Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_B18
(855 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g26110.1 68417.m03759 nucleosome assembly protein (NAP), puta... 79 4e-15
At2g19480.1 68415.m02277 nucleosome assembly protein (NAP), puta... 79 5e-15
At5g56950.1 68418.m07109 nucleosome assembly protein (NAP), puta... 74 1e-13
At3g13782.1 68416.m01740 nucleosome assembly protein (NAP) famil... 60 2e-09
At1g18800.1 68414.m02343 nucleosome assembly protein (NAP) famil... 51 1e-06
At1g74560.1 68414.m08638 nucleosome assembly protein (NAP) famil... 47 2e-05
At2g23170.1 68415.m02768 auxin-responsive GH3 family protein sim... 32 0.56
At4g02220.1 68417.m00300 zinc finger (MYND type) family protein ... 31 0.74
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 30 1.7
At4g03620.1 68417.m00497 myosin heavy chain-related contains wea... 30 2.3
At2g27470.1 68415.m03320 CCAAT-box binding transcription factor ... 29 3.9
At2g27810.2 68415.m03372 xanthine/uracil permease family protein... 28 6.9
At2g27810.1 68415.m03371 xanthine/uracil permease family protein... 28 6.9
>At4g26110.1 68417.m03759 nucleosome assembly protein (NAP),
putative similar to nucleosome assembly protein 1
[Glycine max] GI:1161252; contains Pfam profile PF00956:
Nucleosome assembly protein (NAP)
Length = 372
Score = 79.0 bits (186), Expect = 4e-15
Identities = 49/135 (36%), Positives = 64/135 (47%)
Frame = +1
Query: 448 ELARAVQNAAITEGEEKKDDKAIEPPMDPNVKGIPDFWYNIFRNVSMLSEMMQEHDEPIL 627
E+ + ++ K D+ E + KG+P FW +N ++SE + E DE L
Sbjct: 96 EIVNGTTEVELAPEDDTKVDQGEEKTAEE--KGVPSFWLTALKNNDVISEEVTERDEGAL 153
Query: 628 KCLQDIKVQMHEDPISFTLEFYFAPNEYFTNTVLTKEYLXKCKPDEXSPLXFEGPEIYSC 807
K L+DIK E+P F LEF+F N YF NTVLTK Y DE PL +
Sbjct: 154 KYLKDIKWCKIEEPKGFKLEFFFDTNPYFKNTVLTKSY---HMIDEDEPL------LEKA 204
Query: 808 KGCEITWXAGKTYCQ 852
G EI W GK Q
Sbjct: 205 MGTEIDWYPGKCLTQ 219
>At2g19480.1 68415.m02277 nucleosome assembly protein (NAP),
putative similar to nucleosome assembly protein 1
[Glycine max] GI:1161252; contains Pfam profile PF00956:
Nucleosome assembly protein (NAP)
Length = 379
Score = 78.6 bits (185), Expect = 5e-15
Identities = 51/130 (39%), Positives = 65/130 (50%)
Frame = +1
Query: 463 VQNAAITEGEEKKDDKAIEPPMDPNVKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQD 642
V+ AA E+ +DK+ E KG+PDFW +N + +E + E DE LK L+D
Sbjct: 104 VEGAAEEVKSEQGEDKSAEE------KGVPDFWLIALKNNEITAEEITERDEGALKYLKD 157
Query: 643 IKVQMHEDPISFTLEFYFAPNEYFTNTVLTKEYLXKCKPDEXSPLXFEGPEIYSCKGCEI 822
IK E+P F LEF+F N YF NTVLTK Y DE P+ + G EI
Sbjct: 158 IKWSRVEEPKGFKLEFFFDQNPYFKNTVLTKTY---HMIDEDEPI------LEKALGTEI 208
Query: 823 TWXAGKTYCQ 852
W GK Q
Sbjct: 209 EWYPGKCLTQ 218
>At5g56950.1 68418.m07109 nucleosome assembly protein (NAP),
putative similar to nucleosome assembly protein 1
[Glycine max] GI:1161252; contains Pfam profile PF00956:
Nucleosome assembly protein (NAP)
Length = 374
Score = 74.1 bits (174), Expect = 1e-13
Identities = 51/132 (38%), Positives = 64/132 (48%), Gaps = 2/132 (1%)
Frame = +1
