Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_B16
         (853 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF...    42   1e-04
SPAC29A4.12c |mug108||sequence orphan|Schizosaccharomyces pombe|...    31   0.27 
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    28   1.5  
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa...    27   3.4  
SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces po...    27   4.5  
SPAC644.12 |cdc5||cell division control protein Cdc5|Schizosacch...    27   4.5  
SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces...    26   5.9  
SPCC663.10 |||methyltransferase, DUF1613 family |Schizosaccharom...    26   7.8  

>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
           eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 918

 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 20/50 (40%), Positives = 29/50 (58%)
 Frame = +2

Query: 266 SDDEEETKRVVRSMKEKRYEELEGIIHSIRNHRKIKDFSSALASFEELQK 415
           S DEEE +RVV+S K+KRYEE    + +I+N     ++      F+ L K
Sbjct: 162 SSDEEEGRRVVKSAKDKRYEEFISCMETIKNAMSSNNWIVVSNEFDHLNK 211


>SPAC29A4.12c |mug108||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 150

 Score = 30.7 bits (66), Expect = 0.27
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = +2

Query: 380 SSALASFEELQKAYTRAAPVVQKEENGVAPRILHKSSCRIGRLGSRS 520
           S  + SF E    Y  A P+VQ+EE+ +     H +   IG   SRS
Sbjct: 32  SMGVHSFNEYMNEYPEAGPLVQEEEDDMESSSYHATQEDIGDDDSRS 78


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1727

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
 Frame = +2

Query: 266  SDDEEETKRVVRSMKE----KRYEELEGIIHSIRNHRKIKDFSSALASFEE-LQKAYTRA 430
            S +E E+  V    K+    K+ EE+  +   +  +  I DFS++ A F   +QK + + 
Sbjct: 1548 SSEEAESASVHADTKDLENLKKTEEMLSVTFQVIFNESISDFSTSTADFTTFVQKEWEKR 1607

Query: 431  APVVQKE 451
              ++QK+
Sbjct: 1608 REILQKD 1614


>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +3

Query: 525 NEREARKALSKGNSKALTSLRQKLRKYTKDFEAEISKFREDPDLPDD 665
           N  E+ K  +K N +    +  K +KY    +AEISKF+ D +  +D
Sbjct: 156 NINESYKNETKSNQRLGEDVPSK-KKYPHSMDAEISKFKWDSNNNND 201


>SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 742

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = +2

Query: 242 APAPVYTFSDDEEETKRVVRSMKEKRYEELEGIIHSIRNHRKIKDFSSALASFEEL 409
           AP  + + +DD  E KR   + +++R       +HSI   R+  + SS   S  ++
Sbjct: 10  APVSLPSLNDDALEKKRAKENSRKQRELRRSSALHSITPRRESLNNSSPFNSSHQV 65


>SPAC644.12 |cdc5||cell division control protein
           Cdc5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 757

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
 Frame = +3

Query: 501 DDWVVGAWNEREARKALSKGNS---KALTSLRQKLRKYTKDFEAEISKFREDPDL 656
           D + + A  ER  R A  + N    KAL  L  KL K   D+E    +F ++ D+
Sbjct: 440 DTFSINAAAERAGRLASERENKIRLKALRELLAKLPKPKNDYELMEPRFADETDV 494


>SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 324

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +3

Query: 540 RKALSKGNSKALTSLRQKLRKYTKDFEAEISKFREDPDLPDD 665
           RK L +GN K   +L+QK+ +   D   + +  R+  D  D+
Sbjct: 47  RKQLKEGNKKQKRALQQKISQMEADLSQKHATERQKLDKGDE 88


>SPCC663.10 |||methyltransferase, DUF1613 family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 502

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 20/63 (31%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
 Frame = -3

Query: 203 PSPSQLQRNDSYLQELVNALSYIKNRVGIQFSSNPLMIDLI-NL*RIERKLSNTDLAHDS 27
           P P   +    Y    +  L  +   VG      PL I    N   I RKL + DL H S
Sbjct: 410 PKPRNPKHGGRYAM-YIEWLMQLSEEVGWNIEVEPLRIPSTRNYALIGRKLLSNDLLHSS 468

Query: 26  LHT 18
           L T
Sbjct: 469 LST 471


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,767,714
Number of Sequences: 5004
Number of extensions: 50325
Number of successful extensions: 162
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)