Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_B18
         (855 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha...    78   2e-15
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo...    73   7e-14
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    29   1.1  
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ...    26   5.9  
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos...    26   7.8  

>SPCC364.06 |nap1||nucleosome assembly protein Nap1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 393

 Score = 77.8 bits (183), Expect = 2e-15
 Identities = 51/156 (32%), Positives = 72/156 (46%)
 Frame = +1

Query: 274 KEFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVNGTYEPNDDECLNPWRDDTEEEEL 453
           K + D+E++F  E+                 R+ +V G  EP ++E         ++ E 
Sbjct: 87  KRYSDLESQFQKELFELEKAYAKKYAPIFKRRSEVVRGADEPTEEEI--------KKGEA 138

Query: 454 ARAVQNAAITEGEEKKDDKAIEPPMDPNVKGIPDFWYNIFRNVSMLSEMMQEHDEPILKC 633
           A   +    T  E KK +         + KGIP+FW    +NV  LSEM+   DE  L  
Sbjct: 139 ADENEKKEPTSSESKKQEGG------DDTKGIPEFWLTAMKNVLSLSEMITPEDEGALSH 192

Query: 634 LQDIKVQMHEDPISFTLEFYFAPNEYFTNTVLTKEY 741
           L DI++   E P  F LEF FA N +FTN +LTK Y
Sbjct: 193 LVDIRISYMEKP-GFKLEFEFAENPFFTNKILTKTY 227


>SPBC2D10.11c |||nucleosome assembly protein Nap2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 72.5 bits (170), Expect = 7e-14
 Identities = 40/101 (39%), Positives = 56/101 (55%), Gaps = 2/101 (1%)
 Frame = +1

Query: 532 PNVKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIK-VQMHEDPISFTLEFYFAPNE 708
           P+ KGIP+FW     NV ++ EM+   DE +L+ L DI+   +  D   + LEF F  N+
Sbjct: 161 PDPKGIPEFWLTCLHNVFLVGEMITPEDENVLRSLSDIRFTNLSGDVHGYKLEFEFDSND 220

Query: 709 YFTNTVLTKEYLXKCKPDEXSPLXFEGPEIYS-CKGCEITW 828
           YFTN +LTK Y  K   D+ SP    G  +Y   +G +I W
Sbjct: 221 YFTNKILTKTYYYK---DDLSP---SGEFLYDHAEGDKINW 255


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 143  HLLKSGVTRNEMIAAITNRLHAEAMASLPPXC 238
            HLL++  T +E  AA   +LH + + S P  C
Sbjct: 1596 HLLRNSATNDETKAAFVYQLHKQGILSEPELC 1627


>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 726

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 466 QNAAITEGEEKKDDKAIEPPMDPNVKGIP 552
           +N+ + E EEK D +AIE   + +V G P
Sbjct: 554 KNSLVNEAEEKNDLEAIEAAKNFHVNGKP 582


>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 16/55 (29%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
 Frame = -1

Query: 540 YIGIH-WRLDSLVILLFLTLSDGSI---LYRPS*LFFFSVITPWVETFIIIRFIC 388
           Y G+  + + ++ ILLF ++  G++   L++P  +   SV T W+ + I + F+C
Sbjct: 659 YTGLDSYNIFAVGILLFTSVFAGALWWCLHQPKRMMDRSVKTFWIMSSISLTFLC 713


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,222,834
Number of Sequences: 5004
Number of extensions: 61035
Number of successful extensions: 183
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)