Query: 463 VQNAAITEG--EEKKDDKAIEPPMDPNVKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCL 636
V A EG E+ K D+ E + KG+P FW +N ++SE + E DE L L
Sbjct: 98 VNGATEVEGAPEDAKMDQGDEKTAEE--KGVPSFWLTALKNNDVISEEITERDEGALIYL 155
Query: 637 QDIKVQMHEDPISFTLEFYFAPNEYFTNTVLTKEYLXKCKPDEXSPLXFEGPEIYSCKGC 816
+DIK E+P F LEF+F N YF NT+LTK Y DE PL + G
Sbjct: 156 KDIKWCKIEEPKGFKLEFFFDQNPYFKNTLLTKAY---HMIDEDEPL------LEKAIGT 206
Query: 817 EITWXAGKTYCQ 852
EI W GK Q
Sbjct: 207 EIDWYPGKCLTQ 218
>At3g13782.1 68416.m01740 nucleosome assembly protein (NAP) family
protein similar to nucleosome assembly protein 1
[Glycine max] GI:1161252; contains Pfam profile PF00956:
Nucleosome assembly protein (NAP)
Length = 329
Score = 59.7 bits (138), Expect = 2e-09
Identities = 38/101 (37%), Positives = 52/101 (51%), Gaps = 1/101 (0%)
Frame = +1
Query: 541 KGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPI-SFTLEFYFAPNEYFT 717
+G+P+FW + ML+ + E DE LK L+DI+ ED +F LEF F N YF
Sbjct: 126 EGVPNFWLIAMKTNEMLANEITERDEAALKYLKDIRSCRVEDTSRNFKLEFLFDSNLYFK 185
Query: 718 NTVLTKEYLXKCKPDEXSPLXFEGPEIYSCKGCEITWXAGK 840
N+VL+K Y DE +GP + G +I W GK
Sbjct: 186 NSVLSKTYHVN---DE------DGPVLEKVIGTDIEWFPGK 217
>At1g18800.1 68414.m02343 nucleosome assembly protein (NAP) family
protein similar to SP|Q01105|SET protein (HLA-DR
associated protein II) (PHAPII) (Phosphatase 2A
inhibitor I2PP2A) {Homo sapiens}; contains Pfam profile
PF00956: Nucleosome assembly protein (NAP)
Length = 256
Score = 50.8 bits (116), Expect = 1e-06
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Frame = +1
Query: 538 VKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPIS-FTLEFYFAPNEYF 714
+K IPDFW F + L E++ E D+ I K L + V+ +D S +++ F F PN +F
Sbjct: 70 IKTIPDFWLTAFLSHPALGELLTEEDQKIFKYLSSLDVEDAKDVKSGYSITFSFNPNPFF 129
Query: 715 TNTVLTKEY 741
+ LTK +
Sbjct: 130 EDGKLTKTF 138
>At1g74560.1 68414.m08638 nucleosome assembly protein (NAP) family
protein similar to SP|Q01105 SET protein (HLA-DR
associated protein II) (PHAPII) (Phosphatase 2A
inhibitor I2PP2A) {Homo sapiens}; contains Pfam profile:
PF00956 nucleosome assembly protein (NAP)
Length = 256
Score = 46.8 bits (106), Expect = 2e-05
Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Frame = +1
Query: 538 VKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPIS-FTLEFYFAPNEYF 714
++ IP FW F + L +++ E D+ I K L ++V+ +D S +++ F+F N +F
Sbjct: 74 IQSIPGFWMTAFLSHPALGDLLTEEDQKIFKYLNSLEVEDAKDVKSGYSITFHFTSNPFF 133
Query: 715 TNTVLTKEY 741
+ LTK +
Sbjct: 134 EDAKLTKTF 142
>At2g23170.1 68415.m02768 auxin-responsive GH3 family protein
similar to auxin-responsive GH3 product [Glycine max]
GI:18591; contains Pfam profile PF03321: GH3
auxin-responsive promoter
Length = 595
Score = 31.9 bits (69), Expect = 0.56
Identities = 21/77 (27%), Positives = 39/77 (50%)
Frame = +1
Query: 430 DDTEEEELARAVQNAAITEGEEKKDDKAIEPPMDPNVKGIPDFWYNIFRNVSMLSEMMQE 609
D T+E EL AV+NA++ GE+ + IE K IP Y I+ + + +
Sbjct: 442 DKTDEAELQSAVENASLLLGEQ--GTRVIEYTSYAETKTIPGH-YVIYWELLVKDQTNPP 498
Query: 610 HDEPILKCLQDIKVQMH 660
+DE + +C +++ ++
Sbjct: 499 NDEVMARCCLEMEESLN 515
