Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_B13
(858 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0041 + 281427-281549,281671-281730,281822-281868,282013-28... 33 0.29
04_03_0665 - 18506221-18506271,18506331-18506401,18507097-185071... 31 0.89
11_04_0460 - 17955102-17955146,17955253-17955310,17955442-179555... 29 3.6
03_06_0034 + 31197846-31198417,31198562-31198987,31199074-311993... 29 4.7
06_03_1310 + 29238644-29240260 29 6.3
01_03_0217 + 13879259-13879270,13880322-13880683,13880771-13880855 29 6.3
12_02_1275 - 27482784-27483272 28 8.3
09_04_0361 - 16948740-16948860,16948951-16949018,16949424-169495... 28 8.3
06_03_0685 - 23499779-23500204 28 8.3
02_02_0279 - 8507603-8507620,8508040-8508060,8508613-8508835,850... 28 8.3
>05_01_0041 +
281427-281549,281671-281730,281822-281868,282013-282089,
285368-285440,286193-286281,286665-286711,286805-286885,
287011-287179,287381-287600,287679-287744,288194-288310,
288591-288628,288935-289032
Length = 434
Score = 33.1 bits (72), Expect = 0.29
Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Frame = -3
Query: 409 SPARHPSGRCRAVSRDIRTTTEARRPGTARNTRRPKPT-ELSACCRERSETPRHRNKPSR 233
SP RH R IR + + P R+ R P + + R RS PR R P R
Sbjct: 296 SPIRHGGTPSRRPGSPIRRRSPSPPPRRLRSPRHLSPRRDRGSPIRRRSPLPRRRLTPPR 355
Query: 232 PVWS 221
+WS
Sbjct: 356 RMWS 359
Score = 29.5 bits (63), Expect = 3.6
Identities = 24/72 (33%), Positives = 27/72 (37%), Gaps = 3/72 (4%)
Frame = -3
Query: 409 SPARHPSGRCRAVSRDIRTTTEAR-RPGTARNTRR--PKPTELSACCRERSETPRHRNKP 239
SP R P+ R S R R RP + RR P P R +P R P
Sbjct: 258 SPQRKPAPSPRRRSPPSRRVESPRCRPDSPPIRRRTAPSPIRHGGTPSRRPGSPIRRRSP 317
Query: 238 SRPVWSRRSPHH 203
S P RSP H
Sbjct: 318 SPPPRRLRSPRH 329
>04_03_0665 -
18506221-18506271,18506331-18506401,18507097-18507169,
18507476-18507805
Length = 174
Score = 31.5 bits (68), Expect = 0.89
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +3
Query: 198 WKWCGLRRDQTGREG 242
W WCGLRR + GR G
Sbjct: 65 WMWCGLRRSKAGRRG 79
>11_04_0460 -
17955102-17955146,17955253-17955310,17955442-17955593,
17955888-17955993,17956101-17956222,17956766-17956834,
17956969-17957214,17957331-17957373,17957449-17957520,
17957954-17958066,17958158-17958238,17958343-17958415,
17959413-17959519,17960410-17960514,17960684-17960974,
17961621-17961707,17961774-17961842,17961917-17961973,
17962057-17962155,17962223-17962312,17962395-17962511,
17964164-17964244,17964353-17964502,17964812-17964956,
17967359-17967510,17967647-17967784,17967838-17967914,
17968032-17968134
Length = 1015
Score = 29.5 bits (63), Expect = 3.6
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = +1
Query: 172 SSSISKYYNGNGVDSVETKQVEKVYSGDGASLSAPGSKRSALSASDAECFSLCLG 336
SSS S+Y N +G +T +++ SG +S S +S+ D E L LG
Sbjct: 781 SSSSSRYSNSSGTIFQKTSVQKRLSSGSSSSSKNKRSTAVVMSSPDCELDLLLLG 835
>03_06_0034 +
31197846-31198417,31198562-31198987,31199074-31199386,
31199510-31199560
Length = 453
Score = 29.1 bits (62), Expect = 4.7
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -2
Query: 293 AERLLPGALRDAPSPE*TFSTCLVSTESTPF 201
++RL+ ALR PSP F++ L +TPF
Sbjct: 39 SQRLVYAALRSLPSPRALFASLLSQLSATPF 69
>06_03_1310 + 29238644-29240260
Length = 538
Score = 28.7 bits (61), Expect = 6.3
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Frame = -3
Query: 409 SPARHPSGRCRAVSRDIRTTTEARRPGTARNTRRPKPTELSACCRERSETPRH----RNK 242
+PA+ P +C A + ++A+ T TRRP + RS P H R
Sbjct: 338 APAQRPPAQCAAAAAHPFDCSKAQCQATPPTTRRPGGR--TPLAPHRSPLPHHMPPRRTP 395
Query: 241 PSRPVWSRRSPHH 203
P+ P S +P H
Sbjct: 396 PTPPPPSSPTPSH 408
>01_03_0217 + 13879259-13879270,13880322-13880683,13880771-13880855
Length = 152
Score = 28.7 bits (61), Expect = 6.3
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -3
Query: 391 SGRCRAVSRDIRTTTEARRPGTARNTRRPKPTELSACCRER 269
SG + S+ IRT+ RP T + R PK +SA R +
Sbjct: 26 SGSIKRKSKKIRTSVTFHRPKTLKKARDPKYPRVSAPGRNK 66
>12_02_1275 - 27482784-27483272
Length = 162
Score = 28.3 bits (60), Expect = 8.3
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +3
Query: 195 QWKWCGLRRDQTGREG 242
+W W GLRR +TGR G
Sbjct: 144 RWVWRGLRRTKTGRRG 159
>09_04_0361 -
16948740-16948860,16948951-16949018,16949424-16949510,
16949626-16949694,16949786-16949854,16949944-16950765
Length = 411
Score = 28.3 bits (60), Expect = 8.3
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = -2
Query: 395 PLRAVQSREQGHQDHHRGPAPRHSEKHSASEADRAERL 282
P + S +GH +HHR + A E DR + L
Sbjct: 44 PFCMLTSSSRGHAEHHRNGGGGGEHRREAGEGDRPKAL 81
>06_03_0685 - 23499779-23500204
Length = 141
Score = 28.3 bits (60), Expect = 8.3
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +2
Query: 215 PSRPNRSRRFIPVTGRL*ALPAASAQLCRLRTPSVSRCAWAP 340
P R R RR+ P GR+ LP ++CR R P R P
Sbjct: 42 PPRGGRIRRWPPRRGRIRGLPPLGGRICR-RPPRGGRIHGLP 82
>02_02_0279 - 8507603-8507620,8508040-8508060,8508613-8508835,
8509204-8509553,8509631-8509729,8509811-8510105,
8510200-8510405,8510498-8510689,8510766-8511163,
8511258-8511444,8511473-8511528,8511800-8511872,
8512012-8512872,8514353-8514778
Length = 1134
Score = 28.3 bits (60), Expect = 8.3
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = -3
Query: 385 RCRAVSRDIRTTTEARRPGTARNTRRPKPTELSAC 281
R RA S+D R T + RP T R P P AC
Sbjct: 1024 RRRAPSQDWRYTPDVPRPRTRGRRRGPSPAIQKAC 1058
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,784,945
Number of Sequences: 37544
Number of extensions: 245585
Number of successful extensions: 1000
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 996
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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