Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_FL5_B11
(851 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 28 1.5
SPCC61.02 |spt3||histone acetyltransferase complex subunit Spt3|... 27 2.6
SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces ... 27 2.6
SPAC30C2.06c |dml1||mitochondrial genome maintenance protein |Sc... 27 4.5
SPAC4F10.18 |||WD repeat protein, human NUP37 family|Schizosacch... 26 5.9
SPCC1672.12c |||DUF410 family protein|Schizosaccharomyces pombe|... 26 5.9
SPCC576.07 |ret3||coatomer zeta subunit |Schizosaccharomyces pom... 26 5.9
SPCC622.19 |jmj4|mug149|Jmj4 protein|Schizosaccharomyces pombe|c... 26 5.9
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces... 26 7.8
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 26 7.8
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 28.3 bits (60), Expect = 1.5
Identities = 20/63 (31%), Positives = 27/63 (42%)
Frame = +3
Query: 429 TPPPGTSLMVKILGSNSARQSITNTSRPPTTRWGTSSTTCSTGINPLCSGTERTKVSTKR 608
T PP TS V + ++ NTS P T+ +S+T T L + T T S
Sbjct: 1652 TSPPITSSTVVNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLN 1711
Query: 609 SGT 617
S T
Sbjct: 1712 SST 1714
>SPCC61.02 |spt3||histone acetyltransferase complex subunit
Spt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 307
Score = 27.5 bits (58), Expect = 2.6
Identities = 12/45 (26%), Positives = 19/45 (42%)
Frame = +1
Query: 202 NMWAQTWNNIESFTRPYPDKKEIDVTQAMRDQNYTPMKMFQMSDE 336
N A W FT P P+ +E + + Y + +M+DE
Sbjct: 119 NAVAMPWEVKNMFTEPVPETEEFEEDNDTMEMAYATRQRLKMADE 163
>SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 511
Score = 27.5 bits (58), Expect = 2.6
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +1
Query: 46 EVPDFEEQLAKLWEDVKPLYQQLHAYVRKRLRD 144
E+ F+ +L+ L++D+K + QLH Y + + D
Sbjct: 464 ELNSFQGELSSLFKDLKLVKSQLHDYPKPEVSD 496
>SPAC30C2.06c |dml1||mitochondrial genome maintenance protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 465
Score = 26.6 bits (56), Expect = 4.5
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Frame = +1
Query: 4 WGFDNVAEW--WQSEYEVPDFEEQLAKLWEDVKPLY 105
W D + E +SEYE+P + K W D L+
Sbjct: 114 WSRDEIHEGNAIESEYELPSIRPKSVKYWSDFNRLF 149
>SPAC4F10.18 |||WD repeat protein, human NUP37
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 391
Score = 26.2 bits (55), Expect = 5.9
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 8/40 (20%)
Frame = +3
Query: 507 RPPTTRWGTSSTTCS--------TGINPLCSGTERTKVST 602
RP TT W + S +CS TGI C+ E+T ST
Sbjct: 15 RPYTTTWCSQSPSCSNLLAIGHDTGITIYCASEEQTPGST 54
>SPCC1672.12c |||DUF410 family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 303
Score = 26.2 bits (55), Expect = 5.9
Identities = 12/45 (26%), Positives = 20/45 (44%)
Frame = +1
Query: 178 PIPAHLLGNMWAQTWNNIESFTRPYPDKKEIDVTQAMRDQNYTPM 312
P+ +LL WN++E+FT+ + DV D P+
Sbjct: 176 PVLNYLLAENLISAWNSLETFTKHFTKSNAPDVENMSFDGKDFPV 220
>SPCC576.07 |ret3||coatomer zeta subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 190
Score = 26.2 bits (55), Expect = 5.9
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Frame = -2
Query: 571 HNGLIPVLQVVLDVPHLVVGGL---EVFVIDC-RALFDPKIFTIKEVP 440
++G + V+ V+DV +VGG+ EV + +C R++ D K VP
Sbjct: 66 YDGKLVVMLTVMDVIFYIVGGMEENEVMLYECLRSIRDALELLFKYVP 113
>SPCC622.19 |jmj4|mug149|Jmj4 protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 473
Score = 26.2 bits (55), Expect = 5.9
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = +1
Query: 166 SARGPIPAHLLGNMWAQTWNNIESFTRPYPDK 261
++ G H+ N W +N+E F PY D+
Sbjct: 401 ASSGGSDVHIAFNYWFHPPDNLEDFDHPYLDR 432
>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 995
Score = 25.8 bits (54), Expect = 7.8
Identities = 9/35 (25%), Positives = 18/35 (51%)
Frame = +1
Query: 4 WGFDNVAEWWQSEYEVPDFEEQLAKLWEDVKPLYQ 108
WG+ NV + + + +FE + W D+ +Y+
Sbjct: 343 WGYKNVFDLVEVKENFKNFEIPVDTFWSDIDYMYE 377
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 25.8 bits (54), Expect = 7.8
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = +3
Query: 429 TPPPGTSLMVKILGSNSARQSITNTSRPPTTRWGTSSTTC--STGINPLCSGTERTKVST 602
T PP TS+ + + T T+ PPTT +++T +T +N T V+T
Sbjct: 83 TVPPTTSMNTTTTVPPTTSLNTTTTTAPPTTHVNSTTTVVPPTTHVNTTTVVPPTTHVNT 142
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,300,035
Number of Sequences: 5004
Number of extensions: 67783
Number of successful extensions: 210
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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