Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_B14
(885 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000197-7|AAU20839.1| 445|Caenorhabditis elegans Star (rna bin... 37 0.022
AF000197-8|AAB52897.2| 328|Caenorhabditis elegans Star (rna bin... 36 0.051
AF000197-6|AAP68907.1| 403|Caenorhabditis elegans Star (rna bin... 36 0.051
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 33 0.27
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 33 0.27
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 33 0.27
U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical pr... 31 0.83
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 31 1.1
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 31 1.1
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 31 1.1
AF106574-2|AAM81088.1| 315|Caenorhabditis elegans Hypothetical ... 31 1.4
AF106574-1|AAY44015.1| 317|Caenorhabditis elegans Hypothetical ... 31 1.4
Z68008-5|CAD91696.1| 1160|Caenorhabditis elegans Hypothetical pr... 30 1.9
U40797-6|AAB37547.1| 235|Caenorhabditis elegans Hypothetical pr... 30 2.5
U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protei... 29 4.4
U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequen... 29 4.4
AF039052-4|AAF98630.1| 981|Caenorhabditis elegans Proteasome re... 29 4.4
AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical ... 29 4.4
AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical ... 29 4.4
AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen prot... 29 4.4
Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical pr... 29 5.8
Z54238-1|CAA90992.2| 281|Caenorhabditis elegans Hypothetical pr... 29 5.8
V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein ( Caeno... 29 5.8
J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein ( C.ele... 29 5.8
Z81124-1|CAB03369.1| 312|Caenorhabditis elegans Hypothetical pr... 28 7.7
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 28 7.7
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 28 7.7
U42439-7|AAA83511.1| 304|Caenorhabditis elegans Collagen protei... 28 7.7
>AF000197-7|AAU20839.1| 445|Caenorhabditis elegans Star (rna
binding protein) familyprotein 2, isoform c protein.
Length = 445
Score = 36.7 bits (81), Expect = 0.022
Identities = 35/147 (23%), Positives = 60/147 (40%), Gaps = 5/147 (3%)
Frame = +2
Query: 161 GYNSGDFKRNTTQGKPEELDQNGEEGIKINEKAGEYMRELLSEKIKLNN--SKFPLSMKL 334
G +SG + T + NG + + + EY+ +LL +K +L + F +L
Sbjct: 37 GPSSGPPQVTITPSGVQSGSANGVSTSQQQQYSAEYLSQLLKDKKQLAAFPNVFHHLERL 96
Query: 335 IDQEVTKVQA---SGRITKDSKYVDVFRDXXXXXXXXXXXXIXEHPKFNFVGKTIRSKRT 505
D+E+ KV+ +K+S + EHP +NFVG+ + +
Sbjct: 97 ADEEINKVRVVLFQCEFSKESAPLPDAEGDSTVHTEKVFVPAKEHPDYNFVGRILGPRGM 156
Query: 506 HYEXXTXXTPLCKMAVLGXGSLTGPAK 586
+ T CK+ V G GS+ K
Sbjct: 157 TAKQLEQETG-CKIMVRGRGSMRDKKK 182
>AF000197-8|AAB52897.2| 328|Caenorhabditis elegans Star (rna
binding protein) familyprotein 2, isoform a protein.
Length = 328
Score = 35.5 bits (78), Expect = 0.051
Identities = 31/126 (24%), Positives = 53/126 (42%), Gaps = 5/126 (3%)
Frame = +2
Query: 224 NGEEGIKINEKAGEYMRELLSEKIKLNN--SKFPLSMKLIDQEVTKVQA---SGRITKDS 388
NG + + + EY+ +LL +K +L + F +L D+E+ KV+ +K+S
Sbjct: 16 NGVSTSQQQQYSAEYLSQLLKDKKQLAAFPNVFHHLERLADEEINKVRVVLFQCEFSKES 75
Query: 389 KYVDVFRDXXXXXXXXXXXXIXEHPKFNFVGKTIRSKRTHYEXXTXXTPLCKMAVLGXGS 568
+ EHP +NFVG+ + + + T CK+ V G GS
Sbjct: 76 APLPDAEGDSTVHTEKVFVPAKEHPDYNFVGRILGPRGMTAKQLEQETG-CKIMVRGRGS 134
Query: 569 LTGPAK 586
+ K
Sbjct: 135 MRDKKK 140
>AF000197-6|AAP68907.1| 403|Caenorhabditis elegans Star (rna
binding protein) familyprotein 2, isoform b protein.
