPKPYACTWEGCDECFSKHQQLRSHISACHTHL 141
Score = 32.3 bits (70), Expect = 0.091
Identities = 24/85 (28%), Positives = 33/85 (38%), Gaps = 4/85 (4%)
Frame = +2
Query: 275 CDFCEC--KYADVEEYAYHIRDSHLAASKFCQL--CSRVFIDFNKYKQHTRKHYTAKSEY 442
C + EC KY+ H+R C CS+ F + K H R H K
Sbjct: 25 CPYEECGKKYSRPSLLEQHLRTHSNERPFVCDYTGCSKAFYRKSHLKIHKRCHTNVKPFS 84
Query: 443 NACSQCSALYINEMELERHEVENHK 517
C A + + LERH +E H+
Sbjct: 85 CHYDGCDAQFYTQQHLERH-IEVHR 108
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 37.9 bits (84), Expect = 0.002
Identities = 20/90 (22%), Positives = 42/90 (46%), Gaps = 8/90 (8%)
Frame = +2
Query: 275 CDFCECKYADVEEYAYHIRDSHLAASKFCQLCSRV--------FIDFNKYKQHTRKHYTA 430
C+FC + D +E H R+ H + C +C +V F +++ ++H K +
Sbjct: 247 CEFCNTHFYDDDELFKHCREKH----ERCYICDQVAGRPTHQYFKNYDSLERHFEKDHYI 302
Query: 431 KSEYNACSQCSALYINEMELERHEVENHKH 520
E + ++ E++L+ H+++ H H
Sbjct: 303 CRERECLERKFVVFGTEIDLKAHQLDEHPH 332
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 35.9 bits (79), Expect = 0.007
Identities = 19/66 (28%), Positives = 25/66 (37%)
Frame = +2
Query: 275 CDFCECKYADVEEYAYHIRDSHLAASKFCQLCSRVFIDFNKYKQHTRKHYTAKSEYNACS 454
C C K+ E HIR H + F +C + F + +QH R H A
Sbjct: 425 CPECSKKFKRSEHLRRHIRSLHTSEKPFVCICGKRFSRRDNLRQHERLHVNASPRLACFF 484
Query: 455 QCSALY 472
Q S Y
Sbjct: 485 QPSGYY 490
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 33.1 bits (72), Expect = 0.052
Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 2/78 (2%)
Frame = +2
Query: 239 STVSTDTERRKTCDFCECKYADVEEYAYHIRDSHLAASKFCQL--CSRVFIDFNKYKQHT 412
ST + D R C C + +E HIR C C++ F ++ +H
Sbjct: 16 STKNPDAPRPYKCPLCTKAFYRLEHQTRHIRTHTGEKPHVCTFPGCAKRFSRSDELTRHA 75
Query: 413 RKHYTAKSEYNACSQCSA 466
R H A S NA + +A
Sbjct: 76 RIHTNANSRRNAAAAAAA 93
Score = 28.3 bits (60), Expect = 1.5
Identities = 13/47 (27%), Positives = 18/47 (38%)
Frame = +2
Query: 359 CQLCSRVFIDFNKYKQHTRKHYTAKSEYNACSQCSALYINEMELERH 499
C LC++ F +H R H K C+ + EL RH
Sbjct: 28 CPLCTKAFYRLEHQTRHIRTHTGEKPHVCTFPGCAKRFSRSDELTRH 74
>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 31.1 bits (67), Expect = 0.21
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +2
Query: 86 LCTTMGGDANFETVLNIDNDLQ-YDAEVDVICSICNAEFLDPGDLKQHLKVH 238
+C G + N+++ +Q + ++ C +C A F+ DLK+HL++H
Sbjct: 444 VCLYNGCNKRIARKYNVESHIQTHLSDRPYRCDLCKAGFVRHHDLKRHLRIH 495
Score = 25.8 bits (54), Expect = 7.9
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Frame = +2
Query: 284 CECKYADVEEYAYHIRDSHLAASKF-CQLCSRVFIDFNKYKQHTRKHYTAKSEYNACSQC 460
C + A HI+ +HL+ + C LC F+ + K+H R H + C +C
Sbjct: 450 CNKRIARKYNVESHIQ-THLSDRPYRCDLCKAGFVRHHDLKRHLRIHENGRP--YVC-EC 505
Query: 461 SALYINEMELERHEVEN 511
+ L RH+ N
Sbjct: 506 LKRFNRLDALNRHKQRN 522
>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1029
Score = 30.3 bits (65), Expect = 0.37
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +2
Query: 536 FLHNLYPFLSSVLNMKMSTFTKVKADDSDYSCTVCDY 646
F H L PF S + +TF K+ + D S TV D+
Sbjct: 576 FSHELTPFASQLAKQLRNTFVKLMQETMDESTTVDDF 612
>SPAC6G10.07 |||nuclear cap-binding complex large subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 780
Score = 28.7 bits (61), Expect = 1.1
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +2
Query: 131 NIDNDLQYDAEVDVICSICNAEFLDPGDLK 220
N+++ L Y+A+VD+ IC + L PG LK
Sbjct: 124 NLNSFLYYEAKVDLRMLICMSFALQPGTLK 153
>SPCC4B3.12 |set9||histone lysine methyltransferase
Set9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 441
Score = 27.9 bits (59), Expect = 2.0
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 386 DFNKYKQHTRKHYTAKSEYNACSQCSALYINE 481
D+ K+++ K K + CS CS +INE
Sbjct: 344 DYRKFREDLWKKRHGKRKVYQCSNCSQTFINE 375
>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 27.1 bits (57), Expect = 3.4
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
Frame = +2
Query: 359 CQLCSRVFIDFNKYKQHTRKHYTAK----SEYNAC-SQCSALYINEMELERHEVENHKH 520
C+ C+R F K+H R H K SE + + C + L RH+ + H++
Sbjct: 72 CETCTRAFARLEHLKRHIRSHTNEKPFTCSEIDGLPTGCGRQFSRRDLLLRHQQKIHRN 130
