Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_B21
(865 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0113 - 854108-854302,854399-854542,854658-854893,855036-85... 44 1e-04
04_03_0631 - 18190195-18190686,18190866-18191066 31 0.90
09_04_0155 - 15185985-15186755,15187049-15187236,15187479-151875... 31 1.2
12_01_0830 - 7678038-7678444,7678996-7680943,7681231-7681983,768... 31 1.6
01_06_1585 - 38448403-38448512,38448836-38448916,38449388-384494... 30 2.7
06_03_1065 - 27316270-27317032,27317062-27317189 29 4.8
08_02_1553 + 27835320-27835364,27836853-27836966,27837062-278374... 29 6.3
11_06_0229 + 21512943-21513237,21513273-21513756,21514668-21516657 28 8.4
06_03_0211 - 17984029-17984129,17984234-17984302,17984502-17984739 28 8.4
05_01_0042 - 290077-290676,291093-291233,291675-291764,292364-29... 28 8.4
01_03_0315 + 14947450-14948284,14948439-14948540,14948656-149488... 28 8.4
>02_01_0113 -
854108-854302,854399-854542,854658-854893,855036-855315,
856891-857031,857259-857372
Length = 369
Score = 44.4 bits (100), Expect = 1e-04
Identities = 37/112 (33%), Positives = 56/112 (50%), Gaps = 5/112 (4%)
Frame = +2
Query: 170 VICSICNAEFLDPGDLKQHLKVHSTVSTDTERRKTCDF--CECKYADVEEYAYHIRDSHL 343
V C IC + L ++K+HL+ H V + TER K C F CEC +++ HI+ SH
Sbjct: 214 VQCDICGEKHLKK-NIKRHLRAHEEVPS-TERIK-CSFEGCECSFSNKSNLTKHIKASHD 270
Query: 344 AASKF-CQL--CSRVFIDFNKYKQHTRKHYTAKSEYNACSQCSALYINEMEL 490
F C+ C +VF YK H R ++ KS + +Q + ++E L
Sbjct: 271 QVKPFACRFTGCEKVF----PYK-HVRDNH-EKSSAHVYTQANFTEMDEQLL 316
Score = 36.3 bits (80), Expect = 0.032
Identities = 31/132 (23%), Positives = 57/132 (43%), Gaps = 10/132 (7%)
Frame = +2
Query: 161 EVDVICSICNAEFLDPGDLKQHLKVHSTVSTDTERRKTCDFCECKYADV-EEYAYHIRDS 337
E D C C A F P LKQH++ HS ER C +C ++ + +++
Sbjct: 57 EGDHTCQECGASFQKPAHLKQHMQSHS-----DERSFICPLEDCPFSYIRKDHLNRHMLK 111
Query: 338 HLAASKFCQL--CSRVFIDFNKYKQHTRKHY-----TAKSEYNACSQ--CSALYINEMEL 490
H C + C R F ++H ++ + T + C + C+ ++ ++
Sbjct: 112 HQGKLFTCSMDGCGRKFSIKANMQRHVKEIHEDETATKSNRQFVCKEEGCNKVFKYASKM 171
Query: 491 ERHEVENHKHVD 526
++HE E+H +D
Sbjct: 172 KKHE-ESHVKLD 182
>04_03_0631 - 18190195-18190686,18190866-18191066
Length = 230
Score = 31.5 bits (68), Expect = 0.90
Identities = 20/67 (29%), Positives = 33/67 (49%)
Frame = +2
Query: 266 RKTCDFCECKYADVEEYAYHIRDSHLAASKFCQLCSRVFIDFNKYKQHTRKHYTAKSEYN 445
+K CDF Y+D +YA + + + CQ R + ++ KQ++ TA++EY
Sbjct: 66 QKGCDFKLLGYSD-SDYA-GCKVDRKSTTGTCQFLGRSLVSWSFKKQNSIALSTAEAEYV 123
Query: 446 ACSQCSA 466
A C A
Sbjct: 124 AAGSCCA 130
>09_04_0155 -
15185985-15186755,15187049-15187236,15187479-15187517,
15187741-15187768
Length = 341
Score = 31.1 bits (67), Expect = 1.2
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +2
Query: 107 DANFETVLNIDNDLQYDAEVDVICSICNAEFLDPGDLKQHLKV 235
+ N ++ +N ++ A +IC +C A+F DL+ HLKV
Sbjct: 197 EQNKKSSVNPESQGTKAAAATLICRVCQAKFTCQSDLQSHLKV 239
>12_01_0830 -
7678038-7678444,7678996-7680943,7681231-7681983,
7682701-7682824,7683590-7683723
Length = 1121
Score = 30.7 bits (66), Expect = 1.6
Identities = 22/74 (29%), Positives = 35/74 (47%)
Frame = +3
Query: 282 SANANTPTSRNTLTTYATRISPPRSFASFVRVCLSISTNTNSIRESIIPPNLNTTRARNA 461
S+++NT +R T ++R SPP S S S + T +++ PP + + A