Length = 403
Score = 35.5 bits (78), Expect = 0.051
Identities = 31/126 (24%), Positives = 53/126 (42%), Gaps = 5/126 (3%)
Frame = +2
Query: 224 NGEEGIKINEKAGEYMRELLSEKIKLNN--SKFPLSMKLIDQEVTKVQA---SGRITKDS 388
NG + + + EY+ +LL +K +L + F +L D+E+ KV+ +K+S
Sbjct: 16 NGVSTSQQQQYSAEYLSQLLKDKKQLAAFPNVFHHLERLADEEINKVRVVLFQCEFSKES 75
Query: 389 KYVDVFRDXXXXXXXXXXXXIXEHPKFNFVGKTIRSKRTHYEXXTXXTPLCKMAVLGXGS 568
+ EHP +NFVG+ + + + T CK+ V G GS
Sbjct: 76 APLPDAEGDSTVHTEKVFVPAKEHPDYNFVGRILGPRGMTAKQLEQETG-CKIMVRGRGS 134
Query: 569 LTGPAK 586
+ K
Sbjct: 135 MRDKKK 140
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 33.1 bits (72), Expect = 0.27
Identities = 24/81 (29%), Positives = 25/81 (30%)
Frame = +1
Query: 580 GQXXEDPARSXDPTXPHLAXPPSXXRXRPXXPPXXGSPXELXXALXGXPPPSXXPGXXVP 759
G+ PA S P P PP P PP GSP G PPP P P
Sbjct: 227 GKRQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSP---PPPRTGSPPP--PPTGSPP 281
Query: 760 XVXVSXXXPXXLXXGPXRXPP 822
P P PP
Sbjct: 282 PPPAGGSPPPPRAGSPPPPPP 302
Score = 32.7 bits (71), Expect = 0.36
Identities = 26/87 (29%), Positives = 27/87 (31%), Gaps = 2/87 (2%)
Frame = +1
Query: 568 PDRTGQXXEDPARSXDPTXPHLAXPPSXXRXRPXXPPXXGSP--XELXXALXGXPPPSXX 741
P RTG P S P + PP P PP GSP L G PP
Sbjct: 266 PPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAG 325
Query: 742 PGXXVPXVXVSXXXPXXLXXGPXRXPP 822
G P P P R PP
Sbjct: 326 TGSPPP-------PPRQKRQAPERSPP 345
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 33.1 bits (72), Expect = 0.27
Identities = 24/81 (29%), Positives = 25/81 (30%)
Frame = +1
Query: 580 GQXXEDPARSXDPTXPHLAXPPSXXRXRPXXPPXXGSPXELXXALXGXPPPSXXPGXXVP 759
G+ PA S P P PP P PP GSP G PPP P P
Sbjct: 248 GKRQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSP---PPPRTGSPPP--PPTGSPP 302
Query: 760 XVXVSXXXPXXLXXGPXRXPP 822
P P PP
Sbjct: 303 PPPAGGSPPPPRAGSPPPPPP 323
Score = 32.7 bits (71), Expect = 0.36
Identities = 26/87 (29%), Positives = 27/87 (31%), Gaps = 2/87 (2%)
Frame = +1
Query: 568 PDRTGQXXEDPARSXDPTXPHLAXPPSXXRXRPXXPPXXGSP--XELXXALXGXPPPSXX 741
P RTG P S P + PP P PP GSP L G PP
Sbjct: 287 PPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAG 346
Query: 742 PGXXVPXVXVSXXXPXXLXXGPXRXPP 822
G P P P R PP
Sbjct: 347 TGSPPP-------PPRQKRQAPERSPP 366
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 33.1 bits (72), Expect = 0.27
Identities = 24/81 (29%), Positives = 25/81 (30%)
Frame = +1
Query: 580 GQXXEDPARSXDPTXPHLAXPPSXXRXRPXXPPXXGSPXELXXALXGXPPPSXXPGXXVP 759
G+ PA S P P PP P PP GSP G PPP P P
Sbjct: 233 GKRQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSP---PPPRTGSPPP--PPTGSPP 287
Query: 760 XVXVSXXXPXXLXXGPXRXPP 822
P P PP
Sbjct: 288 PPPAGGSPPPPRAGSPPPPPP 308
Score = 32.7 bits (71), Expect = 0.36
Identities = 26/87 (29%), Positives = 27/87 (31%), Gaps = 2/87 (2%)
Frame = +1
Query: 568 PDRTGQXXEDPARSXDPTXPHLAXPPSXXRXRPXXPPXXGSP--XELXXALXGXPPPSXX 741
P RTG P S P + PP P PP GSP L G PP
Sbjct: 272 PPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAG 331
Query: 742 PGXXVPXVXVSXXXPXXLXXGPXRXPP 822
G P P P R PP
Sbjct: 332 TGSPPP-------PPRQKRQAPERSPP 351
>U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical
protein C34D4.11 protein.
