Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_B13
         (858 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)               47   2e-05
SB_46036| Best HMM Match : PSRT (HMM E-Value=1)                        31   0.91 
SB_39786| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_23556| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.8  
SB_43189| Best HMM Match : PGAMP (HMM E-Value=2.1)                     29   4.8  
SB_2776| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   6.4  
SB_28630| Best HMM Match : DUF1665 (HMM E-Value=3.4)                   28   8.5  
SB_19124| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  
SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)                   28   8.5  

>SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 336

 Score = 47.2 bits (107), Expect = 2e-05
 Identities = 27/71 (38%), Positives = 32/71 (45%)
 Frame = -3

Query: 409 SPARHPSGRCRAVSRDIRTTTEARRPGTARNTRRPKPTELSACCRERSETPRHRNKPSRP 230
           SPA H   R R+ SR  R    +R P   R +R P P   S   R RS +PR R+  SR 
Sbjct: 215 SPAHHRRSRSRSRSRSPRRRRRSRSPRRRRRSRSPSPHHRSHRSRSRSRSPRRRHSRSRS 274

Query: 229 VWSRRSPHHFH 197
              RR     H
Sbjct: 275 PTHRRHRSRSH 285


>SB_46036| Best HMM Match : PSRT (HMM E-Value=1)
          Length = 878

 Score = 31.5 bits (68), Expect = 0.91
 Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = -3

Query: 394 PSGRCRAVSRDIRTTTEARRPGTARNTRRPKPTELSACCRERSETPRHRN-KPSR 233
           P GR ++ SR     T  R+  T+ N R P P   S   R  S +PR R+  PSR
Sbjct: 534 PVGRTKSPSRSY---TSPRQRRTSPNNRSPPPRRRSPSPRRPSPSPRRRSTSPSR 585


>SB_39786| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 294

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
 Frame = -3

Query: 370 SRDIRTTTEARRPGTARNTRRPKPTELSACCR----ERSETPRHRNKPSRPVWSRRSPHH 203
           +RD R T   R P  ++  R P+P++     R    +R   P  + +  RP   +R P H
Sbjct: 191 NRDTRDTINNRHPRPSQQQRHPRPSQQQRHPRPSQQQRYPRPSQQQRQPRPSQQQRYPRH 250


>SB_23556| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 671

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 15/59 (25%), Positives = 31/59 (52%)
 Frame = +1

Query: 172 SSSISKYYNGNGVDSVETKQVEKVYSGDGASLSAPGSKRSALSASDAECFSLCLGAGPL 348
           ++ +S+Y      ++++ + ++++Y  +      P S  +A   SD   FSLC+  GPL
Sbjct: 137 NTRLSEYLESRDCEAMDVR-LQRLYEHELVMYRLPESSATATPLSDLFDFSLCMCYGPL 194


>SB_43189| Best HMM Match : PGAMP (HMM E-Value=2.1)
          Length = 461

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 17/57 (29%), Positives = 22/57 (38%)
 Frame = -3

Query: 376 AVSRDIRTTTEARRPGTARNTRRPKPTELSACCRERSETPRHRNKPSRPVWSRRSPH 206
           A+   +  T    RP + R  R P     S     R +T      PSRP  + R PH
Sbjct: 4   ALHNTLTRTRVPSRPCSLRTVRHPHTGTKSTMAYARDDTLTRTRVPSRPSRTVRHPH 60


>SB_2776| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1792

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 398 APLRAVQSREQGHQDHHRGPAPRHSEKH 315
           AP++ +  R +G + HHR     HS+KH
Sbjct: 759 APMQHLGDRREGKRRHHRRHHHSHSQKH 786


>SB_28630| Best HMM Match : DUF1665 (HMM E-Value=3.4)
          Length = 428

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
 Frame = -2

Query: 410 QPRPAPL-RAVQSREQGHQDHHRGPAPRHSEKHSASEADRAER 285
           Q    PL R  +SR   H+DH     PR S  HS    D  ER
Sbjct: 197 QEERTPLKRRSRSRSLRHEDHDDA-TPRRSRSHSLRHEDEEER 238


>SB_19124| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 224

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = -3

Query: 370 SRDIRTTTEARRPGTARNTRRPKPTELSACCRERSETPRHRNKPSRPVWSRRSP 209
           +RD R T   R P  ++  R P+P++     ++R   P  + +  RP   +R P
Sbjct: 151 NRDTRDTINNRHPRPSQQQRYPRPSQ-----QQRYPRPSQQQRHPRPSQQQRHP 199


>SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)
          Length = 2049

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 14/51 (27%), Positives = 27/51 (52%)
 Frame = -3

Query: 409  SPARHPSGRCRAVSRDIRTTTEARRPGTARNTRRPKPTELSACCRERSETP 257
            +P    S RC+  ++ ++     ++PG+A    +PK  + S   R+RS +P
Sbjct: 1886 TPGFSQSRRCKTTAKALKKAKGKQKPGSATKKTKPK-QDSSKKKRKRSPSP 1935


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,329,880
Number of Sequences: 59808
Number of extensions: 268180
Number of successful extensions: 921
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2443309836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)