Sbjct: 109 SSSSNTALTRTRSTNSSSRCSPPLSLQSSTP---SRRSPTPPGNKTLTPPRRSPSPASRR 165
Query: 462 QRCTSTKWN*NGTR 503
TS+ NGTR
Sbjct: 166 MSATSSGPTLNGTR 179
>01_06_1585 -
38448403-38448512,38448836-38448916,38449388-38449475,
38449571-38449666,38449823-38449879,38449960-38450466,
38450701-38451393,38451612-38451683
Length = 567
Score = 29.9 bits (64), Expect = 2.7
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +2
Query: 353 KFCQLCSRVFIDFNKYKQHTRKHYTAKSEYNACSQCSALYINE 481
K C S I+F ++ T Y AK E CS S++YI E
Sbjct: 475 KLCPPSSTETIEFQYWRTSTANLYKAKKE-RCCSAISSIYIEE 516
>06_03_1065 - 27316270-27317032,27317062-27317189
Length = 296
Score = 29.1 bits (62), Expect = 4.8
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = -3
Query: 194 PRCILNILHRLQHRTVDHCR--CSRRSRNLHHLPWLYKG 84
PRC L +L RLQ R H R +RR R W ++G
Sbjct: 44 PRCALALLGRLQARLPRHRRAGAARRRRRRRQRRWRHQG 82
>08_02_1553 +
27835320-27835364,27836853-27836966,27837062-27837457,
27837751-27837822,27837957-27838082,27838164-27838244,
27838364-27838558,27839018-27840013
Length = 674
Score = 28.7 bits (61), Expect = 6.3
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +2
Query: 134 IDNDLQYDAEVDVICSICNAEFLD 205
+D++ Q D E + C++CNAE+L+
Sbjct: 165 VDSEHQADGEDALFCTLCNAEWLN 188
>11_06_0229 + 21512943-21513237,21513273-21513756,21514668-21516657
Length = 922
Score = 28.3 bits (60), Expect = 8.4
Identities = 11/43 (25%), Positives = 22/43 (51%)
Frame = +2
Query: 143 DLQYDAEVDVICSICNAEFLDPGDLKQHLKVHSTVSTDTERRK 271
D+ YD E + + + L+P + H+K+H ++ D + K
Sbjct: 71 DISYDIEDTIDTFMLHVNGLEPTNTTSHVKIHHKIANDIKYLK 113
>06_03_0211 - 17984029-17984129,17984234-17984302,17984502-17984739
Length = 135
Score = 28.3 bits (60), Expect = 8.4
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = +2
Query: 122 TVLNIDNDLQYD-AEVDVICSICNAEFLDPGDLKQHLKVHSTVSTDTERRKTCDFCE 289
T NI N ++ A D C I + +D G K +H T+ D+E DFC+
Sbjct: 35 TARNIYNSCRFTGASRDKCCKISGCKIVD-GKCKPPF-IHHTLHPDSEESDVLDFCK 89
>05_01_0042 -
290077-290676,291093-291233,291675-291764,292364-292563,
292685-292743,292827-292942
Length = 401
Score = 28.3 bits (60), Expect = 8.4
Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 8/97 (8%)
Frame = +2
Query: 257 TERRKTCDFCEC--KYADVEEYAYHIRDSHLAASKFCQL--CSRVFIDFNKYKQHTRKHY 424
TE C + C + DV H H CQ C + F+D +K K+H H
Sbjct: 83 TEILFLCSYENCGKTFVDVAALRKHAH-VHNERQYICQEPGCGKKFVDSSKLKRHHLIHT 141
Query: 425 TAKS---EYNACSQCSALYIN-EMELERHEVENHKHV 523
K + C + +L N L+ H +EN+ HV
Sbjct: 142 GQKDFICPHPGCGKAFSLDFNLRSHLKTHALENY-HV 177
>01_03_0315 +
14947450-14948284,14948439-14948540,14948656-14948840,
14949444-14949654,14949816-14949999,14950108-14950258,
14950371-14950679
Length = 658
Score = 28.3 bits (60), Expect = 8.4
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +3
Query: 51 LQI*VFYYINLTFVQPWEVMQISRPS*TSTMIYSTMLKSM 170
+ + + ++ L QPW+V Q SR TS Y ++S+
Sbjct: 9 MSVLLLLFLPLAAAQPWQVCQDSRGKYTSNSTYQANIQSL 48
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,127,971
Number of Sequences: 37544
Number of extensions: 436414
Number of successful extensions: 1408
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1405
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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