Length = 136
Score = 31.5 bits (68), Expect = 0.83
Identities = 23/79 (29%), Positives = 23/79 (29%)
Frame = -2
Query: 860 GPGGXXXGAGXXXGGXRWGPXXRXXGXXXETXTXGTXXPGXXEGGGXPXRAXXSSXGEPS 681
GPG G G GG R G G G G GGG G
Sbjct: 52 GPGWGRGGGGSGWGGGRGGGWGNNGGGGNWGGNGGGGNGGGGRGGGGGGGGGRGGGGGGR 111
Query: 680 XGGXXGRXLXXEGGQAR*G 624
GG G GG R G
Sbjct: 112 GGGGGGGGGRGGGGGGRGG 130
Score = 28.7 bits (61), Expect = 5.8
Identities = 24/81 (29%), Positives = 24/81 (29%), Gaps = 6/81 (7%)
Frame = -2
Query: 884 GGXXXXRRGPGGXXXGA------GXXXGGXRWGPXXRXXGXXXETXTXGTXXPGXXEGGG 723
GG RG GG G G GG WG G G G GGG
Sbjct: 50 GGGPGWGRGGGGSGWGGGRGGGWGNNGGGGNWG--GNGGGGNGGGGRGGGGGGGGGRGGG 107
Query: 722 XPXRAXXSSXGEPSXGGXXGR 660
R G GG GR
Sbjct: 108 GGGRGGGGGGGGGRGGGGGGR 128
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 31.1 bits (67), Expect = 1.1
Identities = 24/86 (27%), Positives = 24/86 (27%)
Frame = +1
Query: 565 LPDRTGQXXEDPARSXDPTXPHLAXPPSXXRXRPXXPPXXGSPXELXXALXGXPPPSXXP 744
LP TG P P PP PP P L G PPP P
Sbjct: 706 LPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPP 765
Query: 745 GXXVPXVXVSXXXPXXLXXGPXRXPP 822
G P P GP PP
Sbjct: 766 GGCPP--PPPPPPPGGFKGGPPPPPP 789
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 31.1 bits (67), Expect = 1.1
Identities = 24/86 (27%), Positives = 24/86 (27%)
Frame = +1
Query: 565 LPDRTGQXXEDPARSXDPTXPHLAXPPSXXRXRPXXPPXXGSPXELXXALXGXPPPSXXP 744
LP TG P P PP PP P L G PPP P
Sbjct: 706 LPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPP 765
Query: 745 GXXVPXVXVSXXXPXXLXXGPXRXPP 822
G P P GP PP
Sbjct: 766 GGCPP--PPPPPPPGGFKGGPPPPPP 789
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 31.1 bits (67), Expect = 1.1
Identities = 24/86 (27%), Positives = 24/86 (27%)
Frame = +1
Query: 565 LPDRTGQXXEDPARSXDPTXPHLAXPPSXXRXRPXXPPXXGSPXELXXALXGXPPPSXXP 744
LP TG P P PP PP P L G PPP P
Sbjct: 289 LPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPP 348
Query: 745 GXXVPXVXVSXXXPXXLXXGPXRXPP 822
G P P GP PP
Sbjct: 349 GGCPP--PPPPPPPGGFKGGPPPPPP 372
>AF106574-2|AAM81088.1| 315|Caenorhabditis elegans Hypothetical
protein E02D9.1b protein.
Length = 315
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +2
Query: 449 IXEHPKFNFVGKTIRSKRTHYEXXTXXTPLCKMAVLGXGS 568
I HP FNF+GK + K + T C + +LG GS
Sbjct: 137 IYRHPNFNFIGKVLGPKGATLQ-TLCKTHKCHIYILGRGS 175
>AF106574-1|AAY44015.1| 317|Caenorhabditis elegans Hypothetical
protein E02D9.1c protein.
