Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_B14
         (885 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces ...    29   0.67 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   3.6  
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    27   4.7  

>SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 441

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
 Frame = +2

Query: 227 GEEGIKINEKAGEYMRELLSEKIK----LNNSKFPLSMKLIDQEVTKVQASGRITKDSKY 394
           G+  +  N K G    ELL+EKIK    +N+  +P+  K +  E+ +     R+ + +K 
Sbjct: 74  GQLAVSKNAKLGLQQYELLAEKIKIYGQINDDNYPIQKKHLTTEMLRQIPHLRL-RTAKQ 132

Query: 395 VDVFR 409
            ++FR
Sbjct: 133 GEIFR 137


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 13/46 (28%), Positives = 15/46 (32%)
 Frame = +1

Query: 607  SXDPTXPHLAXPPSXXRXRPXXPPXXGSPXELXXALXGXPPPSXXP 744
            S  P  P  A PP      P  PP    P      +   PP +  P
Sbjct: 1688 STPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPP 1733


>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 18/60 (30%), Positives = 20/60 (33%)
 Frame = -1

Query: 813 PXGPRGXXXGXXXXNPNXGDXGAXXXRRXWXXXKGXGXFGGGAXXRGGXXPXSXPGRXXG 634
           P  P+G   G        G  G     R        G FGGG+  RGG    S  G   G
Sbjct: 124 PKKPKGARNGPAGRGGRGGFRGGRGGSRGGFGGNSRGGFGGGS--RGGFGGGSRGGSRGG 181


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,728,973
Number of Sequences: 5004
Number of extensions: 47571
Number of successful extensions: 97
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)