Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_B19
(838 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal pro... 211 4e-55
Z69302-6|CAL36504.1| 472|Caenorhabditis elegans Hypothetical pr... 31 1.0
U28729-6|AAA68292.1| 549|Caenorhabditis elegans Phosphodiestera... 31 1.0
U28729-5|AAO38607.1| 674|Caenorhabditis elegans Phosphodiestera... 31 1.0
U28729-4|AAN60496.1| 599|Caenorhabditis elegans Phosphodiestera... 31 1.0
U28729-3|AAO38608.1| 612|Caenorhabditis elegans Phosphodiestera... 31 1.0
U28729-2|AAK77625.1| 626|Caenorhabditis elegans Phosphodiestera... 31 1.0
U28729-1|ABB88209.1| 673|Caenorhabditis elegans Phosphodiestera... 31 1.0
Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical pr... 28 9.5
>AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 4 protein.
Length = 345
Score = 211 bits (516), Expect = 4e-55
Identities = 110/219 (50%), Positives = 134/219 (61%), Gaps = 2/219 (0%)
Frame = +1
Query: 148 VFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHR 327
VF+ PIRPDLV+ + + +N RQ + V+ +AG Q SAESWGTGRAVARIPRVRGGGTHR
Sbjct: 26 VFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAGKQHSAESWGTGRAVARIPRVRGGGTHR 85
Query: 328 SGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEK 507
SGQGAFGNMCRGG MFAP K +RRWH QARGH+I++
Sbjct: 86 SGQGAFGNMCRGGHMFAPLKVFRRWHRNVNIAQKRYAVSSAIAASGIPALLQARGHVIDQ 145
Query: 508 IPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKCATVVVSSVXT 687
+ E+PLVV+DKV+ KTK+AV+FLRR W+DI KVY S+R RAGKGK
Sbjct: 146 VAEVPLVVSDKVESFRKTKEAVVFLRRSHLWADIEKVYNSKRNRAGKGKLRNRQHKQKLG 205
Query: 688 PHNLXQGSGSDSR-FXNIPGWSSXMLQ-AEPPXXGPGGH 798
P + +R F NIPG ++ PGGH
Sbjct: 206 PVVIYGQDAECARAFRNIPGVDVMNVERLNLLKLAPGGH 244
>Z69302-6|CAL36504.1| 472|Caenorhabditis elegans Hypothetical
protein F40F8.11 protein.
Length = 472
Score = 31.1 bits (67), Expect = 1.0
Identities = 22/64 (34%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
Frame = +1
Query: 208 NSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHR---SGQGAFGNMCRGGRMFA 378
N R V K H+ SW T + R GGG R SG G RGGR
Sbjct: 137 NKRGTKGVQKMPNHRLEGNSWETNGLQNQTARGGGGGRGRGRGSGGRGRGGFNRGGRFNG 196
Query: 379 PTKP 390
KP
Sbjct: 197 APKP 200
>U28729-6|AAA68292.1| 549|Caenorhabditis elegans Phosphodiesterase
protein 4, isoforma protein.
Length = 549
Score = 31.1 bits (67), Expect = 1.0
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +3
Query: 51 SSEMSLSVARPLVSVYSEKSETVQGAAKPLPXRIQGAHTSGP 176
SS+ V++ L++ Y +K E +P +QG TSGP
Sbjct: 131 SSKSGTQVSKFLITTYMDKEEDEPSIEIEVPTEVQGPSTSGP 172
>U28729-5|AAO38607.1| 674|Caenorhabditis elegans Phosphodiesterase
protein 4, isoformd protein.
Length = 674
Score = 31.1 bits (67), Expect = 1.0
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +3
Query: 51 SSEMSLSVARPLVSVYSEKSETVQGAAKPLPXRIQGAHTSGP 176
SS+ V++ L++ Y +K E +P +QG TSGP
Sbjct: 256 SSKSGTQVSKFLITTYMDKEEDEPSIEIEVPTEVQGPSTSGP 297
>U28729-4|AAN60496.1| 599|Caenorhabditis elegans Phosphodiesterase
protein 4, isoformc protein.
Length = 599
Score = 31.1 bits (67), Expect = 1.0
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +3
Query: 51 SSEMSLSVARPLVSVYSEKSETVQGAAKPLPXRIQGAHTSGP 176
SS+ V++ L++ Y +K E +P +QG TSGP
Sbjct: 181 SSKSGTQVSKFLITTYMDKEEDEPSIEIEVPTEVQGPSTSGP 222
>U28729-3|AAO38608.1| 612|Caenorhabditis elegans Phosphodiesterase
protein 4, isoforme protein.
Length = 612
Score = 31.1 bits (67), Expect = 1.0
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +3
Query: 51 SSEMSLSVARPLVSVYSEKSETVQGAAKPLPXRIQGAHTSGP 176
SS+ V++ L++ Y +K E +P +QG TSGP
Sbjct: 194 SSKSGTQVSKFLITTYMDKEEDEPSIEIEVPTEVQGPSTSGP 235
>U28729-2|AAK77625.1| 626|Caenorhabditis elegans Phosphodiesterase
protein 4, isoformb protein.
Length = 626
Score = 31.1 bits (67), Expect = 1.0
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +3
Query: 51 SSEMSLSVARPLVSVYSEKSETVQGAAKPLPXRIQGAHTSGP 176
SS+ V++ L++ Y +K E +P +QG TSGP
Sbjct: 208 SSKSGTQVSKFLITTYMDKEEDEPSIEIEVPTEVQGPSTSGP 249
>U28729-1|ABB88209.1| 673|Caenorhabditis elegans Phosphodiesterase
protein 4, isoformg protein.
Length = 673
Score = 31.1 bits (67), Expect = 1.0
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +3
Query: 51 SSEMSLSVARPLVSVYSEKSETVQGAAKPLPXRIQGAHTSGP 176
SS+ V++ L++ Y +K E +P +QG TSGP
Sbjct: 255 SSKSGTQVSKFLITTYMDKEEDEPSIEIEVPTEVQGPSTSGP 296
>Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical
protein C29A12.4 protein.
Length = 1560
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = -2
Query: 534 GYNQGKLGNL-FNNVSSSLNERWDASSSNGCCQGRSPLSEVDATVPAP 394
GY G + N+ N VS+ + + ++AS+S G G S +E+D P P
Sbjct: 614 GYT-GCIKNIRMNGVSTKIGQEFEASNSTGIELGCSLSNELDICEPNP 660
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,795,802
Number of Sequences: 27780
Number of extensions: 373128
Number of successful extensions: 1162
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1152
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2066533546
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -