Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_B16
         (853 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g56150.1 68416.m06241 eukaryotic translation initiation facto...    60   2e-09
At3g22860.1 68416.m02882 eukaryotic translation initiation facto...    52   6e-07
At3g54340.1 68416.m06005 floral homeotic protein APETALA3 (AP3)        30   2.2  
At1g10800.1 68414.m01239 hypothetical protein                          29   3.9  
At4g02720.1 68417.m00368 expressed protein temporary automated f...    29   5.2  
At5g21900.1 68418.m02539 expressed protein                             28   6.9  
At3g51740.1 68416.m05673 leucine-rich repeat transmembrane prote...    28   6.9  
At2g22720.3 68415.m02692 expressed protein                             28   9.1  
At2g22720.2 68415.m02691 expressed protein                             28   9.1  
At2g22720.1 68415.m02693 expressed protein                             28   9.1  

>At3g56150.1 68416.m06241 eukaryotic translation initiation factor 3
           subunit 8 / eIF3 p110 / eIF3c / p105 (TIF3C1) nearly
           identical to SP|O49160 Eukaryotic translation initiation
           factor 3 subunit 8 (eIF3 p110) (eIF3c) (p105)
           {Arabidopsis thaliana}
          Length = 900

 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 27/63 (42%), Positives = 46/63 (73%)
 Frame = +3

Query: 477 FIRALVELDDWVVGAWNEREARKALSKGNSKALTSLRQKLRKYTKDFEAEISKFREDPDL 656
           +I+ LV L+D++  A   +EA+K +S  NSKAL S++QKL+K  K +E +I+K+RE P++
Sbjct: 109 YIKTLVMLEDFLNEALANKEAKKKMSTSNSKALNSMKQKLKKNNKLYEDDINKYREAPEV 168

Query: 657 PDD 665
            ++
Sbjct: 169 EEE 171



 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 19/59 (32%), Positives = 36/59 (61%)
 Frame = +2

Query: 269 DDEEETKRVVRSMKEKRYEELEGIIHSIRNHRKIKDFSSALASFEELQKAYTRAAPVVQ 445
           DD+ +TKRVV+  K+KR+EE+   +  ++N  KI D+ S   +F+++ K   +   + +
Sbjct: 43  DDDTDTKRVVKPAKDKRFEEMTYTVDQMKNAMKINDWVSLQENFDKVNKQLEKVMRITE 101


>At3g22860.1 68416.m02882 eukaryotic translation initiation factor 3
           subunit 8, putative / eIF3c, putative similar to
           eukaryotic translation initiation factor 3 subunit 8
           (eIF3 p110) [Arabidopsis thaliana] SWISS-PROT:O49160
          Length = 800

 Score = 51.6 bits (118), Expect = 6e-07
 Identities = 23/64 (35%), Positives = 43/64 (67%)
 Frame = +3

Query: 477 FIRALVELDDWVVGAWNEREARKALSKGNSKALTSLRQKLRKYTKDFEAEISKFREDPDL 656
           +I+ LV L+D++    +  + ++ +S  NSKAL ++RQKL+K    ++ +I +FRE P++
Sbjct: 98  YIKTLVMLEDFLNE--DNMKTKEKMSTSNSKALNAMRQKLKKNNLQYQEDIKRFRESPEI 155

Query: 657 PDDN 668
            DD+
Sbjct: 156 EDDD 159



 Score = 38.3 bits (85), Expect = 0.006
 Identities = 17/50 (34%), Positives = 31/50 (62%)
 Frame = +2

Query: 281 ETKRVVRSMKEKRYEELEGIIHSIRNHRKIKDFSSALASFEELQKAYTRA 430
           +TKRVV+  K+KR+EE+   I ++++   I D      +FE+L K  +++
Sbjct: 42  DTKRVVKPKKDKRFEEMANTIENMKHAMNINDCVYLQETFEKLNKQISKS 91


>At3g54340.1 68416.m06005 floral homeotic protein APETALA3 (AP3)
          Length = 232

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 31/111 (27%), Positives = 46/111 (41%), Gaps = 5/111 (4%)
 Frame = +3

Query: 333 KELYTLYAIIGKSRILVQH*LLSKSSKRHTLEPHR----LFKRRRMELLLEFFIRALVEL 500
           KE+  LY  I    +        + +KR  LE +R      K+R  E L E  I+ L  L
Sbjct: 65  KEIVDLYQTISDVDVWATQYERMQETKRKLLETNRNLRTQIKQRLGECLDELDIQELRRL 124