>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 681
Score = 27.1 bits (57), Expect = 3.4
Identities = 18/76 (23%), Positives = 28/76 (36%), Gaps = 1/76 (1%)
Frame = +2
Query: 185 CNAEFLDPGDLKQHLKVHSTVSTDTERRKTCDFCECKYADVEEYAYHIRDSHLAASKF-C 361
CN F +LK H+ H+ R C C+ +A + H H F C
Sbjct: 577 CNKRFTRAYNLKSHMNTHTNY-----RPFQCSICKKSFARQHDKRRH-EQLHTGIKAFAC 630
Query: 362 QLCSRVFIDFNKYKQH 409
C++ F + +H
Sbjct: 631 VTCNQRFARMDALNRH 646
Score = 25.8 bits (54), Expect = 7.9
Identities = 7/21 (33%), Positives = 16/21 (76%)
Frame = +3
Query: 501 RWKTINTSMKAYSCITCTRSY 563
R + ++T +KA++C+TC + +
Sbjct: 617 RHEQLHTGIKAFACVTCNQRF 637
>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 632
Score = 27.1 bits (57), Expect = 3.4
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +3
Query: 303 TSRNTLTTYATRISPPRSFASFVRVCLSISTNTNSIRESII 425
+ RNT +TY ISP F+S + TN+NS +++
Sbjct: 497 SERNTPSTYGQNISPLPQFSSPSLSSDAFLTNSNSSESALV 537
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2386
Score = 26.6 bits (56), Expect = 4.5
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +3
Query: 18 KLENTLKGNEELQI*VFYYINL 83
KLENTL N EL + + +Y++L
Sbjct: 402 KLENTLFSNSELNLFLLHYLSL 423
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 26.6 bits (56), Expect = 4.5
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = -2
Query: 489 NSISLMYSAEHCEHALYSDLAV*CFRVCCLYLLKSINTREQSWQNFEAARCESRMW 322
N++ ++Y EH AL D LLK I T++Q W+ + R S++W
Sbjct: 603 NALIIVYGKEHANLAL--DTLFKKLPTAAPVLLKRIKTKDQEWR--RSKREWSKIW 654
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 26.2 bits (55), Expect = 6.0
Identities = 16/52 (30%), Positives = 19/52 (36%)
Frame = +2
Query: 359 CQLCSRVFIDFNKYKQHTRKHYTAKSEYNACSQCSALYINEMELERHEVENH 514
C C RVF +H R H K + C + EL RH V H
Sbjct: 6 CPFCKRVFHRQEHQVRHIRSHTGEKPFECSYPSCKKRFTRRDELIRH-VRTH 56
>SPAC821.12 |orb6||serine/threonine protein kinase
Orb6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 469
Score = 26.2 bits (55), Expect = 6.0
Identities = 18/47 (38%), Positives = 20/47 (42%)
Frame = +2
Query: 194 EFLDPGDLKQHLKVHSTVSTDTERRKTCDFCECKYADVEEYAYHIRD 334
EFL GDL L + T S D R + C ADV Y RD
Sbjct: 171 EFLPGGDLMTMLINYDTFSEDVTRFYMAE-CVLAIADVHRMGYIHRD 216
>SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 434
Score = 25.8 bits (54), Expect = 7.9
Identities = 16/65 (24%), Positives = 30/65 (46%)
Frame = +2
Query: 371 SRVFIDFNKYKQHTRKHYTAKSEYNACSQCSALYINEMELERHEVENHKHVDEGVFLHNL 550
S++F++ + HT+KHY + S + + + + L + V VFL+ +
Sbjct: 170 SKIFMEAKSHSTHTKKHYNKLNLLLYSSGVAFIVMIPVWLYQEGFAYLPEVGSPVFLNLI 229
Query: 551 YPFLS 565
Y LS
Sbjct: 230 YNGLS 234
>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
cytochrome c oxidase assembly protein Cox1101,
mitochondrial ribosomal protein
Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 753
Score = 25.8 bits (54), Expect = 7.9
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 492 NGTRWKTINTSMKAYSCITCTRSY 563
N R+ I TS Y+CI+ TR Y
Sbjct: 531 NSHRFPCIFTSFSCYNCISGTRKY 554
>SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 449
Score = 25.8 bits (54), Expect = 7.9
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = +2
Query: 362 QLCSRVFIDFNKYKQHTRKHYTAKSEYN 445
+ CSR+ F+KY + T+++ A + Y+
Sbjct: 236 RFCSRLQCSFHKYDEKTKQYSLASTTYS 263
>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1272
Score = 25.8 bits (54), Expect = 7.9
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Frame = +2
Query: 563 SSVLNMKMSTFTKV-KADDSDYSCT----VCDYKTNDLDLYIQHLQEKNCRV 703
+SV+N+ M+ + K+ K+ D+ KTND +L +QHL C +
Sbjct: 484 TSVINLIMALYVKLLKSLARDFPARSPFEATSQKTNDYELEVQHLFTWTCEL 535
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,298,852
Number of Sequences: 5004
Number of extensions: 69824
Number of successful extensions: 351
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 340
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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