Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_B13
         (858 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g12450.1 68417.m01970 expressed protein                             32   0.42 
At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP1...    31   1.3  
At4g20690.1 68417.m03007 hypothetical protein                          28   6.9  

>At4g12450.1 68417.m01970 expressed protein
          Length = 277

 Score = 32.3 bits (70), Expect = 0.42
 Identities = 19/61 (31%), Positives = 28/61 (45%)
 Frame = -3

Query: 394 PSGRCRAVSRDIRTTTEARRPGTARNTRRPKPTELSACCRERSETPRHRNKPSRPVWSRR 215
           PS  CR   RD+  T    +PGT +   +P P+    C   R E   + + P+R   S R
Sbjct: 32  PSYSCRKNVRDVVNT----QPGTVKKNPKPDPSLRRLCSSRRPELDSNSHHPTRRSVSAR 87

Query: 214 S 212
           +
Sbjct: 88  A 88


>At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP19)
           non-consensus splice site at the intron:exon boundary
           (AT:exon)
          Length = 247

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = -2

Query: 428 PGXXXXQPRPAPLRAVQSREQGHQDHHRGPAP 333
           P      P PAP      R+  H+ HH  PAP
Sbjct: 159 PSPISLPPAPAPAPTKHKRKHKHKRHHHAPAP 190


>At4g20690.1 68417.m03007 hypothetical protein 
          Length = 138

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -3

Query: 406 PARHPSGRCRAVSRDIRTTTEARRPGTARNTRRPK 302
           PARH +     VSR + +++ AR    AR   RPK
Sbjct: 26  PARHLTRLKHLVSRSVSSSSSARPSQAARQLTRPK 60


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,971,583
Number of Sequences: 28952
Number of extensions: 174879
Number of successful extensions: 619
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1999652000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)