>At4g02220.1 68417.m00300 zinc finger (MYND type) family protein /
programmed cell death 2 C-terminal domain-containing
protein similar to SP|Q16342 Programmed cell death
protein 2 (Zinc finger protein Rp-8) {Homo sapiens};
contains Pfam profiles PF01753: MYND finger, PF04194:
Programmed cell death protein 2, C-terminal putative
domain
Length = 418
Score = 31.5 bits (68), Expect = 0.74
Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Frame = +1
Query: 430 DDTEEEELARAVQNAAITEGEEKKDDKAIEPPMDPNVKGIPDFWYNIFRNVSMLSEMMQE 609
DD +++E A N + ++++DD+ EP M V+ W N+ + L+ +
Sbjct: 21 DDDDDDETAVEPINMDEFDDDDEEDDEDYEPVMLGFVESPKFAWSNLRQLFPNLAGGVPA 80
Query: 610 HDEPI-LKCLQDIKVQMHEDPISFTLEFY 693
+P+ L + I + E+P+ F L+ Y
Sbjct: 81 WLDPVNLPSGKSILCDLCEEPMQFVLQLY 109
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +1
Query: 430 DDTEEEELARAVQNAAITEGEEKKDDKAIEPPMDPNVKGI 549
DD +EEE + + +I E EEK D +E P D N+K +
Sbjct: 43 DDDDEEEAVSELNSLSIKE-EEKPDS-ILEEPEDSNIKAV 80
>At4g03620.1 68417.m00497 myosin heavy chain-related contains weak
similarity to Swiss-Prot:P24733 myosin heavy chain,
striated muscle [Aequipecten irradians]
Length = 342
Score = 29.9 bits (64), Expect = 2.3
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +1
Query: 391 YEPND-DECLNPWRDDTEEEELARAVQNAAITEGEEKKDDKAIEPPMDPNV 540
+E N+ +E ++ +R + E+L + VQN A+ +EKK+D P D NV
Sbjct: 199 HELNEMEELVSDFR--AQNEKLLKKVQNCAVEHNKEKKEDIDGPGPGDNNV 247
>At2g27470.1 68415.m03320 CCAAT-box binding transcription factor
subunit HAP3-related contains Pfam PF00808 :
Histone-like transcription factor (CBF/NF-Y) and
archaeal histone; similar to polymerase epsilon p17
subunit (DNA polymerase epsilon subunit 3) (YB-like
protein 1) (YBL1) (NF-YB-like protein) (SP:Q9JKP7) [Mus
musculus];
Length = 275
Score = 29.1 bits (62), Expect = 3.9
Identities = 21/79 (26%), Positives = 35/79 (44%)
Frame = +1
Query: 382 NGTYEPNDDECLNPWRDDTEEEELARAVQNAAITEGEEKKDDKAIEPPMDPNVKGIPDFW 561
NG E NDDE N + +EE +N+ G E ++ + M+ N G+ +
Sbjct: 197 NGNDEENDDE--NTEENGNDEENEKEDEENSMEENGNESEESGNEDHSMEENGSGVGEDN 254
Query: 562 YNIFRNVSMLSEMMQEHDE 618
N +VS E ++ +E
Sbjct: 255 ENEDGSVSGSGEEVESDEE 273
>At2g27810.2 68415.m03372 xanthine/uracil permease family protein
contains Pfam profile: PF00860 permease family
Length = 660
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 469 NAAITEGEEKKDDKAIEPPMDPNVKGIP 552
+AA+T GE KD K PP P +P
Sbjct: 82 SAAVTNGETDKDKKEKPPPPPPGSVAVP 109
>At2g27810.1 68415.m03371 xanthine/uracil permease family protein
contains Pfam profile: PF00860 permease family
Length = 709
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 469 NAAITEGEEKKDDKAIEPPMDPNVKGIP 552
+AA+T GE KD K PP P +P
Sbjct: 82 SAAVTNGETDKDKKEKPPPPPPGSVAVP 109
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,797,980
Number of Sequences: 28952
Number of extensions: 321019
Number of successful extensions: 879
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1989897600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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