Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_B11
         (851 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0943 - 22778877-22780970,22781376-22781480,22781481-227820...    32   0.67 
01_01_0467 - 3446243-3446254,3446331-3446420,3446544-3446816,344...    29   6.2  

>07_03_0943 -
           22778877-22780970,22781376-22781480,22781481-22782059,
           22782149-22782187,22782340-22782372
          Length = 949

 Score = 31.9 bits (69), Expect = 0.67
 Identities = 19/82 (23%), Positives = 35/82 (42%)
 Frame = +3

Query: 441 GTSLMVKILGSNSARQSITNTSRPPTTRWGTSSTTCSTGINPLCSGTERTKVSTKRSGTR 620
           G  ++V+ +G    +  +T  +  P+   G S T     I   CS      +    +G  
Sbjct: 276 GARVLVEAVGIGKGKYDLTGFALDPSRNHGIS-TRAEIPIGKACSSLSSGDIIKFLTGDF 334

Query: 621 *LSRCRHRNICVGSVWPRAMPR 686
            LS+ +  ++   +VWPR + R
Sbjct: 335 RLSKAKSNDLFWEAVWPRLLAR 356


>01_01_0467 -
           3446243-3446254,3446331-3446420,3446544-3446816,
           3446898-3447066,3447579-3447646,3447890-3448074,
           3448683-3448806
          Length = 306

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = -2

Query: 526 HLVVGGLEVFVIDCRALFDPKIFTIKEVPGGGVTNDFSI 410
           HL+V    + V  C  LF+ K F  + V G GV N  SI
Sbjct: 49  HLLVTFCSLHVALCMKLFEHKPFDARTVMGFGVLNGISI 87


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,076,342
Number of Sequences: 37544
Number of extensions: 501001
Number of successful extensions: 1677
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1676
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)