Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_B15
         (860 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g49730.1 68418.m06158 ferric reductase-like transmembrane com...    35   0.061
At3g47570.1 68416.m05179 leucine-rich repeat transmembrane prote...    32   0.56 
At4g12700.1 68417.m01994 expressed protein                             30   2.3  
At4g21640.1 68417.m03136 subtilase family protein similar to sub...    28   9.2  
At3g60630.1 68416.m06784 scarecrow transcription factor family p...    28   9.2  

>At5g49730.1 68418.m06158 ferric reductase-like transmembrane
           component family protein similar to ferric-chelate
           reductase (FRO1) [Pisum sativum] GI:15341529; contains
           Pfam profile PF01794: Ferric reductase like
           transmembrane componenent
          Length = 738

 Score = 35.1 bits (77), Expect = 0.061
 Identities = 18/42 (42%), Positives = 26/42 (61%)
 Frame = +3

Query: 45  IGFFSIIITLTEFFWKRNNITSCWEKKNLNGSFIGCVLSGAV 170
           IGF S+I  L  F+ KR NIT+ W K  L   F+GC+++  +
Sbjct: 577 IGFISMITLLDIFYIKRYNITTWWYKGLL---FVGCMVASVL 615


>At3g47570.1 68416.m05179 leucine-rich repeat transmembrane protein
           kinase, putative protein kinase Xa21 - Oryza sativa,
           PIR:A57676
          Length = 1010

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = -3

Query: 555 LLITAPMISSPVFTLSKKCLNLAVLSTFRNVSNGGINAY 439
           L++   M+S P+ T   K LNL  LS F N  +GGI A+
Sbjct: 390 LILDQNMLSGPLPTSLGKLLNLRYLSLFSNRLSGGIPAF 428


>At4g12700.1 68417.m01994 expressed protein
          Length = 561

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 20/56 (35%), Positives = 27/56 (48%)
 Frame = +2

Query: 416 TLVPEDNLYALMPPFETFLNVDKTARLRHFFDNVKTGELIIGAVINRTASGMMLKV 583
           T  PED L+       TFL  +  A L+     VKTGE  + A  N+TA G  + +
Sbjct: 47  TYEPEDPLFHPSDKITTFLTSNSNATLKSDDSIVKTGEDFMAA--NQTAFGGFINI 100


>At4g21640.1 68417.m03136 subtilase family protein similar to
           subtilase SP1 [Oryza sativa] GI:9957714
          Length = 733

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -3

Query: 492 LAVLSTFRNVSNGGINAYKLSSGTRVSVPLV 400
           +++L+    +  G  N +KL SGT +S P+V
Sbjct: 492 VSILAAVSPLDPGAFNGFKLHSGTSMSTPVV 522


>At3g60630.1 68416.m06784 scarecrow transcription factor family
           protein scarecrow-like 6, Arabidopsis thaliana,
           EMBL:AF036303
          Length = 623

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -1

Query: 314 CYDLGR*GAYVSTGIQQSXKAPTPILAKSSSPLSDSH 204
           C+ +   G    T +  S ++P+P ++ S++ LS SH
Sbjct: 43  CFVVNNGGFSEPTSVLDSVRSPSPFVSSSTTTLSSSH 79


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,076,753
Number of Sequences: 28952
Number of extensions: 336087
Number of successful extensions: 813
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 813
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2009406400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)