Length = 317
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +2
Query: 449 IXEHPKFNFVGKTIRSKRTHYEXXTXXTPLCKMAVLGXGS 568
I HP FNF+GK + K + T C + +LG GS
Sbjct: 137 IYRHPNFNFIGKVLGPKGATLQ-TLCKTHKCHIYILGRGS 175
>Z68008-5|CAD91696.1| 1160|Caenorhabditis elegans Hypothetical protein
R08B4.1b protein.
Length = 1160
Score = 30.3 bits (65), Expect = 1.9
Identities = 21/91 (23%), Positives = 26/91 (28%)
Frame = -2
Query: 860 GPGGXXXGAGXXXGGXRWGPXXRXXGXXXETXTXGTXXPGXXEGGGXPXRAXXSSXGEPS 681
G GG G+G GG G G G G GGG + G
Sbjct: 789 GGGGGNGGSGGGGGGGGGGSGGSGGGGSNSNSGGGGGNGGGGNGGGGNGNGGGAGDGNGG 848
Query: 680 XGGXXGRXLXXEGGQAR*GXVGSNXRAGSSS 588
G G G G+ AG+ +
Sbjct: 849 AGAGNGNGAGAGNGNGAGAGNGNGAGAGNGN 879
>U40797-6|AAB37547.1| 235|Caenorhabditis elegans Hypothetical
protein C28C12.4 protein.
Length = 235
Score = 29.9 bits (64), Expect = 2.5
Identities = 20/48 (41%), Positives = 20/48 (41%)
Frame = -2
Query: 866 RRGPGGXXXGAGXXXGGXRWGPXXRXXGXXXETXTXGTXXPGXXEGGG 723
RRGPGG G G GG R GP R G E G G G G
Sbjct: 162 RRGPGGRHGGPG-GPGGRRMGPGGR-GGDSREGPMMGGMGRGGFGGQG 207
>U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protein
43 protein.
Length = 303
Score = 29.1 bits (62), Expect = 4.4
Identities = 20/69 (28%), Positives = 23/69 (33%), Gaps = 1/69 (1%)
Frame = +1
Query: 556 RXGLPDRTGQXXEDPARSXDPTXPHLAXP-PSXXRXRPXXPPXXGSPXELXXALXGXPPP 732
R G P + G + P +PT P P P P P G P E G P
Sbjct: 123 RPGAPGQPGVPGKPPTAPCEPTTPPPCKPCPQGPPGPPGPPGAPGDPGE--AGTPGRPGT 180
Query: 733 SXXPGXXVP 759
PG P
Sbjct: 181 DATPGLPGP 189
>U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequence
x-hybridizingprotein 1 protein.
Length = 589
Score = 29.1 bits (62), Expect = 4.4
Identities = 34/128 (26%), Positives = 37/128 (28%), Gaps = 5/128 (3%)
Frame = +3
Query: 492 GPKGPTMXPLQXXPPCARWLYSAGAP*PDRPXGXRPRPXIXPYGPSSSLXXFXVEXSAXX 671
GP P+ P PP +GAP P G P P P S + S
Sbjct: 258 GPFNPSGAPPSGGPPGP--FDPSGAP----PSGGPPGPFDPSGAPPSGGPPGPFDPSGAQ 311
Query: 672 PPGRXL-PXRTXXCPXRXSTXFXXXXXXXPPGXG----FXXSPXXPXXGAPXXAPXXGAR 836
P G P P PP G F S P G P GA
Sbjct: 312 PSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAP 371
Query: 837 XXSXPPGP 860
PPGP
Sbjct: 372 PSGGPPGP 379
>AF039052-4|AAF98630.1| 981|Caenorhabditis elegans Proteasome
regulatory particle,non-atpase-like protein 1 protein.
Length = 981
Score = 29.1 bits (62), Expect = 4.4
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = +2
Query: 191 TTQGKPEELDQNGEEGIKINEKAGEYMRELLSEKIKLNNSKFPLSMKLIDQEVTKVQAS 367
TTQ P+E D+ + K+ EKA E+ E KL L +L + + T + S
Sbjct: 4 TTQQTPKEADKKKADDKKVPEKAEPKKEEMSEEDQKLEEDLNLLVQRLSEPDTTLYKPS 62
>AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical
protein R148.5b protein.
