Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_B16
         (853 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_724| Best HMM Match : eIF-3c_N (HMM E-Value=0)                      77   1e-14
SB_52819| Best HMM Match : E-MAP-115 (HMM E-Value=0.82)                30   2.7  
SB_15878| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_59802| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_50709| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_54| Best HMM Match : Actin (HMM E-Value=0)                          29   6.3  
SB_43487| Best HMM Match : K-box (HMM E-Value=0.79)                    28   8.4  

>SB_724| Best HMM Match : eIF-3c_N (HMM E-Value=0)
          Length = 564

 Score = 77.4 bits (182), Expect = 1e-14
 Identities = 37/62 (59%), Positives = 46/62 (74%)
 Frame = +3

Query: 474 FFIRALVELDDWVVGAWNEREARKALSKGNSKALTSLRQKLRKYTKDFEAEISKFREDPD 653
           FFIRAL EL+D+V   W + E RK LSK N++AL +LRQKLRKY+KDFE +I K+RE   
Sbjct: 40  FFIRALSELEDFVKENWEDAEGRKKLSKINARALATLRQKLRKYSKDFEDDIEKYRESIG 99

Query: 654 LP 659
            P
Sbjct: 100 QP 101


>SB_52819| Best HMM Match : E-MAP-115 (HMM E-Value=0.82)
          Length = 883

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +3

Query: 528 EREARKALSKGNSKALTSLRQKLRKYTKDFEAEISKFRED 647
           ER    A+ + NSK+  + R++ R+   D EAE+S  R++
Sbjct: 791 ERMVSSAMRRLNSKSSAAKRRRRRRKHVDLEAEVSGLRQE 830


>SB_15878| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1929

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +3

Query: 423  LEPHRLFKRRRMELLLEFFIRALVELDDWVVGAWNEREARKAL 551
            LEP    +  R  +L +  IR  VE ++W + +WN  ++  A+
Sbjct: 1416 LEPGVNTEEDRTMMLFDDMIRREVESENWSLNSWNSSDSNSAM 1458


>SB_59802| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3213

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 26/141 (18%), Positives = 62/141 (43%), Gaps = 2/141 (1%)
 Frame = +3

Query: 249 RQFTRLVTMRKKQSELCAQ*KRSVMRN*KELYTLYAIIGKSRILVQH*LLSKSSKR--HT 422
           R+  ++VT+++         +R   R  +  +T +    +  + V+   ++ +  R   T
Sbjct: 117 RKVKKMVTLKEPSGPSSQLKRREKRRGVQRHFTAH--FDRDNVAVRQITITNTYNRLIET 174

Query: 423 LEPHRLFKRRRMELLLEFFIRALVELDDWVVGAWNEREARKALSKGNSKALTSLRQKLRK 602
            E  RL  ++ ++     F     ++D W+     ER+ +   S+    A+ ++RQKL +
Sbjct: 175 SEMRRLSLQKAIKYY--HFCHECEDMDLWMSN--KERQFKSIESQNTLDAIQTVRQKLER 230

Query: 603 YTKDFEAEISKFREDPDLPDD 665
           +  +   + S+  +   L D+
Sbjct: 231 FATEIATKCSRVSDINQLADE 251


>SB_50709| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 953

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +2

Query: 230 PVVRAPAPVYTFSDDEEETKRV 295
           PV+R P PV + +D E  TKRV
Sbjct: 5   PVIRCPLPVNSNTDPERNTKRV 26


>SB_54| Best HMM Match : Actin (HMM E-Value=0)
          Length = 2486

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 22/74 (29%), Positives = 34/74 (45%)
 Frame = +2

Query: 236  VRAPAPVYTFSDDEEETKRVVRSMKEKRYEELEGIIHSIRNHRKIKDFSSALASFEELQK 415
            V  P+P    +   EE  ++++ M  K  +ELE  I   R   + K+    L   EE Q+
Sbjct: 1058 VNEPSPFVKQTSVNEEEVKLLKEMFNKEQQELESRISLER--LRYKEEQQRLRDEEEQQR 1115

Query: 416  AYTRAAPVVQKEEN 457
            A+       Q+EEN
Sbjct: 1116 AWLEKK--FQREEN 1127


>SB_43487| Best HMM Match : K-box (HMM E-Value=0.79)
          Length = 243

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 17/67 (25%), Positives = 34/67 (50%)
 Frame = +2

Query: 263 FSDDEEETKRVVRSMKEKRYEELEGIIHSIRNHRKIKDFSSALASFEELQKAYTRAAPVV 442
           F   E+E  + + S++E+  E    + HS+R  R+        A+F++LQK       VV
Sbjct: 101 FHQREKEFAQEIASLQEENKE----LKHSLRLEREALSLEYDHANFDKLQKLIDELEDVV 156

Query: 443 QKEENGV 463
           ++++  +
Sbjct: 157 KRKKEAI 163


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,919,402
Number of Sequences: 59808
Number of extensions: 346480
Number of successful extensions: 1146
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1071
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1143
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2419355818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)