Query: 501 DDWVVGAWNEREARKALSKGNSKALTSLRQKLRK-YTKDFEAEISKFREDP 650
           +D +   +     RK  S GN    T  + K ++   K+   E+    EDP
Sbjct: 125 EDEMENTFKLVRERKFKSLGNQIETTKKKNKSQQDIQKNLIHELELRAEDP 175


>At1g10800.1 68414.m01239 hypothetical protein
          Length = 118

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 15/39 (38%), Positives = 25/39 (64%)
 Frame = +3

Query: 543 KALSKGNSKALTSLRQKLRKYTKDFEAEISKFREDPDLP 659
           +ALSK N   L +L +K  +  K  E E+++F+E+ D+P
Sbjct: 77  QALSKENRTLLETLAEK-DEVIKMLEEELNRFKENGDIP 114


>At4g02720.1 68417.m00368 expressed protein temporary automated
           functional assignment
          Length = 422

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
 Frame = +2

Query: 266 SDDEEETKRVVRSMKEKRYEELEG-IIHSIRNHRKIKDFSSALASFEELQKAYTRAAPVV 442
           SD EEE +R  R    KR +          R+HR+   +S +  S +E  KA   A+   
Sbjct: 142 SDSEEEDRRRRRKSSSKRKKSRSSRSFRKKRSHRRKTKYSDSDESSDEDSKAEISASSSG 201

Query: 443 QKEENGVAPRILHKSS 490
           ++E+     +   KSS
Sbjct: 202 EEEDTKSKSKRRKKSS 217


>At5g21900.1 68418.m02539 expressed protein
          Length = 544

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
 Frame = +2

Query: 284 TKRVVRSMKEKRYEELEGI-IHSIRNHRKIKDFSSALASFEELQKAYTRAAPVVQKEENG 460
           T R +R + +K    L G+ I   +  +K K FSS+L  FE+L   Y   A +V   +  
Sbjct: 295 TYRALRILADKFGSTLRGLSIGGCQGIKKHKGFSSSLYKFEKLN--YLSVAGLVSVNDGV 352

Query: 461 VAPRILHKSS 490
           V    + +SS
Sbjct: 353 VRSFFMFRSS 362


>At3g51740.1 68416.m05673 leucine-rich repeat transmembrane protein
           kinase, putative brassinosteroid-insensitive protein
           BRI1 - Arabidopsis thaliana, PIR:T09356
          Length = 836

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 540 RKALSKGNSKALTSLRQKLRKYTKDFEAEIS 632
           +  L  GN  A+  LR+K  K  K+FE E++
Sbjct: 553 KATLEDGNEVAVKRLREKTTKGVKEFEGEVT 583


>At2g22720.3 68415.m02692 expressed protein
          Length = 569

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/56 (26%), Positives = 30/56 (53%)
 Frame = +2

Query: 287 KRVVRSMKEKRYEELEGIIHSIRNHRKIKDFSSALASFEELQKAYTRAAPVVQKEE 454
           K+  RS  ++ ++ L  ++   R  R   D  +  A FE++QK   R+A + ++E+
Sbjct: 490 KKPARSEDQEAFDMLRQLLPPKRFSRYDDDDINMEAGFEDIQKEERRSARIAREED 545


>At2g22720.2 68415.m02691 expressed protein
          Length = 672

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/56 (26%), Positives = 30/56 (53%)
 Frame = +2

Query: 287 KRVVRSMKEKRYEELEGIIHSIRNHRKIKDFSSALASFEELQKAYTRAAPVVQKEE 454
           K+  RS  ++ ++ L  ++   R  R   D  +  A FE++QK   R+A + ++E+
Sbjct: 593 KKPARSEDQEAFDMLRQLLPPKRFSRYDDDDINMEAGFEDIQKEERRSARIAREED 648


>At2g22720.1 68415.m02693 expressed protein
          Length = 340

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/56 (26%), Positives = 30/56 (53%)
 Frame = +2

Query: 287 KRVVRSMKEKRYEELEGIIHSIRNHRKIKDFSSALASFEELQKAYTRAAPVVQKEE 454
           K+  RS  ++ ++ L  ++   R  R   D  +  A FE++QK   R+A + ++E+
Sbjct: 261 KKPARSEDQEAFDMLRQLLPPKRFSRYDDDDINMEAGFEDIQKEERRSARIAREED 316


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,243,264
Number of Sequences: 28952
Number of extensions: 254257
Number of successful extensions: 830
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1980143200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)