Length = 505
Score = 29.1 bits (62), Expect = 4.4
Identities = 14/37 (37%), Positives = 16/37 (43%)
Frame = +2
Query: 599 PPXHXTLRXLI*PXXLPGXDXGXXPPRXXAPPPNXPM 709
PP H R + P P G PPR PPP+ M
Sbjct: 307 PPPHFMGRGMPPPFMPPPPHFGMGPPRGFMPPPHPMM 343
>AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical
protein R148.5a protein.
Length = 528
Score = 29.1 bits (62), Expect = 4.4
Identities = 14/37 (37%), Positives = 16/37 (43%)
Frame = +2
Query: 599 PPXHXTLRXLI*PXXLPGXDXGXXPPRXXAPPPNXPM 709
PP H R + P P G PPR PPP+ M
Sbjct: 307 PPPHFMGRGMPPPFMPPPPHFGMGPPRGFMPPPHPMM 343
>AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen
protein.
Length = 303
Score = 29.1 bits (62), Expect = 4.4
Identities = 20/69 (28%), Positives = 23/69 (33%), Gaps = 1/69 (1%)
Frame = +1
Query: 556 RXGLPDRTGQXXEDPARSXDPTXPHLAXP-PSXXRXRPXXPPXXGSPXELXXALXGXPPP 732
R G P + G + P +PT P P P P P G P E G P
Sbjct: 123 RPGAPGQPGVPGKPPTAPCEPTTPPPCKPCPQGPPGPPGPPGAPGDPGE--AGTPGRPGT 180
Query: 733 SXXPGXXVP 759
PG P
Sbjct: 181 DATPGLPGP 189
>Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical
protein F23H12.4 protein.
Length = 301
Score = 28.7 bits (61), Expect = 5.8
Identities = 20/69 (28%), Positives = 22/69 (31%), Gaps = 1/69 (1%)
Frame = +1
Query: 556 RXGLPDRTGQXXEDPARSXDPTXPHLAXP-PSXXRXRPXXPPXXGSPXELXXALXGXPPP 732
R G P G + P +PT P P P P P G P E G P
Sbjct: 121 RPGAPGTPGTPGKPPVAPCEPTTPPPCKPCPQGPPGPPGPPGAPGDPGE--AGTPGRPGT 178
Query: 733 SXXPGXXVP 759
PG P
Sbjct: 179 DAAPGSPGP 187
>Z54238-1|CAA90992.2| 281|Caenorhabditis elegans Hypothetical
protein T28C6.1 protein.
Length = 281
Score = 28.7 bits (61), Expect = 5.8
Identities = 20/74 (27%), Positives = 23/74 (31%)
Frame = -2
Query: 884 GGXXXXRRGPGGXXXGAGXXXGGXRWGPXXRXXGXXXETXTXGTXXPGXXEGGGXPXRAX 705
GG + G GG G GG WG G G G +GGG +
Sbjct: 188 GGQGGNQGGGGGRGGNQGGEQGG--WGGQGGSQGGSQGGSQGGWGNQGGQQGGGRGGQQG 245
Query: 704 XSSXGEPSXGGXXG 663
G GG G
Sbjct: 246 PGGWGGGGRGGGWG 259
>V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-1 coding for a collagen.
).
Length = 296
Score = 28.7 bits (61), Expect = 5.8
Identities = 20/69 (28%), Positives = 22/69 (31%), Gaps = 1/69 (1%)
Frame = +1
Query: 556 RXGLPDRTGQXXEDPARSXDPTXPHLAXP-PSXXRXRPXXPPXXGSPXELXXALXGXPPP 732
R G P G + P +PT P P P P P G P E G P
Sbjct: 116 RPGAPGTPGTPGKPPVAPCEPTTPPPCKPCPQGPPGPPGPPGAPGDPGE--AGTPGRPGT 173
Query: 733 SXXPGXXVP 759
PG P
Sbjct: 174 DAAPGSPGP 182
Score = 28.7 bits (61), Expect = 5.8
Identities = 16/38 (42%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Frame = +3
Query: 756 PPGXGFXXSPXXPXX--GAPXXAPXXGARXXSXPPGPP 863
PPG P P GAP GA S PPGPP
Sbjct: 229 PPGAPGNDGPPGPPGPKGAPGPDGPPGADGQSGPPGPP 266
>J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 1 (col-1) gene, complete
cds. ).
Length = 296
Score = 28.7 bits (61), Expect = 5.8
Identities = 20/69 (28%), Positives = 22/69 (31%), Gaps = 1/69 (1%)
Frame = +1
Query: 556 RXGLPDRTGQXXEDPARSXDPTXPHLAXP-PSXXRXRPXXPPXXGSPXELXXALXGXPPP 732
R G P G + P +PT P P P P P G P E G P
Sbjct: 116 RPGAPGTPGTPGKPPVAPCEPTTPPPCKPCPQGPPGPPGPPGAPGDPGE--AGTPGRPGT 173
Query: 733 SXXPGXXVP 759
PG P
Sbjct: 174 DAAPGSPGP 182
Score = 28.7 bits (61), Expect = 5.8
Identities = 16/38 (42%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Frame = +3
Query: 756 PPGXGFXXSPXXPXX--GAPXXAPXXGARXXSXPPGPP 863
PPG P P GAP GA S PPGPP
Sbjct: 229 PPGAPGNDGPPGPPGPKGAPGPDGPPGADGQSGPPGPP 266
>Z81124-1|CAB03369.1| 312|Caenorhabditis elegans Hypothetical
protein T21B4.2 protein.
Length = 312
Score = 28.3 bits (60), Expect = 7.7
Identities = 16/36 (44%), Positives = 17/36 (47%)
Frame = +3
Query: 756 PPGXGFXXSPXXPXXGAPXXAPXXGARXXSXPPGPP 863
PPG +P P GAP P GA PPGPP
Sbjct: 182 PPG-----APGGP--GAPGNTPSGGAAGPPGPPGPP 210
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 28.3 bits (60), Expect = 7.7
Identities = 33/113 (29%), Positives = 33/113 (29%), Gaps = 5/113 (4%)
Frame = -2
Query: 854 GGXXXGAGXXXGGXRWGPXXRXXGXXXETXTXGTXXPGXXEGGG----XPXRAXXSSXGE 687
GG G G GG G G G G GGG P G
Sbjct: 157 GGGGGGCGGGGGGGCGGGSSGGGGYAVAPSGGGGCGGGGSSGGGGYAVAPSGGGGCGGGG 216
Query: 686 PSXGGXXGRXLXXEGGQAR*GXVGSNXRA-GSSSXWPVRSGSPXRVQPSCTGG 531
S GG GG A G GS A G SS SG S GG
Sbjct: 217 SSGGGGYASAPSGGGGYATSGGGGSGGYATGGSSGGGYSSGGSSGGGYSTGGG 269
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 28.3 bits (60), Expect = 7.7
Identities = 33/113 (29%), Positives = 33/113 (29%), Gaps = 5/113 (4%)
Frame = -2
Query: 854 GGXXXGAGXXXGGXRWGPXXRXXGXXXETXTXGTXXPGXXEGGG----XPXRAXXSSXGE 687
GG G G GG G G G G GGG P G
Sbjct: 157 GGGGGGCGGGGGGGCGGGSSGGGGYAVAPSGGGGCGGGGSSGGGGYAVAPSGGGGCGGGG 216
Query: 686 PSXGGXXGRXLXXEGGQAR*GXVGSNXRA-GSSSXWPVRSGSPXRVQPSCTGG 531
S GG GG A G GS A G SS SG S GG
Sbjct: 217 SSGGGGYASAPSGGGGYATSGGGGSGGYATGGSSGGGYSSGGSSGGGYSTGGG 269
>U42439-7|AAA83511.1| 304|Caenorhabditis elegans Collagen protein
110 protein.
Length = 304
Score = 28.3 bits (60), Expect = 7.7
Identities = 17/44 (38%), Positives = 17/44 (38%)
Frame = +1
Query: 562 GLPDRTGQXXEDPARSXDPTXPHLAXPPSXXRXRPXXPPXXGSP 693
G P R G E P DPT LA P P P GSP
Sbjct: 124 GAPGRPGNPGEPPRGPCDPT---LASPCDCPAGEPGEPGPRGSP 164
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,093,561
Number of Sequences: 27780
Number of extensions: 340237
Number of successful extensions: 1066
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 986
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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